Division for Experimental Natural Science

Research Output 1980 2020

2020
2 Citations (Scopus)

CPU-accelerated explicit discontinuous deformation analysis and its application to landslide analysis

Peng, X., Yu, P., Chen, G., Xia, M. & Zhang, Y., Jan 1 2020, In : Applied Mathematical Modelling. 77, p. 216-234 19 p.

Research output: Contribution to journalArticle

Landslide
Landslides
Program processors
OpenMP
Computational efficiency
2019
3 Citations (Scopus)

A method for microscopic unsaturated soil-water interaction analysis based on DDA

Guo, L., Li, T., Chen, G., Yu, P., Peng, X. & Yang, D., Apr 1 2019, In : Computers and Geotechnics. 108, p. 143-151 9 p.

Research output: Contribution to journalArticle

soil water
Soils
Water
soil
mechanics

An acute increase in water temperature can increase free amino acid concentrations in the blood, brain, liver, and muscle in goldfish (Carassius auratus)

Wang, Y., Han, G., Pham, C. V., Koyanagi, K., Song, Y., Sudo, R., Lauwereyns, J. M. J., Cockrem, J. F., Furuse, M. & Surchowdhury, V., Aug 15 2019, In : Fish Physiology and Biochemistry. 45, 4, p. 1343-1354 12 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
Liver
free amino acids

A newly identified mutation in the PEX26 gene is associated with a milder form of Zellweger spectrum disorder

Tanaka, A. J., Okumoto, K., Tamura, S., Abe, Y., Hirsch, Y., Deng, L., Ekstein, J., Chung, W. K. & Fujiki, Y., Jan 1 2019, In : Cold Spring Harbor Molecular Case Studies. 5, 1, a003483.

Research output: Contribution to journalArticle

Zellweger Syndrome
Peroxisomes
Fibroblasts
Mutation
Genes

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Low Temperature Physics. 45, 4, p. 376-379 4 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Fizika Nizkikh Temperatur. 45, 4, p. 434-438 5 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography

Nishiyama, R., Ariga, A., Ariga, T., Lechmann, A., Mair, D., Pistillo, C., Scampolia, P., Valla, P. G., Vladymyrov, M., Ereditato, A. & Schlunegger, F., 2019, In : Scientific Reports. 6970.

Research output: Contribution to journalArticle

Open Access

Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography

Nishiyama, R., Ariga, A., Ariga, T., Lechmann, A., Mair, D., Pistillo, C., Scampoli, P., Valla, P. G., Vladymyrov, M., Ereditato, A. & Schlunegger, F., Dec 1 2019, In : Scientific reports. 9, 1, 6970.

Research output: Contribution to journalArticle

Open Access
Mesons
Ice Cover
Radiography
Ice
Switzerland

Boulder size and shape distributions on asteroid Ryugu

Michikami, T., Honda, C., Miyamoto, H., Hirabayashi, M., Hagermann, A., Irie, T., Nomura, K., Ernst, C. M., Kawamura, M., Sugimoto, K., Tatsumi, E., Morota, T., Hirata, N., Noguchi, T., Cho, Y., Kameda, S., Kouyama, T., Yokota, Y., Noguchi, R., Hayakawa, M. & 16 others, Hirata, N., Honda, R., Matsuoka, M., Sakatani, N., Suzuki, H., Yamada, M., Yoshioka, K., Sawada, H., Hemmi, R., Kikuchi, H., Ogawa, K., Watanabe, S. I., Tanaka, S., Yoshikawa, M., Tsuda, Y. & Sugita, S., Oct 1 2019, In : Icarus. 331, p. 179-191 13 p.

Research output: Contribution to journalArticle

Open Access
boulder
asteroids
asteroid
navigation
Japanese spacecraft

Central regulation of feeding behavior through neuropeptides and amino acids in neonatal chicks

Tran, P. V., Surchowdhury, V. & Furuse, M., Aug 1 2019, In : Amino Acids. 51, 8, p. 1129-1152 24 p.

