Department of Bioscience and Biotechnology

Research Output 1976 2019

2019
1 Citation (Scopus)

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

Matsunami, M., Suzuki, M., Haramoto, Y., Fukui, A., Inoue, T., Yamaguchi, K., Uchiyama, I., Mori, K., Tashiro, K., Ito, Y., Takeuchi, T., Suzuki, K. I. T., Agata, K., Shigenobu, S. & Hayashi, T., Jun 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 3, p. 217-229 13 p.

Research output: Contribution to journalArticle

Open Access
Pleurodeles
Salamandridae
Developmental Biology
Transcriptome
Regeneration

Alkali-soluble pectin suppresses IgE production in human myeloma cell line in vitro

Iwamoto, A., Inoue, Y., Tachibana, H. & Kawahara, H., Apr 15 2019, In : Cytotechnology. 71, 2, p. 573-581 9 p.

Research output: Contribution to journalArticle

Alkalies
Immunoglobulin E
Fragaria
Cells
Cell Line

Alleviation of metabolic syndrome with dietary egg white protein

Shirouchi, B. & Matsuoka, R., Jan 1 2019, In : Journal of oleo science. 68, 6, p. 517-524 8 p.

Research output: Contribution to journalReview article

Open Access
Egg Proteins
Proteins
Cholesterol
Fats
Oils and fats

Analysis of catecholamine and their metabolites in mice brain by liquid chromatography-mass spectrometry using sulfonated mixed-mode copolymer column

Chung, H., Tajiri, S., Hyoguchi, M., Koyanagi, R., Shimura, A., Takata, F., Dohgu, S. & Matsui, T., Jan 1 2019, In : analytical sciences. 35, 4, p. 433-439 7 p.

Research output: Contribution to journalArticle

Open Access
formic acid
Liquid chromatography
Metabolites
Catecholamines
Mass spectrometry
2 Citations (Scopus)

A new and sensitive method for quantitative determination of helium in human blood by gas chromatography–mass spectrometry using naturally existing neon-21 as internal standard

Tsujita, A., Okazaki, H., Nagasaka, A., Gohda, A., Matsumoto, M. & Matsui, T., Jan 22 2019, In : Forensic Toxicology. 37, 1, p. 75-81 7 p.

Research output: Contribution to journalArticle

Neon
Helium
Spectrometry
Spectrum Analysis
Blood
Open Access
glutathione dehydrogenase (ascorbate)
Nilaparvata lugens
Oxidative stress
Glutathione Reductase
Glutathione Transferase

Antimicrobial resistance profiles of Listeria monocytogenes isolated from chicken meat in Fukuoka, Japan

Maung, A. T., Mohammadi, T. N., Nakashima, S., Liu, P., Masuda, Y., Honjoh, K-I. & Miyamoto, T., Sep 2 2019, In : International Journal of Food Microbiology. 304, p. 49-57 9 p.

Research output: Contribution to journalArticle

chicken meat
Listeria monocytogenes
antibiotic resistance
Meat
Chickens

A preliminary metagenome analysis based on a combination of protein domains

Igarashi, Y., Mori, D., Mitsuyama, S., Yoshitake, K., Ono, H., Watanabe, T., Taniuchi, Y., Sakami, T., Kuwata, A., Kobayashi, T., Ishino, Y., Watabe, S., Gojobori, T. & Asakawa, S., Jun 1 2019, In : Proteomes. 7, 2, 19.

Research output: Contribution to journalArticle

Open Access
Metagenome
Metagenomics
Genes
Firearms
Chemical analysis

Author Correction: Diversity in gut bacterial community of school-age children in Asia (Scientific Reports, (2015), 5, 1, (8397), 10.1038/srep08397)

Nakayama, J., Watanabe, K., Jiang, J., Matsuda, K., Chao, S. H., Haryono, P., La-ongkham, O., Sarwoko, M. A., Sujaya, I. N., Zhao, L., Chen, K. T., Chen, Y. P., Chiu, H. H., Hidaka, T., Huang, N. X., Kiyohara, C., Kurakawa, T., Sakamoto, N., Sonomoto, K., Tashiro, K. & 9 others, Tsuji, H., Chen, M. J., Leelavatcharamas, V., Liao, C. C., Nitisinprasert, S., Rahayu, E. S., Ren, F. Z., Tsai, Y. C. & Lee, Y. K., Dec 1 2019, In : Scientific reports. 9, 1, 6530.

