Division for Experimental Natural Science

Research Output 1980 2020

2020

A full-stage parallel architecture of three-dimensional discontinuous deformation analysis using OpenMP

Peng, X., Chen, G., Yu, P., Zhang, Y., Zhang, H. & Guo, L., Feb 2020, In : Computers and Geotechnics. 118, 103346.

Research output: Contribution to journalArticle

Digital differential analyzers
Parallel architectures
masonry
sliding
engineering
3 Citations (Scopus)

CPU-accelerated explicit discontinuous deformation analysis and its application to landslide analysis

Peng, X., Yu, P., Chen, G., Xia, M. & Zhang, Y., Jan 2020, In : Applied Mathematical Modelling. 77, p. 216-234 19 p.

Research output: Contribution to journalArticle

Landslide
Landslides
Program processors
OpenMP
Computational efficiency

Detecting and Studying High-Energy Collider Neutrinos with FASER at the LHC

FASER Collaboration & Ariga, T., Jan 9 2020, (Accepted/In press) In : European Physical Journal C.

Research output: Contribution to journalArticle

DsTau: Study of tau neutrino production with 400 GeV protons from the CERN-SPS

DsTau Collaboration & Ariga, T., Jan 7 2020, In : Journal of High Energy Physics.

Research output: Contribution to journalArticle

Open Access

Early identification of promiscuous attributes of aldose reductase inhibitors using a DMSO-perturbation assay

Tomohara, K., Hasegawa, N., Adachi, I., Horino, Y. & Nose, T., Jan 15 2020, In : Bioorganic and Medicinal Chemistry Letters. 30, 2, 126815.

Research output: Contribution to journalArticle

Aldehyde Reductase
Dimethyl Sulfoxide
Assays
Detergents
Hydantoins

Laboratory-scale investigation of the 3-D geometry of landslide dams in a U-shaped valley

Wu, H., Nian, T. K., Chen, G. Q., Zhao, W. & Li, D. Y., Feb 2020, In : Engineering Geology. 265, 105428.

Research output: Contribution to journalArticle

Landslides
Dams
landslide
dam
valley
2019
4 Citations (Scopus)

A method for microscopic unsaturated soil-water interaction analysis based on DDA

Guo, L., Li, T., Chen, G., Yu, P., Peng, X. & Yang, D., Apr 1 2019, In : Computers and Geotechnics. 108, p. 143-151 9 p.

Research output: Contribution to journalArticle

soil water
Soils
Water
soil
mechanics

A Miocene impact ejecta layer in the pelagic Pacific Ocean

Nozaki, T., Ohta, J., Noguchi, T., Sato, H., Ishikawa, A., Takaya, Y., Kimura, J. I., Chang, Q., Shimada, K., Ishibashi, J. I., Yasukawa, K., Kimoto, K., Iijima, K. & Kato, Y., Dec 1 2019, In : Scientific reports. 9, 1, 16111.

Research output: Contribution to journalArticle

Open Access
Northwestern United States
Pacific Ocean
Isotopes
Meteoroids
Biological Extinction

An acute increase in water temperature can increase free amino acid concentrations in the blood, brain, liver, and muscle in goldfish (Carassius auratus)

Wang, Y., Han, G., Pham, C. V., Koyanagi, K., Song, Y., Sudo, R., Lauwereyns, J., Cockrem, J. F., Furuse, M. & Chowdhury, V. S., Aug 15 2019, In : Fish Physiology and Biochemistry. 45, 4, p. 1343-1354 12 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
Liver
free amino acids

A newly identified mutation in the PEX26 gene is associated with a milder form of Zellweger spectrum disorder

Tanaka, A. J., Okumoto, K., Tamura, S., Abe, Y., Hirsch, Y., Deng, L., Ekstein, J., Chung, W. K. & Fujiki, Y., Jan 1 2019, In : Cold Spring Harbor Molecular Case Studies. 5, 1, a003483.

Research output: Contribution to journalArticle

Zellweger Syndrome
Peroxisomes
Fibroblasts
Mutation
Genes

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Fizika Nizkikh Temperatur. 45, 4, p. 434-438 5 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Low Temperature Physics. 45, 4, p. 376-379 4 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography

Nishiyama, R., Ariga, A., Ariga, T., Lechmann, A., Mair, D., Pistillo, C., Scampoli, P., Valla, P. G., Vladymyrov, M., Ereditato, A. & Schlunegger, F., Dec 1 2019, In : Scientific reports. 9, 1, 6970.

