Department of Biology

Research Output 1978 2019

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Review article
2019

Cell Adhesion Structures in Epithelial Cells Are Formed in Dynamic and Cooperative Ways

Shigetomi, K. & Ikenouchi, J., Jul 1 2019, In : BioEssays. 41, 7, 1800227.

Research output: Contribution to journalReview article

Adherens Junctions
Cell adhesion
Cell Adhesion
Tight Junctions
Epithelial Cells
2 Citations (Scopus)

Continuous dynamic adjustment of the plant circadian oscillator

Webb, A. A. R., Seki, M., Satake, A. & Caldana, C., Dec 1 2019, In : Nature communications. 10, 1, 550.

Research output: Contribution to journalReview article

Physiology
Clocks
adjusting
oscillators
Plastics

FLORA of NAM KADING NATIONAL PROTECTED AREA VI: DIDYMOCARPUS MIDDLETONII (GESNERIACEAE), A NEW SPECIES from LIMESTONE

Souvannakhoummane, K., Souladeth, P., Tagane, S., Yang, C. J. & Yahara, T., Mar 1 2019, In : Edinburgh Journal of Botany. 76, 1, p. 45-54 10 p.

Research output: Contribution to journalReview article

Didymocarpus
Gesneriaceae
protected area
conservation areas
new species
2018
6 Citations (Scopus)

Flora of nam kading national protected area II: 30 new records of angiosperms for Laos

Tagane, S., Souladeth, P., Rueangruea, S., Okabe, N., Zhang, M., Chayer, S., Yang, C. J. & Yahara, T., Mar 1 2018, In : Edinburgh Journal of Botany. 75, 1, p. 107-116 10 p.

Research output: Contribution to journalReview article

Laos
angiosperm
new record
protected area
Angiospermae
2 Citations (Scopus)

Pluripotency and a secretion mechanism of Drosophila transglutaminase

Shibata, T. & Kawabata, S-I., Mar 1 2018, In : Journal of biochemistry. 163, 3, p. 165-176 12 p.

Research output: Contribution to journalReview article

Transglutaminases
Drosophila
Glutamine
Exosomes
Acylation
10 Citations (Scopus)

Regulation of the epithelial barrier by post-translational modifications of tight junction membrane proteins

Shigetomi, K. & Ikenouchi, J., Apr 1 2018, In : Journal of biochemistry. 163, 4, p. 265-272 8 p.

Research output: Contribution to journalReview article

Tight Junction Proteins
Post Translational Protein Processing
MARVEL Domain Containing 2 Protein
Membrane Proteins
Tight Junctions
1 Citation (Scopus)

Roles of membrane lipids in the organization of epithelial cells: Old and new problems

Ikenouchi, J., Apr 3 2018, In : Tissue Barriers. 6, 2, p. 1-8 8 p.

Research output: Contribution to journalReview article

Membrane Lipids
Epithelial Cells
Membranes
Lipids
Membrane Proteins
2017
19 Citations (Scopus)

Monitoring biodiversity change through effective global coordination

Navarro, L. M., Fernández, N., Guerra, C., Guralnick, R., Kissling, W. D., Londoño, M. C., Muller-Karger, F., Turak, E., Balvanera, P., Costello, M. J., Delavaud, A., El Serafy, G. Y., Ferrier, S., Geijzendorffer, I., Geller, G. N., Jetz, W., Kim, E. S., Kim, H. J., Martin, C. S., McGeoch, M. A. & 13 others, Mwampamba, T. H., Nel, J. L., Nicholson, E., Pettorelli, N., Schaepman, M. E., Skidmore, A., Sousa Pinto, I., Vergara, S., Vihervaara, P., Xu, H., Yahara, T., Gill, M. & Pereira, H. M., Dec 1 2017, In : Current Opinion in Environmental Sustainability. 29, p. 158-169 12 p.