Research output: Contribution to journalComment/debate

Open Access

BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice

Ikeda, T., Tanaka, W., Toriba, T., Suzuki, C., Maeno, A., Tsuda, K., Shiroishi, T., Kurata, T., Sakamoto, T., Murai, M., Matsusaka, H., Kumamaru, T. & Hirano, H. Y., May 1 2019, In : Plant Journal. 98, 3, p. 465-478 14 p.

Research output: Contribution to journalArticle

Inflorescence
homeotic genes
Meristem
Homeobox Genes
meristems

Biofertilizer production for agronomic application and evaluation of its symbiotic effectiveness in soybeans

Htwe, A. Z., Moh, S. M., Moe, K. & Yamakawa, T., Mar 27 2019, In : Agronomy. 9, 4, 162.

Research output: Contribution to journalArticle

Open Access
biofertilizers
soybeans
nitrogen fixation
nodulation
seed yield

Brain-transportable dipeptides across the blood-brain barrier in mice

Tanaka, M., Dohgu, S., Komabayashi, G., Kiyohara, H., Takata, F., Kataoka, Y., Nirasawa, T., Maebuchi, M. & Matsui, T., Dec 1 2019, In : Scientific reports. 9, 1, 5769.

Research output: Contribution to journalArticle

Open Access
Dipeptides
Blood-Brain Barrier
tyrosyl-proline
Brain
Peptides

Carnosine induces intestinal cells to secrete exosomes that activate neuronal cells

Sugihara, Y., Onoue, S., Tashiro, K., Sato, M., Hasegawa, T. & Katakura, Y., May 1 2019, In : PloS one. 14, 5, e0217394.

Research output: Contribution to journalArticle

Open Access
exosomes
Carnosine
Exosomes
carnosine
neurons

Catechol O-methyltransferase homologs in Schizosaccharomyces pombe are response factors to alkaline and salt stress

Tominaga, A., Higuchi, Y., Mori, H., Akai, M., Suyama, A., Yamada, N. & Takegawa, K., Jun 18 2019, In : Applied Microbiology and Biotechnology. 103, 12, p. 4881-4887 7 p.

Research output: Contribution to journalArticle

Catechol O-Methyltransferase
Schizosaccharomyces
Salts
Microarray Analysis
Oligonucleotide Array Sequence Analysis

Cellulase productivity of Trichoderma reesei mutants developed in Japan varies with varying pH conditions

Hirasawa, H., Shioya, K., Mori, K., Tashiro, K., Aburatani, S., Shida, Y., Kuhara, S. & Ogasawara, W., Jan 1 2019, In : Journal of Bioscience and Bioengineering.

Research output: Contribution to journalArticle

Trichoderma
Cellulase
Japan
Productivity
Enzymes

Chemo-enzymatic synthesis of p-nitrophenyl β-D-galactofuranosyl disaccharides from Aspergillus sp. fungal-type galactomannan

Ota, R., Okamoto, Y., Vavricka, C. J., Oka, T., Matsunaga, E., Takegawa, K., Kiyota, H. & Izumi, M., Feb 1 2019, In : Carbohydrate Research. 473, p. 99-103 5 p.

Research output: Contribution to journalArticle

Disaccharides
Aspergillus
Polysaccharides
Glycoconjugates
Cell Wall

Complete genome sequence of enterococcus faecium qu50, a thermophilic lactic acid bacterium capable of metabolizing xylose

Abe, K., Kanesaki, Y., Abdel-Rahman, M. A., Watanabe, S., Zendo, T., Chibazakura, T., Shimizu-Kadota, M., Sonomoto, K. & Yoshikawa, H., May 23 2019, In : Microbiology Resource Announcements. 8, 21, e0041319.

