Department of Biology

Research Output 1978 2019

2015
6 Citations (Scopus)

Agent-based mapping of credit risk for sustainable microfinance

Lee, J., Jusup, M., Podobnik, B. & Iwasa, Y., May 6 2015, In : PloS one. 10, 5, e0126447.

Research output: Contribution to journalArticle

credit
loans
Drawing (graphics)
Economics
social capital
21 Citations (Scopus)

A highly accurate inclusive cancer screening test using Caenorhabditis elegans scent detection

Hirotsu, T., Sonoda, H., Uozumi, T., Shinden, Y., Mimori, K., Maehara, Y., Ueda, N. & Hamakawa, M., Mar 11 2015, In : PloS one. 10, 3, e0118699.

Research output: Contribution to journalArticle

Caenorhabditis elegans
Odors
Early Detection of Cancer
Neurons
Screening
12 Citations (Scopus)

A mathematical model of phloem sucrose transport as a new tool for designing rice panicle structure for high grain yield

Seki, M., Feugier, F. G., Song, X. J., Ashikari, M., Nakamura, H., Ishiyama, K., Yamaya, T., Inari-Ikeda, M., Kitano, H. & Satake, A., Jan 1 2015, In : Plant and Cell Physiology. 56, 4, p. 605-619 15 p.

Research output: Contribution to journalArticle

Phloem
phloem
Sucrose
Theoretical Models
mathematical models
19 Citations (Scopus)

A method to determine the duration of the eclipse phase for in vitro infection with a highly pathogenic SHIV strain

Kakizoe, Y., Nakaoka, S., Beauchemin, C. A. A., Morita, S., Mori, H., Igarashi, T., Aihara, K., Miura, T. & Iwami, S., May 21 2015, In : Scientific reports. 5, 10371.

Research output: Contribution to journalArticle

Viruses
Infection
Theoretical Models
Virus Diseases
In Vitro Techniques
2 Citations (Scopus)
Vaccinia
Vaccinium
Cloning
Genetic Recombination
Organism Cloning
3 Citations (Scopus)

Analyses of random BAC clone sequences of Japanese cedar, Cryptomeria japonica

Tamura, M., Hisataka, Y., Moritsuka, E., Watanabe, A., Uchiyama, K., Futamura, N., Shinohara, K., Tsumura, Y. & Tachida, H., Jun 1 2015, In : Tree Genetics and Genomes. 11, 3

Research output: Contribution to journalArticle

Cryptomeria
Bacterial Artificial Chromosomes
bacterial artificial chromosomes
Cryptomeria japonica
Pinaceae
19 Citations (Scopus)

An Evolutionary Approach for Identifying Driver Mutations in Colorectal Cancer

Foo, J., Liu, L. L., Leder, K., Riester, M., Iwasa, Y., Lengauer, C. & Michor, F., Jan 1 2015, In : PLoS Computational Biology. 11, 9, e1004350.

Research output: Contribution to journalArticle

Colorectal Cancer
colorectal neoplasms
Driver
Colorectal Neoplasms
mutation
7 Citations (Scopus)

Angiogenesis in the developing spinal cord: Blood vessel exclusion from neural progenitor region is mediated by VEGF and its antagonists

Takahashi, T., Takase, Y., Yoshino, T., Saito, D., Tadokoro, R. & Takahashi, Y., Jan 14 2015, In : PloS one. 10, 1, e0116119.

Research output: Contribution to journalArticle

Blood vessels
angiogenesis
Fetal Blood
blood vessels
spinal cord
8 Citations (Scopus)

Ant-Attendance in Extrafloral Nectar-Bearing Plants Promotes Growth and Decreases the Expression of Traits Related to Direct Defenses

Yamawo, A., Tokuda, M., Katayama, N., Yahara, T. & Tagawa, J., Feb 15 2015, In : Evolutionary Biology. 42, 2, p. 191-198 8 p.

Research output: Contribution to journalArticle

nectar
ant
Formicidae
plant growth
Mallotus japonicus
3 Citations (Scopus)

Aporosa tetragona Tagane & V. S. Dang (Phyllanthaceae), a new species from Mt. Hon Ba, Vietnam

Tagane, S., Dang, V. S., Toyama, H., Naiki, A., Nagamasu, H., Yahara, T. & Tran, H., Jan 1 2015, In : PhytoKeys. 57, 1, p. 51-60 10 p.