Research output: Contribution to journalReview article

biodiversity
monitoring
data acquisition
co-ordination
decision maker
29 Citations (Scopus)

Understanding and monitoring the consequences of human impacts on intraspecific variation

Mimura, M., Yahara, T., Faith, D. P., Vázquez-Domínguez, E., Colautti, R. I., Araki, H., Javadi, F., Núñez-Farfán, J., Mori, A. S., Zhou, S., Hollingsworth, P. M., Neaves, L. E., Fukano, Y., Smith, G. F., Sato, Y. I., Tachida, H. & Hendry, A. P., Feb 1 2017, In : Evolutionary Applications. 10, 2, p. 121-139 19 p.

Research output: Contribution to journalReview article

intraspecific variation
anthropogenic effect
anthropogenic activities
genetic variation
monitoring
2016
69 Citations (Scopus)

CO2 Sensing and CO2 Regulation of Stomatal Conductance: Advances and Open Questions

Engineer, C. B., Hashimoto-Sugimoto, M., Negi, J., Israelsson-Nordström, M., Azoulay-Shemer, T., Rappel, W. J., Iba, K. & Schroeder, J. I., Jan 1 2016, In : Trends in Plant Science. 21, 1, p. 16-30 15 p.

Research output: Contribution to journalReview article

stomatal conductance
carbon dioxide
guard cells
gas exchange
stomatal movement

Glycosmis suberosa (Rutaceae), a new species from Khao Luang National Park, Peninsular Thailand

Toyama, H., Rueangruea, S., Tagane, S., Naiki, A., Nagamasu, H., Suddee, S. & Yahara, T., Jan 1 2016, In : Thai Forest Bulletin (Botany). 44, 2, p. 116-121 6 p.

Research output: Contribution to journalReview article

Glycosmis
Rutaceae
Thailand
national parks
national park

Interaction between Viral Proteins and Mitochondria

Yoshizumi, T., Yasukawa, K. & Koshiba, T., Aug 1 2016, In : Fukuoka igaku zasshi = Hukuoka acta medica. 107, 8, p. 148-154 7 p.

Research output: Contribution to journalReview article

Viral Proteins
Mitochondria
Antiviral Agents
Signal Transduction
RNA Viruses
2015

Interaction between an Influenza A viral protein PB1-F2 and mitochondria

Yoshizumi, T. & Koshiba, T., Feb 1 2015, In : Seikagaku. The Journal of Japanese Biochemical Society. 87, 1, p. 144-148 5 p.

Research output: Contribution to journalReview article

Influenza A virus
Staphylococcal Protein A
Viral Proteins
Human Influenza
Amino Acid Sequence
535 Citations (Scopus)

The IPBES Conceptual Framework - connecting nature and people

Díaz, S., Demissew, S., Carabias, J., Joly, C., Lonsdale, M., Ash, N., Larigauderie, A., Adhikari, J. R., Arico, S., Báldi, A., Bartuska, A., Baste, I. A., Bilgin, A., Brondizio, E., Chan, K. M. A., Figueroa, V. E., Duraiappah, A., Fischer, M., Hill, R., Koetz, T. & 64 others, Leadley, P., Lyver, P., Mace, G. M., Martin-Lopez, B., Okumura, M., Pacheco, D., Pascual, U., Pérez, E. S., Reyers, B., Roth, E., Saito, O., Scholes, R. J., Sharma, N., Tallis, H., Thaman, R., Watson, R., Yahara, T., Hamid, Z. A., Akosim, C., Al-Hafedh, Y., Allahverdiyev, R., Amankwah, E., Asah, T. S., Asfaw, Z., Bartus, G., Brooks, A. L., Caillaux, J., Dalle, G., Darnaedi, D., Driver, A., Erpul, G., Escobar-Eyzaguirre, P., Failler, P., Fouda, A. M. M., Fu, B., Gundimeda, H., Hashimoto, S., Homer, F., Lavorel, S., Lichtenstein, G., Mala, W. A., Mandivenyi, W., Matczak, P., Mbizvo, C., Mehrdadi, M., Metzger, J. P., Mikissa, J. B., Moller, H., Mooney, H. A., Mumby, P., Nagendra, H., Nesshover, C., Oteng-Yeboah, A. A., Pataki, G., Roué, M., Rubis, J., Schultz, M., Smith, P., Sumaila, R., Takeuchi, K., Thomas, S., Verma, M., Yeo-Chang, Y. & Zlatanova, D., Jun 1 2015, In : Current Opinion in Environmental Sustainability. 14, p. 1-16 16 p.