Research output: Contribution to journalArticle

Open Access
Mesons
Ice Cover
Radiography
Ice
Switzerland

Boulder size and shape distributions on asteroid Ryugu

Michikami, T., Honda, C., Miyamoto, H., Hirabayashi, M., Hagermann, A., Irie, T., Nomura, K., Ernst, C. M., Kawamura, M., Sugimoto, K., Tatsumi, E., Morota, T., Hirata, N., Noguchi, T., Cho, Y., Kameda, S., Kouyama, T., Yokota, Y., Noguchi, R., Hayakawa, M. & 16 others, Hirata, N., Honda, R., Matsuoka, M., Sakatani, N., Suzuki, H., Yamada, M., Yoshioka, K., Sawada, H., Hemmi, R., Kikuchi, H., Ogawa, K., Watanabe, S. I., Tanaka, S., Yoshikawa, M., Tsuda, Y. & Sugita, S., Oct 2019, In : Icarus. 331, p. 179-191 13 p.

Research output: Contribution to journalArticle

Open Access
boulder
asteroids
asteroid
navigation
Japanese spacecraft

Central regulation of feeding behavior through neuropeptides and amino acids in neonatal chicks

Tran, P. V., Chowdhury, V. S. & Furuse, M., Aug 1 2019, In : Amino Acids. 51, 8, p. 1129-1152 24 p.

Research output: Contribution to journalReview article

Feeding Behavior
Neuropeptides
Amino Acids
Chickens
Eating
1 Citation (Scopus)
plasma turbulence
method of moments
cylindrical plasmas
tomography
moments

Comprehensive analysis of landslide stability and related countermeasures: a case study of the Lanmuxi landslide in China

Han, Z., Su, B., Li, Y., Ma, Y., Wang, W. & Chen, G., Dec 1 2019, In : Scientific reports. 9, 1, 12407.

Research output: Contribution to journalArticle

Open Access
Landslides
China
Toes
Crowns
Reproducibility of Results
3 Citations (Scopus)

Cortisol responses of goldfish (Carassius auratus) to air exposure, chasing, and increased water temperature

Cockrem, J. F., Bahry, M. A. & Surchowdhury, V., Jan 1 2019, In : General and Comparative Endocrinology. 270, p. 18-25 8 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
cortisol
Hydrocortisone
6 Citations (Scopus)
Landslides
landslide
Computer simulation
submarine landslide
simulation
5 Citations (Scopus)

Distributed-Spring Edge-to-Edge Contact Model for Two-Dimensional Discontinuous Deformation Analysis

Yu, P., Zhang, Y., Peng, X., Chen, G. & Zhao, J. X., Jan 1 2019, In : Rock Mechanics and Rock Engineering.

Research output: Contribution to journalArticle

Digital differential analyzers
matrix
potential energy
stiffness
analysis
1 Citation (Scopus)

DMSO-Perturbing Assay for Identifying Promiscuous Enzyme Inhibitors

Tomohara, K., Adachi, I., Horino, Y., Kesamaru, H., Abe, H., Suyama, K. & Nose, T., Jan 1 2019, In : ACS Medicinal Chemistry Letters. 10, 6, p. 923-928 6 p.

Research output: Contribution to journalArticle

Enzyme Inhibitors
Dimethyl Sulfoxide
Assays
Enzymes
Conformations

Dried watermelon rind mash diet increases plasma l -citrulline level in chicks

Nguyen, L. T. N., Han, G., Yang, H., Ikeda, H., Eltahan, H. M., Chowdhury, V. S. & Furuse, M., Jan 1 2019, In : Journal of Poultry Science. 56, 1, p. 65-70 6 p.

Research output: Contribution to journalComment/debate

Open Access
citrulline
mash
watermelons
powders
chicks
1 Citation (Scopus)

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat

Estimation of particle flux driven by coherent mode using of statistical conditional averaging

Kawachi, Y., Inagaki, S., Hasamada, K., Yamasaki, K., Kin, F., Kosuga, Y., Sasaki, M., Nagashima, Y., Kasuya, N., Yamada, T., Zhang, B. & Fujisawa, A., Jan 1 2019, In : Plasma and Fusion Research. 14, 1402090.

Research output: Contribution to journalArticle

Open Access
flux (rate)
time lag
templates
9 Citations (Scopus)

Evaluation of impact force of rock landslides acting on structures using discontinuous deformation analysis

Yu, P., Zhang, Y., Peng, X., Wang, J., Chen, G. & Zhao, J. X., Oct 1 2019, In : Computers and Geotechnics. 114, 103137.