Research output: Contribution to journalArticle

Phyllanthaceae
Tetragona
Vietnam
new species
flower
8 Citations (Scopus)

Application of DNA adductomics to soil bacterium Sphingobium sp. strain KK22

Kanaly, R. A., Micheletto, R., Matsuda, T., Utsuno, Y., Ozeki, Y. & Hamamura, N., Oct 2015, In : MicrobiologyOpen. 4, 5, p. 841-856 16 p.

Research output: Contribution to journalArticle

Soil
Acrolein
Bacteria
DNA
Ecotoxicology
1 Citation (Scopus)

A re-examination of the life and work of A.F.G. Kerr and of his colleagues and friends

THE THAI BIOGEOGRAPHY GROUP, Jan 1 2015, In : Thai Forest Bulletin (Botany). 43, p. 111-131 21 p.

Research output: Contribution to journalArticle

Thailand
social history
biogeography
photograph
GIS
6 Citations (Scopus)

A role for Ras in inhibiting circular foraging behavior as revealed by a new method for time and cell-specific RNAi

Hamakawa, M., Uozumi, T., Ueda, N., Iino, Y. & Hirotsu, T., Jan 1 2015, In : BMC Biology. 13, 1 p.

Research output: Contribution to journalArticle

foraging behavior
RNA Interference
RNA interference
RNA
foraging
3 Citations (Scopus)

Aversion for bitter taste reveals sexual differences in alimentation strategies in a praying mantis

Carle, T., Yamashita, T. & Yamawaki, Y., Aug 1 2015, In : Animal Behaviour. 106, p. 79-87 9 p.

Research output: Contribution to journalArticle

Mantis
sexual dimorphism
insect
feeding behavior
Tenodera aridifolia
10 Citations (Scopus)

CaMKII regulates the strength of the epithelial barrier

Shiomi, R., Shigetomi, K., Inai, T., Sakai, M. & Ikenouchi, J., Aug 18 2015, In : Scientific reports. 5, 13262.

Research output: Contribution to journalArticle

Calcium-Calmodulin-Dependent Protein Kinase Type 2
Tight Junctions
Epithelial Cells
Up-Regulation
Claudin-1
8 Citations (Scopus)

Cell - Cell signalling in sexual chemotaxis: A basis for gametic differentiation, mating types and sexes

Hadjivasiliou, Z., Iwasa, Y. & Pomiankowski, A., Aug 6 2015, In : Journal of the Royal Society Interface. 12, 109

Research output: Contribution to journalArticle

Cell signaling
Sex Differentiation
Chemotaxis
Detectors
Self Stimulation
42 Citations (Scopus)

Cell-to-cell infection by HIV contributes over half of virus infection

Iwami, S., Takeuchi, J. S., Nakaoka, S., Mammano, F., Clavel, F., Inaba, H., Kobayashi, T., Misawa, N., Aihara, K., Koyanagi, Y. & Sato, K., Oct 6 2015, In : eLife. 4, OCTOBER2015, e08150.

Research output: Contribution to journalArticle

Virus Diseases
Viruses
HIV Infections
Infection
HIV-1
2 Citations (Scopus)

Cellular response of sinorhizobium sp. Strain A2 during arsenite oxidation

Fukushima, K., Huang, H. & Hamamura, N., Dec 22 2015, In : Microbes and Environments. 30, 4, p. 330-334 5 p.

Research output: Contribution to journalArticle

Sinorhizobium
arsenites
arsenite
arsenic
oxidation

Construction of Nest Defensive Structure According to Offspring Value and Its Effect on Predator's Attack Decision in Paper Wasps

Furuichi, S. & Kasuya, E., Jun 1 2015, In : Ethology. 121, 6, p. 609-616 8 p.

Research output: Contribution to journalArticle

nest structure
Polistes
pupa
wasp
cocoon
8 Citations (Scopus)

Coupled social and ecological dynamics of herders in Mongolian rangelands

Lee, J. H., Kakinuma, K., Okuro, T. & Iwasa, Y., Jun 1 2015, In : Ecological Economics. 114, p. 208-217 10 p.

Research output: Contribution to journalArticle

rangeland
grass
animal
grazing pressure
biomass
14 Citations (Scopus)

Crosslinking of a Peritrophic Matrix Protein Protects Gut Epithelia from Bacterial Exotoxins

Shibata, T., Maki, K., Hadano, J., Fujikawa, T., Kitazaki, K., Koshiba, T. & Kawabata, S. I., Jan 1 2015, In : PLoS pathogens. 11, 10, e1005244.