Research output: Contribution to journalReview article

conceptual framework
ecosystem service
biodiversity
indigenous knowledge
scientific discipline
46 Citations (Scopus)

Towards a global terrestrial species monitoring program

Schmeller, D. S., Julliard, R., Bellingham, P. J., Böhm, M., Brummitt, N., Chiarucci, A., Couvet, D., Elmendorf, S., Forsyth, D. M., Moreno, J. G., Gregory, R. D., Magnusson, W. E., Martin, L. J., McGeoch, M. A., Mihoub, J. B., Pereira, H. M., Proença, V., van Swaay, C. A. M., Yahara, T. & Belnap, J., May 1 2015, In : Journal for Nature Conservation. 25, p. 51-57 7 p.

Research output: Contribution to journalReview article

biodiversity
monitoring
programme
capacity building
ecosystem service
2014
20 Citations (Scopus)
leaf development
chloroplasts
rice
temperature
nucleotides
7 Citations (Scopus)

Modeling socio-economic aspects of ecosystem management and biodiversity conservation

Lee, J. & Iwasa, Y., Jan 1 2014, In : Population Ecology. 56, 1, p. 27-40 14 p.

Research output: Contribution to journalReview article

ecosystem management
socioeconomics
tourists
fishery resources
biodiversity
32 Citations (Scopus)

New approaches to the biology of stomatal guard cells

Negi, J., Hashimoto-Sugimoto, M., Kusumi, K. & Iba, K., Feb 1 2014, In : Plant and Cell Physiology. 55, 2, p. 241-250 10 p.

Research output: Contribution to journalReview article

guard cells
Biological Sciences
mutants
Droughts
Hot Temperature
57 Citations (Scopus)

Peroxisome biogenesis in mammalian cells

Fujiki, Y., Okumoto, K., Mukai, S., Honsho, M. & Tamura, S., Jan 1 2014, In : Frontiers in Physiology. 5 AUG, Article 307.

Research output: Contribution to journalReview article

Peroxisomes
Cricetulus
Genes
Membranes
Ovary
2013

[Mitochondria and antiviral immunity].

Koshiba, T., Jan 1 2013, In : Seikagaku. The Journal of Japanese Biochemical Society. 85, 5, p. 336-344 9 p.

Research output: Contribution to journalReview article

Signal Transducing Adaptor Proteins
Virus Internalization
Signal transduction
Mitochondria
Protein Binding
28 Citations (Scopus)

Global legume diversity assessment: Concepts, key indicators, and strategies

Yahara, T., Javadi, F., Onoda, Y., de Queiroz, L. P., Faith, D. P., Prado, D. E., Akasaka, M., Kadoya, T., Ishihama, F., Davies, S., Slik, J. W. F., Yi, T., Ma, K., Bin, C., Darnaedi, D., Pennington, R. T., Tuda, M., Shimada, M., Ito, M., Egan, A. N. & 10 others, Buerki, S., Raes, N., Kajita, T., Vatanparast, M., Mimura, M., Tachida, H., Iwasa, Y., Smith, G. F., Victor, J. E. & Nkonki, T., Apr 20 2013, In : Taxon. 62, 2, p. 249-266 18 p.