Research output: Contribution to journalArticle

Open Access
Enterococcus faecium
Xylose
Lactic Acid
Genome
Bacteria
1 Citation (Scopus)

Comprehensive behavioral analysis and quantification of brain free amino acids of C57BL/6J congenic mice carrying the 1473G allele in tryptophan hydroxylase-2

Koshimizu, H., Hirata, N., Takao, K., Toyama, K., Ichinose, T., Furuya, S. & Miyakawa, T., Mar 1 2019, In : Neuropsychopharmacology Reports. 39, 1, p. 56-60 5 p.

Research output: Contribution to journalArticle

Congenic Mice
Tryptophan Hydroxylase
Serotonin
Alleles
Amino Acids

Comprehensive Prediction of Target RNA Editing Sites for PLS-Class PPR Proteins in Arabidopsis thaliana

Kobayashi, T., Yagi, Y. & Nakamura, T., Apr 1 2019, In : Plant and Cell Physiology. 60, 4, p. 862-874 13 p.

Research output: Contribution to journalArticle

RNA Editing
RNA editing
Arabidopsis
Arabidopsis thaliana
prediction

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., Mar 1 2019, In : Review of Scientific Instruments. 90, 3, 035106.

Research output: Contribution to journalArticle

Continuous cell culture
silicones
readers
Silicones
Cell culture

Contribution of root hair development to sulfate uptake in arabidopsis

Kimura, Y., Ushiwatari, T., Suyama, A., Tominaga-Wada, R., Wada, T. & Maruyama, A., Apr 1 2019, In : Plants. 8, 4, 106.

Research output: Contribution to journalArticle

Open Access
root hairs
hair
sulfates
Arabidopsis
sulfate

Correction to: Genetic diversity and genetic variation in morpho-physiological traits to improve heat tolerance in Spring barley (Molecular Biology Reports, (2018), 45, 6, (2441-2453), 10.1007/s11033-018-4410-6)

Sallam, A., Amro, A., Elakhdar, A., Dawood, M. F. A., Kumamaru, T. & Stephen Baenziger, P., Apr 1 2019, In : Molecular biology reports. 46, 2, 1 p.

Research output: Contribution to journalComment/debate

Hordeum
Molecular Biology
Japan
Research
Thermotolerance

Crystal Structures of Csm2 and Csm3 in the Type III-A CRISPR–Cas Effector Complex

Takeshita, D., Sato, M., Inanaga, H. & Numata, T., Feb 15 2019, In : Journal of Molecular Biology. 431, 4, p. 748-763 16 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR-Associated Proteins
RNA
Thermoplasma
Staphylococcus epidermidis

Current understanding of bioaccessibility and bioavailability of food-derived bioactive peptides

Mine, Y. & Matsui, T., Jul 1 2019, In : International Journal of Food Science and Technology. 54, 7, p. 2319-2320 2 p.

Research output: Contribution to journalEditorial

Peptides
Biological Availability
bioavailability
peptides
Food
Lactic acid
Triticum
Lactic Acid
Bacteria
Yeast

Diallyl disulfide potentiates anti-obesity effect of green tea in high-fat/high-sucrose diet-induced obesity

Bae, J., Kumazoe, M., Fujimura, Y. & Tachibana, H., Feb 1 2019, In : Journal of Nutritional Biochemistry. 64, p. 152-161 10 p.

Research output: Contribution to journalArticle

High Fat Diet
Tea
Nutrition
Sucrose
Obesity

Dietary D-allulose alters cholesterol metabolism in Golden Syrian hamsters partly by reducing serum PCSK9 levels

Kanasaki, A., Jiang, Z., Mizokami, T., Shirouchi, B., Iida, T., Nagata, Y. & Sato, M., Sep 1 2019, In : Journal of Functional Foods. 60, 103429.

Research output: Contribution to journalArticle

psicose
cholesterol metabolism
subtilisin
Mesocricetus
Cholesterol

Dynamics of microbial populations responsible for biodegradation during the full-scale treatment of palm oil mill effluent

Mohd-Nor, D., Ramli, N., Sharuddin, S. S., Hassan, M. A., Mustapha, N. A., Ariffin, H., Sakai, K., Tashiro, Y., Shirai, Y. & Maeda, T., Jan 1 2019, In : Microbes and Environments. 34, 2, p. 121-128 8 p.