Research output: Contribution to journalArticle

Exotoxins
Transglutaminases
Epithelium
Diptera
Proteins
1 Citation (Scopus)

Cultural evolution of hinoeuma superstition controlling human mate choice: The role of half-believer

Hara, M., Lee, J. & Iwasa, Y., Nov 21 2015, In : Journal of Theoretical Biology. 385, p. 40-49 10 p.

Research output: Contribution to journalArticle

Cultural Evolution
Superstitions
childbirth
mating behavior
Dynamic models
7 Citations (Scopus)

Determination of seed soundness in conifers cryptomeria japonica and chamaecyparis obtusa using narrow-multiband spectral imaging in the short-wavelength infrared range

Matsuda, O., Hara, M., Tobita, H., Yazaki, K., Nakagawa, T., Shimizu, K., Uemura, A. & Utsugi, H., Jun 17 2015, In : PloS one. 10, 6, e0128358.

Research output: Contribution to journalArticle

Chamaecyparis
Cryptomeria
Coniferophyta
Chamaecyparis obtusa
Cryptomeria japonica
5 Citations (Scopus)

Difference in flowering time can initiate speciation of nocturnally flowering species

Matsumoto, T., Yasumoto, A. A., Nitta, K., Hirota, S. K., Yahara, T. & Tachida, H., Apr 7 2015, In : Journal of Theoretical Biology. 370, p. 61-71 11 p.

Research output: Contribution to journalArticle

Speciation
Flowering
flowering
Magic
Internal-External Control
5 Citations (Scopus)

Dynamically rich, yet parameter-sparse models for spatial epidemiology: Comment on "Coupled disease-behavior dynamics on complex networks: A review" by Z. Wang et al.

Jusup, M., Iwami, S., Podobnik, B. & Stanley, H. E., Dec 1 2015, In : Physics of Life Reviews. 15, p. 43-46 4 p.

Research output: Contribution to journalComment/debate

epidemiology
Epidemiology
Nonlinear Dynamics
Complex networks
Theoretical Models
21 Citations (Scopus)

effects of logging and recruitment on community phylogenetic structure in 32 permanent forest plots of kampong thom, cambodia

Toyama, H., Kajisa, T., Tagane, S., Mase, K., Chhang, P., Samreth, V., Ma, V., Sokh, H., Ichihashi, R., Onoda, Y., Mizoue, N. & Yahara, T., Feb 19 2015, In : Philosophical Transactions of the Royal Society B: Biological Sciences. 370, 1662, p. 1-13 13 p., 20140008.

Research output: Contribution to journalArticle

Cambodia
Ecosystems
Agriculture
logging
Genes
1 Citation (Scopus)

Elaeagnus elongatus Tagane & V.S.Dang (Elaeagnaceae), a new species from Cambodia and Thailand

Tagane, S., Dang, V. S., Rueangruea, S., Suddee, S., Chhang, P., Toyama, H. & Yahara, T., Jan 1 2015, In : Thai Forest Bulletin (Botany). 43, p. 30-35 6 p.

Research output: Contribution to journalArticle

Elaeagnaceae
Elaeagnus
Cambodia
Thailand
new species
31 Citations (Scopus)

EPLIN is a crucial regulator for extrusion of RasV12- transformed cells

Ohoka, A., Kajita, M., Ikenouchi, J., Yako, Y., Kitamoto, S., Kon, S., Ikegawa, M., Shimada, T., Ishikawa, S. & Fujita, Y., Jan 1 2015, In : Journal of Cell Science. 128, 4, p. 781-789 9 p.

Research output: Contribution to journalArticle

Epithelium
Filamins
Myosin Type II
Myosin-Light-Chain Kinase
Cyclic AMP-Dependent Protein Kinases
1 Citation (Scopus)

Erratum: Quantifying the Antiviral Effect of IFN on HIV-1 Replication in Cell Culture (Scientific Reports (2015) 5 (11761) DOI:10.1038/srep11761)

Ikeda, H., Godinho-Santos, A., Rato, S., Vanwalscappel, B., Clavel, F., Aihara, K., Iwami, S. & Mammano, F., Oct 22 2015, In : Scientific reports. 5, 15679.