Research output: Contribution to journalReview article

legumes
species diversity
extinction risk
functional diversity
indicator
56 Citations (Scopus)

Mitochondrial-mediated antiviral immunity

Koshiba, T., Jan 1 2013, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1833, 1, p. 225-232 8 p.

Research output: Contribution to journalReview article

Antiviral Agents
Immunity
Innate Immunity
Signal Transduction
Mitochondria
14 Citations (Scopus)

The acetyl-CoA transporter family SLC33

Hirabayashi, Y., Nomura, K. H. & Nomura, K., Apr 1 2013, In : Molecular Aspects of Medicine. 34, 2-3, p. 586-589 4 p.

Research output: Contribution to journalReview article

Acetyl Coenzyme A
Gangliosides
Endoplasmic Reticulum
Genes
Membranes
2012
50 Citations (Scopus)

Biodiversity and ecosystem services science for a sustainable planet: The DIVERSITAS vision for 2012-20

Larigauderie, A., Prieur-Richard, A. H., Mace, G. M., Lonsdale, M., Mooney, H. A., Brussaard, L., Cooper, D., Cramer, W., Daszak, P., Díaz, S., Duraiappah, A., Elmqvist, T., Faith, D. P., Jackson, L. E., Krug, C., Leadley, P. W., Le Prestre, P., Matsuda, H., Palmer, M., Perrings, C. & 7 others, Pulleman, M., Reyers, B., Rosa, E. A., Scholes, R. J., Spehn, E., Turner, B. L. & Yahara, T., Feb 1 2012, In : Current Opinion in Environmental Sustainability. 4, 1, p. 101-105 5 p.

Research output: Contribution to journalReview article

ecosystem service
biodiversity
planet
science
science policy
77 Citations (Scopus)

Building a global observing system for biodiversity

Scholes, R. J., Walters, M., Turak, E., Saarenmaa, H., Heip, C. H. R., Tuama, É. Ó., Faith, D. P., Mooney, H. A., Ferrier, S., Jongman, R. H. G., Harrison, I. J., Yahara, T., Pereira, H. M., Larigauderie, A. & Geller, G., Feb 1 2012, In : Current Opinion in Environmental Sustainability. 4, 1, p. 139-146 8 p.

Research output: Contribution to journalReview article

biodiversity
advocacy
Group
policy making
harmonization
28 Citations (Scopus)
Peroxisomes
Membranes
Adenosine Triphosphatases
peroxisome-targeting signal 1 receptor
Hydrolysis
2011
18 Citations (Scopus)

Mitochondria and antiviral innate immunity

Koshiba, T., Bashiruddin, N. & Kawabata, S-I., 2011, In : International Journal of Biochemistry and Molecular Biology. 2, 3, p. 257-262 6 p.

Research output: Contribution to journalReview article

Mitochondria
Innate Immunity
Antiviral Agents
Immunity
Signal transduction
2010
104 Citations (Scopus)

Evosystem services: An evolutionary perspective on the links between biodiversity and human well-being

Faith, D. P., Magallón, S., Hendry, A. P., Conti, E., Yahara, T. & Donoghue, M. J., May 1 2010, In : Current Opinion in Environmental Sustainability. 2, 1-2, p. 66-74 9 p.

Research output: Contribution to journalReview article

biodiversity
well-being
ecosystem service
trade-off
conservation planning
13 Citations (Scopus)

Genetic diversity assessments in the century of genome science

Yahara, T., Donoghue, M., Zardoya, R., Faith, D. P. & Cracraft, J., May 1 2010, In : Current Opinion in Environmental Sustainability. 2, 1-2, p. 43-49 7 p.

Research output: Contribution to journalReview article

genome
biodiversity
genomics
science
ecosystem structure
2 Citations (Scopus)

NBRP, national bioresource project of Japan and plant bioresource management

Kurata, N., Satoh, H., Kitano, H., Nagato, Y., Endo, T., Sato, K., Akashi, R., Ezura, H., Kusaba, M., Kobayashi, M., Nitasaka, E., Kasai, F., Yamazaki, Y. & Yoshimura, A., Dec 1 2010, In : Breeding Science. 60, 5, p. 461-468 8 p.