Research output: Contribution to journalArticle

Open Access
oil mill effluents
biodegradation
acetic acid
mill
methanogens

Effect of high temperature on starch biosynthetic enzymes and starch structure in japonica rice cultivar ‘Akitakomachi’ (Oryza sativa L.) endosperm and palatability of cooked rice

Kato, K., Suzuki, Y., Hosaka, Y., Takahashi, R., Kodama, I., Sato, K., Kawamoto, T., Kumamaru, T. & Fujita, N., May 1 2019, In : Journal of Cereal Science. 87, p. 209-214 6 p.

Research output: Contribution to journalArticle

Endosperm
palatability
Starch
endosperm
Oryza sativa

Effect of nitrogen gas packaging on odor development in yellowtail Seriola quinqueradiata muscle during ice storage

Kitabayashi, K., Tanimoto, S., Kikutani, H., Ohkita, T., Mabuchi, R. & Shimoda, M., Jan 22 2019, In : Fisheries science. 85, 1, p. 247-257 11 p.

Research output: Contribution to journalArticle

Seriola quinqueradiata
odor
packaging
muscle
ice
Open Access
drought tolerance
proline
Oryza sativa
water stress
starch
1 Citation (Scopus)
Open Access
Streptomyces griseoflavus
Bradyrhizobium
biofertilizers
mung beans
nodulation

Effects of Epigallocatechin Gallate on Viability and Cellular Proteins of Staphylococcus aureus

Kitichalermkiat, A., Kurahachi, M., Nonaka, A., Nakayama, M., Shimatani, K., Shigemune, N., Tsugukuni, T., Hitomi, J., Sato, J., Sonoda, T., Masuda, Y., Honjoh, K-I. & Miyamoto, T., Jan 1 2019, In : Food Science and Technology Research. 25, 2, p. 277-285 9 p.

Research output: Contribution to journalArticle

epigallocatechin
Staphylococcus aureus
viability
Proteins
proteins

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat

Effects on NPK status, growth, dry matter and yield of rice (Oryza sativa) by organic fertilizers applied in field condition

Moe, K., Htwe, A. Z., Thu, T. T. P., Kajihara, Y. & Yamakawa, T., May 1 2019, In : Agriculture (Switzerland). 9, 5, 109.

Research output: Contribution to journalArticle

Open Access
Fertilizers
organic fertilizers
Oryza sativa
fertilizers
rice
3 Citations (Scopus)

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase

Takashima, N., Ishino, S., Oki, K., Takafuji, M., Yamagami, T., Matsuo, R., Mayanagi, K. & Ishino, Y., Jan 22 2019, In : Extremophiles. 23, 1, p. 161-172 12 p.

Research output: Contribution to journalArticle

Thermococcus
Transcription Factor DP1
Archaea
DNA-Directed DNA Polymerase
DNA

Eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm

Elakhdar, A., Ushijima, T., Fukuda, M., Yamashiro, N., Kawagoe, Y. & Kumamaru, T., Apr 1 2019, In : Plant Science. 281, p. 223-231 9 p.

Research output: Contribution to journalArticle

Phenylpropanolamine
Endosperm
prolamins
translation (genetics)
endosperm
1 Citation (Scopus)

Expression, purification, and characterization of highly active endo-α-N-acetylgalactosaminidases expressed by silkworm-baculovirus expression system

Morio, A., Xu, J., Masuda, A., Kinoshita, Y., Hino, M., Morokuma, D., Goda, H. M., Okino, N., Ito, M., Mon, H., Fujita, R., Kusakabe, T. & Lee, M., Jun 1 2019, In : Journal of Asia-Pacific Entomology. 22, 2, p. 404-408 5 p.

Research output: Contribution to journalArticle

glycosidases
Enterococcus faecalis
Baculoviridae
silkworms
glycoproteins

Galactofuranosidase from JHA 19 Streptomyces sp. subcloning and biochemical characterization

Seničar, M., Legentil, L., Ferrières, V., Eliseeva, S. V., Petoud, S., Takegawa, K., Lafite, P. & Daniellou, R., Jul 1 2019, In : Carbohydrate Research. 480, p. 35-41 7 p.