Research output: Contribution to journalComment/debate

Evolution of Stalk/Spore Ratio in a Social Amoeba: Cell-to-Cell Interaction via a Signaling Chemical Shaped by Cheating Risk

Iwasa, Y., 2015, Trends in Mathematics. Springer International Publishing, Vol. 4. p. 113-117 5 p. (Trends in Mathematics; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell
Interaction
Altruism
Population Growth
Differentiate

Exploring the conserved quantity of viral infection model with periodical cell removal

Kakizoe, Y. & Iwami, S., Nov 1 2015, In : Japan Journal of Industrial and Applied Mathematics. 32, 3, p. 749-757 9 p.

Research output: Contribution to journalArticle

Conserved Quantity
Infection
Cell Culture
Cell culture
Cell
3 Citations (Scopus)

Factor B is the second lipopolysaccharide-binding protease zymogen in the horseshoe crab coagulation cascade

Kobayashi, Y., Takahashi, T., Shibata, T., Ikeda, S., Koshiba, T., Mizumura, H., Oda, T. & Kawabata, S-I., Jul 31 2015, In : Journal of Biological Chemistry. 290, 31, p. 19379-19386 8 p.

Research output: Contribution to journalArticle

Horseshoe Crabs
Enzyme Precursors
Complement Factor B
Coagulation
Lipopolysaccharides
11 Citations (Scopus)

Female-specific specialization of a posterior end region of the midgut symbiotic organ in Plautia splendens and allied stinkbugs

Hayashi, T., Hosokawa, T., Meng, X. Y., Koga, R. & Fukatsu, T., Jan 1 2015, In : Applied and environmental microbiology. 81, 7, p. 2603-2611 9 p.

Research output: Contribution to journalArticle

Plautia
symbiont
midgut
symbionts
Pentatomidae

First Asian Invertebrate Immunity Symposium (Busan, Korea). Preface to the Special Issue

Lee, B. L. U., Kawabata, S-I., Wang, C. & Kim, Y., Jan 1 2015, In : Archives of insect biochemistry and physiology. 88, 1, p. 1-3 3 p.

Research output: Contribution to journalEditorial

Bacterial Physiological Phenomena
Symbiosis
autophagy
Autophagy
Invertebrates
4 Citations (Scopus)

Function of desiccate in gustatory sensilla of drosophila melanogaster

Kawano, T., Ryuda, M., Matsumoto, H., Ochiai, M., Oda, Y., Tanimura, T., Csikos, G., Moriya, M. & Hayakawa, Y., Nov 27 2015, In : Scientific reports. 5, 17195.

Research output: Contribution to journalArticle

sensilla
Drosophila melanogaster
desiccation (plant physiology)
ingestion
taste sensitivity
20 Citations (Scopus)

Games of corruption: How to suppress illegal logging

Lee, J. H., Sigmund, K., Dieckmann, U. & Iwasa, Y., Feb 1 2015, In : Journal of Theoretical Biology. 367, p. 1-13 13 p.

Research output: Contribution to journalArticle

Harvesters
harvesters
logging
Game
Biodiversity
13 Citations (Scopus)

Genetics of Circadian Rhythms

Andreani, T. S., Itoh, T. Q., Yildirim, E., Hwangbo, D-S. & Allada, R., Dec 2015, In : Sleep Medicine Clinics. 10, 4, p. 413-21 9 p.

Research output: Contribution to journalReview article

Circadian Rhythm
Gene Expression
Light
Food
Therapeutics

Glycosaminoglycans and glycosylphosphatidylinositol-anchor proteins in development of caenorhabditis elegans

Nomura, K., Akiyoshi, S., Matsuda, A. & Nomura, K. H., Jan 1 2015, Glycoscience: Biology and Medicine. Springer Japan, p. 817-824 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycosylphosphatidylinositols
Caenorhabditis elegans
Glycosaminoglycans
Genes
Morphogenesis
6 Citations (Scopus)

Goniothalamus flagellistylus Tagane & V. S. Dang (Annonaceae), a new species from Mt. Hon Ba, Vietnam

Tagane, S., Dang, V. S., Yahara, T., Toyama, H. & Tran, H., Jan 1 2015, In : PhytoKeys. 50, 1, p. 1-8 8 p.

Research output: Contribution to journalArticle

Goniothalamus
Annonaceae
nature reserve
Vietnam
flower
20 Citations (Scopus)

Identification of non-Ser/Thr-Pro consensus motifs for Cdk1 and their roles in mitotic regulation of C2H2 zinc finger proteins and Ect2

Suzuki, K., Sako, K., Akiyama, K., Isoda, M., Senoo, C., Nakajo, N. & Sagata, N., Jan 1 2015, In : Scientific reports. 5, 7929.