Research output: Contribution to journalReview article

Japan
genetic resources
Research
germplasm
cell lines
191 Citations (Scopus)

Proteolytic cascades and their involvement in invertebrate immunity

Cerenius, L., Kawabata, S-I., Lee, B. L., Nonaka, M. & Söderhäll, K., Oct 1 2010, In : Trends in Biochemical Sciences. 35, 10, p. 575-583 9 p.

Research output: Contribution to journalReview article

Invertebrates
Immunity
Complement Receptors
Immune system
Toll-Like Receptors
19 Citations (Scopus)
Hemocytes
Glucans
Hemolymph
Invertebrates
Coagulation
2009
Multiprotein Complexes
Replication Origin
Proliferating Cell Nuclear Antigen
DNA-Directed DNA Polymerase
DNA Replication

[Regulation of the replication fork activity by clamp and clamp loader complexes].

Tsurimoto, T., Mar 2009, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 54, 4 Suppl, p. 374-379 6 p.

Research output: Contribution to journalReview article

Replication Protein C
Genetic Epigenesis
Saccharomyces cerevisiae Proteins
Ubiquitination
Proliferating Cell Nuclear Antigen
172 Citations (Scopus)

Biodiversity, climate change, and ecosystem services

Mooney, H., Larigauderie, A., Cesario, M., Elmquist, T., Hoegh-Guldberg, O., Lavorel, S., Mace, G. M., Palmer, M., Scholes, R. & Yahara, T., Oct 1 2009, In : Current Opinion in Environmental Sustainability. 1, 1, p. 46-54 9 p.

Research output: Contribution to journalReview article

ecosystem service
biodiversity
climate change
ecosystem
scientific community

Function of multiple clamp and loader systems in eukaryotic chromosome replication

Shiomi, Y. & Tsurimoto, T., Sep 9 2009, In : Seikagaku. 81, 5, p. 386-389 4 p.

Research output: Contribution to journalReview article

Replication Protein C
Saccharomyces cerevisiae Proteins
Cell Cycle Proteins
Loaders
Clamping devices

Molecular mechanism of guard cell CO2 sensing

Negi, J., Hashimoto, M., Matsuda, O. & Iba, K., May 2009, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 54, 6, p. 707-715 9 p.

Research output: Contribution to journalReview article

Malates
Arabidopsis Proteins
Calcium Signaling
Arabidopsis
Carbon Dioxide
9 Citations (Scopus)

Neurophysiology of gustatory receptor neurones in Drosophila.

Tanimura, T., Hiroi, M., Inoshita, T. & Marion-Poll, F., Jan 1 2009, In : SEB experimental biology series. 63, p. 59-76 18 p.

Research output: Contribution to journalReview article

Chemoreceptor Cells
Sense Organs
Sensilla
Neurophysiology
Action Potentials
31 Citations (Scopus)

Separate roles of structured and unstructured regions of Y-family DNA polymerases.

Ohmori, H., Hanafusa, T., Ohashi, E. & Vaziri, C., Dec 1 2009, In : Advances in protein chemistry and structural biology. 78, p. 99-146 48 p.

Research output: Contribution to journalReview article

DNA-Directed DNA Polymerase
DNA
Catalytic Domain
Proteins
Ubiquitin
6 Citations (Scopus)

Sulfation and related genes in caenorhabditis elegans

Souhei, M., Katsufumi, D. & Nomura, K., May 1 2009, In : Trends in Glycoscience and Glycotechnology. 21, 119, p. 179-191 13 p.

Research output: Contribution to journalReview article

Caenorhabditis elegans
Genes
Gene Knockout Techniques
RNA Interference
Morphogenesis
2008

[Mechanisms of behavioral plasticity in C. elegans].