Research output: Contribution to journalArticle

Landslides
numerical method
sliding
landslide
Numerical methods

Evaluative processing of food images: Longer viewing for indecisive preference formation

Wolf, A., Ounjai, K., Takahashi, M., Kobayashi, S., Matsuda, T. & Lauwereyns, J., Jan 1 2019, In : Frontiers in Psychology. 10, MAR, 608.

Research output: Contribution to journalArticle

Open Access
Food Handling
Food
Personal Autonomy
Uncertainty
2 Citations (Scopus)

Extension and application of Discontinuous Deformation Analysis with a damped contact spring model

Yu, P., Chen, G., Peng, X., Guo, L. & Zhang, Y., Nov 2019, In : International Journal of Rock Mechanics and Mining Sciences. 123, 104123.

Research output: Contribution to journalArticle

damping
Damping
Geotechnical engineering
analysis
Landslides
11 Citations (Scopus)

FASER's Physics Reach for Long-Lived Particles

FASER Collaboration & Ariga, T., May 2019, In : Physical Review D. 99, 095011

Research output: Contribution to journalArticle

Open Access

Final results on neutrino oscillation parameters from the OPERA experiment in the CNGS beam

Agafonova, N., Alexandrov, A., Anokhina, A., Aoki, S., Ariga, A., Ariga, T., Bertolin, A., Bozza, C., Brugnera, R., Buontempo, S., Chernyavskiy, M., Chukanov, A., Consiglio, L., D'Ambrosio, N., De Lellis, G., De Serio, M., Del Amo Sanchez, P., Di Crescenzo, A., Di Ferdinando, D., Di Marco, N. & 106 others, Dmitrievsky, S., Dracos, M., Duchesneau, D., Dusini, S., Dzhatdoev, T., Ebert, J., Ereditato, A., Fini, R. A., Fukuda, T., Galati, G., Garfagnini, A., Gentile, V., Goldberg, J., Gorbunov, S., Gornushkin, Y., Grella, G., Guler, A. M., Gustavino, C., Hagner, C., Hara, T., Hayakawa, T., Hollnagel, A., Ishiguro, K., Iuliano, A., Jakovčić, K., Jollet, C., Kamiscioglu, C., Kamiscioglu, M., Kim, S. H., Kitagawa, N., Kliček, B., Kodama, K., Komatsu, M., Kose, U., Kreslo, I., Laudisio, F., Lauria, A., Longhin, A., Loverre, P., Malgin, A., Mandrioli, G., Matsuo, T., Matveev, V., Mauri, N., Medinaceli, E., Meregaglia, A., Mikado, S., Miyanishi, M., Mizutani, F., Monacelli, P., Montesi, M. C., Morishima, K., Muciaccia, M. T., Naganawa, N., Naka, T., Nakamura, M., Nakano, T., Niwa, K., Ogawa, S., Okateva, N., Ozaki, K., Paoloni, A., Paparella, L., Park, B. D., Pasqualini, L., Pastore, A., Patrizii, L., Pessard, H., Podgrudkov, D., Polukhina, N., Pozzato, M., Pupilli, F., Roda, M., Roganova, T., Rokujo, H., Rosa, G., Ryazhskaya, O., Sato, O., Schembri, A., Shakiryanova, I., Shchedrina, T., Shibayama, E., Shibuya, H., Shiraishi, T., Simone, S., Sirignano, C., Sirri, G., Sotnikov, A., Spinetti, M., Stanco, L., Starkov, N., Stellacci, S. M., Stipčević, M., Strolin, P., Takahashi, S., Tenti, M., Terranova, F., Tioukov, V., Tufanli, S., Vasina, S., Vilain, P., Voevodina, E., Votano, L., Vuilleumier, J. L., Wilquet, G. & Yoon, C. S., Sep 6 2019, In : Physical Review D. 100, 5, 051301.

Research output: Contribution to journalArticle

Open Access
neutrinos
oscillations
neutrino beams
antineutrinos
neutral currents
Heat-Shock Proteins
heat shock proteins
Gene expression
Brain
chicks
cylindrical plasmas
Fourier series
tomography
cameras
profiles
3 Citations (Scopus)

Heat stress biomarker amino acids and neuropeptide afford thermotolerance in chicks

Chowdhury, V. S., Jan 1 2019, In : Journal of Poultry Science. 56, 1, p. 1-11 11 p.

Research output: Contribution to journalReview article

Open Access
neuropeptides
heat tolerance
heat stress
biomarkers
neuropeptide Y
1 Citation (Scopus)

Hydra vulgaris exhibits day-night variation in behavior and gene expression levels

Kanaya, H. J., Kobayakawa, Y. & Itoh, T. Q., Mar 8 2019, In : Zoological Letters. 5, 1, 10.