Research output: Contribution to journalReview article

Feeding Behavior
Neuropeptides
Amino Acids
Chickens
Eating
1 Citation (Scopus)
plasma turbulence
method of moments
cylindrical plasmas
tomography
moments
3 Citations (Scopus)

Cortisol responses of goldfish (Carassius auratus) to air exposure, chasing, and increased water temperature

Cockrem, J. F., Bahry, M. A. & Surchowdhury, V., Jan 1 2019, In : General and Comparative Endocrinology. 270, p. 18-25 8 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
cortisol
Hydrocortisone
5 Citations (Scopus)
Landslides
landslide
Computer simulation
submarine landslide
simulation
4 Citations (Scopus)

Distributed-Spring Edge-to-Edge Contact Model for Two-Dimensional Discontinuous Deformation Analysis

Yu, P., Zhang, Y., Peng, X., Chen, G. & Zhao, J. X., Jan 1 2019, In : Rock Mechanics and Rock Engineering.

Research output: Contribution to journalArticle

Digital differential analyzers
matrix
potential energy
stiffness
analysis

DMSO-Perturbing Assay for Identifying Promiscuous Enzyme Inhibitors

Tomohara, K., Adachi, I., Horino, Y., Kesamaru, H., Abe, H., Suyama, K. & Nose, T., Jan 1 2019, In : ACS Medicinal Chemistry Letters. 10, 6, p. 923-928 6 p.

Research output: Contribution to journalArticle

Enzyme Inhibitors
Dimethyl Sulfoxide
Assays
Enzymes
Conformations

Dried watermelon rind mash diet increases plasma l -citrulline level in chicks

Nguyen, L. T. N., Han, G., Yang, H., Ikeda, H., Eltahan, H. M., Surchowdhury, V. & Furuse, M., Jan 1 2019, In : Journal of Poultry Science. 56, 1, p. 65-70 6 p.

Research output: Contribution to journalComment/debate

Open Access
citrulline
mash
watermelons
powders
chicks

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat
8 Citations (Scopus)

Evaluation of impact force of rock landslides acting on structures using discontinuous deformation analysis

Yu, P., Zhang, Y., Peng, X., Wang, J., Chen, G. & Zhao, J. X., Oct 1 2019, In : Computers and Geotechnics. 114, 103137.

Research output: Contribution to journalArticle

Landslides
numerical method
sliding
landslide
Numerical methods

Evaluative processing of food images: Longer viewing for indecisive preference formation

Wolf, A., Ounjai, K., Takahashi, M., Kobayashi, S., Matsuda, T. & Lauwereyns, J. M. J., Jan 1 2019, In : Frontiers in Psychology. 10, MAR, 608.

Research output: Contribution to journalArticle

Open Access
Food Handling
Food
Personal Autonomy
Uncertainty

Extension and application of Discontinuous Deformation Analysis with a damped contact spring model

Yu, P., Chen, G., Peng, X., Guo, L. & Zhang, Y., Nov 2019, In : International Journal of Rock Mechanics and Mining Sciences. 123, 104123.

Research output: Contribution to journalArticle

Digital differential analyzers
Geotechnical engineering
shear flow
geotechnical engineering
End effectors
5 Citations (Scopus)

FASER's Physics Reach for Long-Lived Particles

FASER collaboration & Ariga, T., May 2019, In : Physical Review D. 99, 095011

Research output: Contribution to journalArticle

Open Access
Heat-Shock Proteins
heat shock proteins
Gene expression
Brain
chicks

Fourier-rectangular function analysis for cylindrical plasma images

Yamasaki, K., Fujisawa, A., Nagashima, Y., Moon, C., Inagaki, S., Kasuya, N., Kosuga, Y., Sasaki, M. & Yamada, T., Jul 28 2019, In : Journal of Applied Physics. 126, 4, 043304.

Research output: Contribution to journalArticle

cylindrical plasmas
Fourier series
Plasmas
Imaging techniques
Tomography
3 Citations (Scopus)

Heat stress biomarker amino acids and neuropeptide afford thermotolerance in chicks

Chowdhury, V. S., Jan 1 2019, In : Journal of Poultry Science. 56, 1, p. 1-11 11 p.

Research output: Contribution to journalReview article

Open Access
neuropeptides
heat tolerance
heat stress
biomarkers
neuropeptide Y

Hydra vulgaris exhibits day-night variation in behavior and gene expression levels

Kanaya, H. J., Kobayakawa, Y. & Itoh, T. Q., Mar 8 2019, In : Zoological Letters. 5, 1, 10.