Research output: Contribution to journalArticle

Proteins
Mitosis
Cyclin B
Peptide Library
Nuclear Localization Signals
28 Citations (Scopus)

In silico simulation modeling reveals the importance of the casparian strip for efficient silicon uptake in rice roots

Sakurai, G., Satake, A., Yamaji, N., Mitani-Ueno, N., Yokozawa, M., Feugier, F. G. & Ma, J. F., Jan 1 2015, In : Plant and Cell Physiology. 56, 4, p. 631-639 9 p.

Research output: Contribution to journalArticle

Silicon
silicon
Computer Simulation
uptake mechanisms
rice

Interaction between an Influenza A viral protein PB1-F2 and mitochondria

Yoshizumi, T. & Koshiba, T., Feb 1 2015, In : Seikagaku. The Journal of Japanese Biochemical Society. 87, 1, p. 144-148 5 p.

Research output: Contribution to journalReview article

Mitochondria
Staphylococcal Protein A
Viral Proteins
Animals
4 Citations (Scopus)

Intramolecular binding of the Rad9 C terminus in the checkpoint clamp Rad9-Hus1-Rad1 is closely linked with its DNA binding

Takeishi, Y., Iwaya-Omi, R., Ohashi, E. & Tsurimoto, T., Aug 7 2015, In : Journal of Biological Chemistry. 290, 32, p. 19923-19932 10 p.

Research output: Contribution to journalArticle

Clamping devices
Tail
DNA
Amino Acids
DNA Damage
11 Citations (Scopus)

Introgressive hybridization in two indo-west pacific rhizophora mangrove species, R. mucronata and R. stylosa

Ng, W. L. & Szmidt, A., Jan 1 2015, In : Aquatic Botany. 120, PB, p. 222-228 7 p.

Research output: Contribution to journalArticle

Rhizophora
introgression
mangrove
Rhizophora apiculata
hybridization
21 Citations (Scopus)

Learning the specific quality of taste reinforcement in larval Drosophila

Schleyer, M., Miura, D., Tanimura, T. & Gerber, B., Jan 19 2015, In : eLife. 2015, 4

Research output: Contribution to journalArticle

Drosophila
Reinforcement
Learning
Insects
Data storage equipment
7 Citations (Scopus)

Learning the specific quality of taste reinforcement in larval Drosophila

Schleyer, M., Miura, D., Tanimura, T. & Gerber, B., 2015, In : eLife. 4

Research output: Contribution to journalArticle

Drosophila
Reinforcement
Learning
Insects
Data storage equipment
12 Citations (Scopus)

Metabotropic glutamate receptors: Modulators of context-dependent feeding behaviour in C. elegans

Dillon, J., Franks, C. J., Murray, C., Edwards, R. J., Calahorro, F., Ishihara, T., Katsura, I., Holden-Dye, L. & O'Connor, V., Jun 12 2015, In : Journal of Biological Chemistry. 290, 24, p. 15052-15065 14 p.

Research output: Contribution to journalArticle

Pharyngeal Muscles
Metabotropic Glutamate Receptors
Feeding Behavior
Modulators
Optogenetics
1 Citation (Scopus)
Akaike information criterion
ecology
7 Citations (Scopus)

Nardonella endosymbionts of Japanese pest and non-pest weevils (Coleoptera: Curculionidae)

Hosokawa, T., Koga, R., Tanaka, K., Moriyama, M., Anbutsu, H. & Fukatsu, T., May 1 2015, In : Applied Entomology and Zoology. 50, 2, p. 223-229 7 p.

Research output: Contribution to journalArticle

endosymbionts
Curculionidae
pests
Coleoptera
Rhynchophorus ferrugineus
16 Citations (Scopus)

Natural variation in stomatal responses to environmental changes among Arabidopsis thaliana ecotypes

Takahashi, S., Monda, K., Negi, J., Konishi, F., Ishikawa, S., Hashimoto-Sugimoto, M., Goto, N. & Iba, K., Feb 23 2015, In : PloS one. 10, 2, e0117449.

Research output: Contribution to journalArticle

Ecotype
ecotypes
Arabidopsis
Atmospheric humidity
Arabidopsis thaliana