Research output: Contribution to journalArticle

Streptomyces
Hydrolases
Enzymes
Substrate Specificity
Metabolism

Generation of virus-specific CD8 + T cells by vaccination with inactivated virus in the intestine of ginbuna crucian carp

Tajimi, S., Kondo, M., Nakanishi, T., Nagasawa, T., Nakao, M. & Somamoto, T., Apr 1 2019, In : Developmental and Comparative Immunology. 93, p. 37-44 8 p.

Research output: Contribution to journalArticle

Carps
Intestines
Vaccination
Viruses
T-Lymphocytes

Glucosinolate distribution in the aerial parts of sel1-10, a disruption mutant of the sulfate transporter SULTR1;2, in mature arabidopsis thaliana plants

Morikawa-Ichinose, T., Kim, S. J., Allahham, A., Kawaguchi, R. & Maruyama, A., Apr 1 2019, In : Plants. 8, 4, 95.

Research output: Contribution to journalArticle

Open Access
glucosinolates
aerial parts
transporters
sulfates
Arabidopsis thaliana

Guard cell photosynthesis is crucial in abscisic acid-induced stomatal closure

Iwai, S., Ogata, S., Yamada, N., Onjo, M., Sonoike, K. & Shimazaki, K. I., May 1 2019, In : Plant Direct. 3, 5, e00137.

Research output: Contribution to journalArticle

Open Access
Abscisic Acid
abscisic acid
Photosynthesis
guard cells
reactive oxygen species
1 Citation (Scopus)

High correlation between octanol-air partition coefficient and aroma release rate from O/W emulsions under non-equilibrium

Tamaru, S., Ono, A., Igura, N. & Shimoda, M., Feb 1 2019, In : Food Research International. 116, p. 883-887 5 p.

Research output: Contribution to journalArticle

Octanols
octanol
partition coefficients
Emulsions
odor compounds

Identification and expression analysis of the replication factor C protein in the silkworm, Bombyx mori

Yamamoto, K., Haque, M. R. & Saruta, F., Jan 1 2019, In : Journal of Insect Biotechnology and Sericology. 88, 1, p. 17-20 4 p.

Research output: Contribution to journalArticle

Replication Protein C
Bombyx
DNA replication
Bombyx mori
silkworms
1 Citation (Scopus)
Enterobacter
Bombyx
Proteins
Genes
Plasmids
Morus
Bombyx
nitrogen metabolism
uric acid
silkworms

Identification of lactic acid bacteria and yeasts, and characterization of food components of sourdoughs used in Japanese bakeries

Fujimoto, A., Ito, K., Narushima, N. & Miyamoto, T., May 1 2019, In : Journal of Bioscience and Bioengineering. 127, 5, p. 575-581 7 p.

Research output: Contribution to journalArticle

Bakeries
Lactic acid
Yeast
Lactic Acid
Bacteria

Identification of polyphenols that repair the ultraviolet-B-induced DNA damage via SIRT1-dependent XPC/XPA activation

Chong, Z., Matsuo, H., Onoue, S., Yamamoto, H., Ito, H. & Katakura, Y., Mar 1 2019, In : Journal of Functional Foods. 54, p. 119-127 9 p.

Research output: Contribution to journalArticle

Polyphenols
DNA damage
DNA Damage
ultraviolet radiation
polyphenols

Inhibition of Niemann-Pick C1-Like 1 by Ezetimibe Reduces Dietary 5β,6β-Epoxycholesterol Absorption in Rats

Shirouchi, B., Furukawa, Y., Nakamura, Y., Kawauchi, A., Imaizumi, K., Oku, H. & Sato, M., Feb 15 2019, In : Cardiovascular Drugs and Therapy. 33, 1, p. 35-44 10 p.

Research output: Contribution to journalArticle

Cholesterol
Thoracic Duct
Intestinal Absorption
Intestinal Mucosa
5,6-epoxycholesterol

Intestinal absorption of small peptides: a review

Shen, W. & Matsui, T., Jun 1 2019, In : International Journal of Food Science and Technology. 54, 6, p. 1942-1948 7 p.

Research output: Contribution to journalReview article

tripeptides
intestinal absorption
Intestinal Absorption
Health
Insurance Benefits