Research output: Contribution to journalArticle

Open Access
Hydra
gene expression
genes
Cnidaria
photoperiod

Importance of Receptor Conformations in Docking Calculation-Based Risk Assessment for Endocrine Disruptors against Estrogen Receptor α

Kesamaru, H., Suyama, K. & Nose, T., Apr 10 2019, In : ACS Omega. 4, 4, p. 6620-6629 10 p.

Research output: Contribution to journalArticle

Open Access
Endocrine Disruptors
Estrogen Receptors
Risk assessment
Conformations
Ligands
12 Citations (Scopus)

Improvement of joint definition and determination in three-dimensional discontinuous deformation analysis

Peng, X., Chen, G., Yu, P., Zhang, Y. & Wang, J., Jun 1 2019, In : Computers and Geotechnics. 110, p. 148-160 13 p.

Research output: Contribution to journalArticle

Digital differential analyzers
simulation
mitigation
engineering
Disaster prevention
1 Citation (Scopus)

Improvement of Sensitivity and Reproducibility for Imaging of Endogenous Metabolites by Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry

Morikawa-Ichinose, T., Fujimura, Y., Murayama, F., Yamazaki, Y., Yamamoto, T., Wariishi, H. & Miura, D., Aug 15 2019, In : Journal of the American Society for Mass Spectrometry. 30, 8, p. 1512-1520 9 p.

Research output: Contribution to journalArticle

Sublimation
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Metabolites
Ionization
Mass spectrometry

Ion temperature measurement by laser-induced fluorescence spectroscopy in panta

Arakawa, H., Shigeru, I., Kosuga, Y., Sasaki, M., Kin, F., Hasamada, K., Yamasaki, K., Kobayashi, T., Yamada, T., Nagashima, Y., fujisawa, A., Kasuya, N., Itoh, K. & Itoh, S. I., Oct 1 2019, In : IEEJ Transactions on Electrical and Electronic Engineering. 14, 10, p. 1450-1454 5 p.

Research output: Contribution to journalArticle

Fluorescence spectroscopy
Temperature measurement
Plasma turbulence
Helicons
Lasers

Iron-Catalyzed Asymmetric Inter- and Intramolecular Aerobic Oxidative Dearomatizing Spirocyclization of 2-Naphthols

Oguma, T., Doiuchi, D., Fujitomo, C., Kim, C., Hayashi, H., Uchida, T. & Katsuki, T., Jan 1 2019, (Accepted/In press) In : Asian Journal of Organic Chemistry.

Research output: Contribution to journalArticle

Enantioselectivity
Iron
Nucleophiles
Phenol
Ketones

Light-at-night exposure affects brain development through pineal allopregnanolone-dependent mechanisms

Haraguchi, S., Kamata, M., Tokita, T., Tashiro, K. I., Sato, M., Nozaki, M., Okamoto-Katsuyama, M., Shimizu, I., Han, G., Chowdhury, V. S., Lei, X. F., Miyazaki, T., Kim-Kaneyama, J. R., Nakamachi, T., Matsuda, K., Ohtaki, H., Tokumoto, T., Tachibana, T., Miyazaki, A. & Tsutsui, K., Sep 2019, In : eLife. 8

Research output: Contribution to journalArticle

Pregnanolone
Brain
Purkinje Cells
Light
Cell death

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Chowdhury, V. S., Jun 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
Body Temperature
heat tolerance
Leucine
body temperature
leucine

Mean diffusivity associated with trait emotional intelligence

Takeuchi, H., Taki, Y., Nouchi, R., Yokoyama, R., Kotozaki, Y., Nakagawa, S., Sekiguchi, A., Iizuka, K., Yamamoto, Y., Hanawa, S., Araki, T., Miyauchi, C. M., Sakaki, K., Sassa, Y., Nozawa, T., Ikeda, S., Yokota, S., Daniele, M. & Kawashima, R., Sep 11 2019, In : Social cognitive and affective neuroscience. 14, 8, p. 871-883 13 p.