Ishihara, T., Mar 2008, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 53, 4 Suppl, p. 587-593 7 p.

Research output: Contribution to journalReview article

Nerve Tissue Proteins
Caenorhabditis elegans Proteins
Bardet-Biedl Syndrome
Butanones
Olfactory Pathways
2007

Metabolic engineering of trienoic fatty acids and stress tolerance in higher plants

Matsuda, O., Kai, H., Yara, A. & Iba, K., May 1 2007, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 52, 6 Suppl, p. 536-542 7 p.

Research output: Contribution to journalReview article

Fatty Acid Desaturases
Plant Physiological Phenomena
Metabolic Engineering
Plant Diseases
Acclimatization

Morning glory mutants induced by transposable elements in the Edo era

Nitasaka, E., Dec 2007, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 52, 15, p. 1959-1964 6 p.

Research output: Contribution to journalReview article

18th Century History
MADS Domain Proteins
19th Century History
Ipomoea nil
Botany
8 Citations (Scopus)

Spatial pattern analysis in forest dynamics: Deviation from power law and direction of regeneration waves

Schlicht, R. & Iwasa, Y., Mar 1 2007, In : Ecological Research. 22, 2, p. 197-203 7 p.

Research output: Contribution to journalReview article

forest dynamics
power law
regeneration
vegetation
methodology
2006
55 Citations (Scopus)

Evolution of resistance to cancer therapy

Michor, F., Nowak, M. A. & Iwasa, Y., Jan 1 2006, In : Current Pharmaceutical Design. 12, 3, p. 261-271 11 p.

Research output: Contribution to journalReview article

Neoplasms
Pharmaceutical Preparations
Therapeutics
Drug Resistance
Epigenomics
123 Citations (Scopus)

Guard cell ABA and CO2 signaling network updates and Ca2+ sensor priming hypothesis

Israelsson, M., Siegel, R. S., Young, J., Hashimoto, M., Iba, K. & Schroeder, J. I., Dec 1 2006, In : Current Opinion in Plant Biology. 9, 6, p. 654-663 10 p.

Research output: Contribution to journalReview article

guard cells
abscisic acid
calcium
epidermis (plant)
gas exchange
36 Citations (Scopus)

Lessons from peroxisome-deficient Chinese hamster ovary (CHO) cell mutants

Fujiki, Y., Okumoto, K., Kinoshita, N. & Ghaedi, K., Dec 1 2006, In : Biochimica et Biophysica Acta - Molecular Cell Research. 1763, 12, p. 1374-1381 8 p.

Research output: Contribution to journalReview article

Peroxisomes
Cricetulus
Ovary
Genes
Organism Cloning
80 Citations (Scopus)

Recognition of pathogens and activation of immune responses in Drosophila and horseshoe crab innate immunity

Kurata, S., Ariki, S. & Kawabata, S-I., Jun 2 2006, In : Immunobiology. 211, 4, p. 237-249 13 p.

Research output: Contribution to journalReview article

Horseshoe Crabs
Hemocytes
Innate Immunity
Drosophila
Lipopolysaccharides
1 Citation (Scopus)

Space and society: A preface to the special feature on "Theoretical Ecology"

Iwasa, Y., May 1 2006, In : Ecological Research. 21, 3, p. 325-327 3 p.

Research output: Contribution to journalReview article

space use
social behavior
theoretical study
ecology
society
2005
132 Citations (Scopus)

Can chromosomal instability initiate tumorigenesis?

Michor, F., Iwasa, Y., Vogelstein, B., Lengauer, C. & Nowak, M. A., Feb 1 2005, In : Seminars in Cancer Biology. 15, 1, p. 43-49 7 p.

Research output: Contribution to journalReview article

Chromosomal Instability
Tumor Suppressor Genes
Carcinogenesis
Chromosomes
Mutation