Research output: Contribution to journalArticle

Open Access
Emotional Intelligence
Social Support
Cognition
Prefrontal Cortex
Globus Pallidus

Melatonin is a potential drug for the prevention of bone loss during space flight

Ikegame, M., Hattori, A., Tabata, M. J., Kitamura, K. I., Tabuchi, Y., Furusawa, Y., Maruyama, Y., Yamamoto, T., Sekiguchi, T., Matsuoka, R., Hanmoto, T., Ikari, T., Endo, M., Omori, K., Nakano, M., Yashima, S., Ejiri, S., Taya, T., Nakashima, H., Shimizu, N. & 33 others, Nakamura, M., Kondo, T., Hayakawa, K., Takasaki, I., Kaminishi, A., Akatsuka, R., Sasayama, Y., Nishiuchi, T., Nara, M., Iseki, H., Chowdhury, V. S., Wada, S., Ijiri, K., Takeuchi, T., Suzuki, T., Ando, H., Matsuda, K., Somei, M., Mishima, H., Mikuni-Takagaki, Y., Funahashi, H., Takahashi, A., Watanabe, Y., Maeda, M., Uchida, H., Hayashi, A., Kambegawa, A., Seki, A., Yano, S., Shimazu, T., Suzuki, H., Hirayama, J. & Suzuki, N., Oct 1 2019, In : Journal of Pineal Research. 67, 3, e12594.

Research output: Contribution to journalArticle

Open Access
Weightlessness
Space Flight
Calcitonin
Osteoclasts
Melatonin

Modelling the flexural buckling failure of stratified rock slopes based on the multilayer beam model

Zhang, Y. J., Nian, T. K., Guo, X. S., Chen, G. & Zheng, L., May 1 2019, In : Journal of Mountain Science. 16, 5, p. 1170-1183 14 p.

Research output: Contribution to journalArticle

buckling
rock
modeling
German Federal Railways
energy
2 Citations (Scopus)

Multi-spring Edge-to-Edge Contact Model for Discontinuous Deformation Analysis and Its Application to the Tensile Failure Behavior of Rock Joints

Zhang, Y., Wang, J., Zhao, J. X., Chen, G., Yu, P. & Yang, T., Jan 1 2019, (Accepted/In press) In : Rock Mechanics and Rock Engineering.

Research output: Contribution to journalArticle

Rocks
Digital differential analyzers
rock
Computational efficiency
Stress concentration
3 Citations (Scopus)

Noncontact detection of earthquake-induced landslides by an enhanced image binarization method incorporating with Monte-Carlo simulation

Han, Z., Li, Y., Du, Y., Wang, W. & Chen, G., Jan 1 2019, In : Geomatics, Natural Hazards and Risk. 10, 1, p. 219-241 23 p.

Research output: Contribution to journalArticle

Open Access
landslide
earthquake
simulation
remote sensing
Sichuan earthquake 2008
1 Citation (Scopus)

Numerical simulation of debris-flow behavior based on the SPH method incorporating the Herschel-Bulkley-Papanastasiou rheology model

Han, Z., Su, B., Li, Y., Wang, W., Wang, W., Huang, J. & Chen, G., May 18 2019, In : Engineering Geology. 255, p. 26-36 11 p.

Research output: Contribution to journalArticle

rheology
Rheology
Debris
debris flow
Hydrodynamics

Observations of radially elongated particle flux induced by streamer in a linear magnetized plasma

Kin, F., fujisawa, A., Itoh, K., Kosuga, Y., Sasaki, M., Shigeru, I., Nagashima, Y., Yamada, T., Kasuya, N., Yamasaki, K., Hasamada, K., Zhang, B. Y., Kawachi, Y., Arakawa, H., Kobayashi, T. & Itoh, S. I., Apr 1 2019, In : Physics of Plasmas. 26, 4, 042306.

Research output: Contribution to journalArticle

flux (rate)
cylindrical plasmas
normal density functions
ballistics
turbulence

Oral administration of a medium containing L-citrulline-producing live bacteria reduces body temperature in chicks

Tran, P. V., Do, P. H., Han, G., Bahry, M. A., Yang, H., Chowdhury, V. S. & Furuse, M., Jan 1 2019, In : Journal of Poultry Science. 56, 4, p. 285-289 5 p.

Research output: Contribution to journalComment/debate

Open Access
citrulline
oral administration
body temperature
chicks
bacteria
16 Citations (Scopus)

Parallel computing of three-dimensional discontinuous deformation analysis based on OpenMP

Peng, X., Chen, G., Yu, P., Zhang, Y., Guo, L., Wang, C., Cheng, X. & Niu, H., Feb 1 2019, In : Computers and Geotechnics. 106, p. 304-313 10 p.

Research output: Contribution to journalArticle

Digital differential analyzers
parallel computing
Parallel processing systems
Subroutines
Computational efficiency
5 Citations (Scopus)

Practical application of the coupled DDA-SPH method in dynamic modeling for the formation of landslide dam

Wang, W., Yin, K., Chen, G., Chai, B., Han, Z. & Zhou, J., May 1 2019, In : Landslides. 16, 5, p. 1021-1032 12 p.

Research output: Contribution to journalArticle

Digital differential analyzers
Landslides
Dams
landslide
dam