Research output: Contribution to journalArticle

Open Access
Hydra
gene expression
genes
Cnidaria
photoperiod

Importance of Receptor Conformations in Docking Calculation-Based Risk Assessment for Endocrine Disruptors against Estrogen Receptor α

Kesamaru, H., Suyama, K. & Nose, T., Apr 10 2019, In : ACS Omega. 4, 4, p. 6620-6629 10 p.

Research output: Contribution to journalArticle

Open Access
Endocrine Disruptors
Estrogen Receptors
Risk assessment
Conformations
Ligands
10 Citations (Scopus)

Improvement of joint definition and determination in three-dimensional discontinuous deformation analysis

Peng, X., Chen, G., Yu, P., Zhang, Y. & Wang, J., Jun 1 2019, In : Computers and Geotechnics. 110, p. 148-160 13 p.

Research output: Contribution to journalArticle

Digital differential analyzers
simulation
mitigation
engineering
Disaster prevention
1 Citation (Scopus)

Improvement of Sensitivity and Reproducibility for Imaging of Endogenous Metabolites by Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry

Morikawa-Ichinose, T., Fujimura, Y., Murayama, F., Yamazaki, Y., Yamamoto, T., Wariishi, H. & Miura, D., Aug 15 2019, In : Journal of the American Society for Mass Spectrometry. 30, 8, p. 1512-1520 9 p.

Research output: Contribution to journalArticle

Sublimation
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Metabolites
Ionization
Mass spectrometry

Ion temperature measurement by laser-induced fluorescence spectroscopy in panta

Arakawa, H., Shigeru, I., Kosuga, Y., Sasaki, M., Kin, F., Hasamada, K., Yamasaki, K., Kobayashi, T., Yamada, T., Nagashima, Y., fujisawa, A., Kasuya, N., Itoh, K. & Itoh, S. I., Oct 1 2019, In : IEEJ Transactions on Electrical and Electronic Engineering. 14, 10, p. 1450-1454 5 p.

Research output: Contribution to journalArticle

Fluorescence spectroscopy
Temperature measurement
Plasma turbulence
Helicons
Lasers

Light-at-night exposure affects brain development through pineal allopregnanolone-dependent mechanisms

Haraguchi, S., Kamata, M., Tokita, T., Tashiro, K. I., Sato, M., Nozaki, M., Okamoto-Katsuyama, M., Shimizu, I., Han, G., Chowdhury, V. S., Lei, X. F., Miyazaki, T., Kim-Kaneyama, J. R., Nakamachi, T., Matsuda, K., Ohtaki, H., Tokumoto, T., Tachibana, T., Miyazaki, A. & Tsutsui, K., Sep 2019, In : eLife. 8

Research output: Contribution to journalArticle

Pregnanolone
Brain
Purkinje Cells
Light
Cell death

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Chowdhury, V. S., Jun 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
Body Temperature
heat tolerance
Leucine
body temperature
leucine

Modelling the flexural buckling failure of stratified rock slopes based on the multilayer beam model

Zhang, Y. J., Nian, T. K., Guo, X. S., Chen, G. & Zheng, L., May 1 2019, In : Journal of Mountain Science. 16, 5, p. 1170-1183 14 p.

Research output: Contribution to journalArticle

buckling
rock
modeling
German Federal Railways
energy

Multi-spring Edge-to-Edge Contact Model for Discontinuous Deformation Analysis and Its Application to the Tensile Failure Behavior of Rock Joints

Zhang, Y., Wang, J., Zhao, J. X., Chen, G., Yu, P. & Yang, T., Jan 1 2019, (Accepted/In press) In : Rock Mechanics and Rock Engineering.

Research output: Contribution to journalArticle

Rocks
Digital differential analyzers
rock
Computational efficiency
Stress concentration
2 Citations (Scopus)

Noncontact detection of earthquake-induced landslides by an enhanced image binarization method incorporating with Monte-Carlo simulation

Han, Z., Li, Y., Du, Y., Wang, W. & Chen, G., Jan 1 2019, In : Geomatics, Natural Hazards and Risk. 10, 1, p. 219-241 23 p.

Research output: Contribution to journalArticle

Open Access
landslide
earthquake
simulation
remote sensing
Sichuan earthquake 2008
1 Citation (Scopus)

Numerical simulation of debris-flow behavior based on the SPH method incorporating the Herschel-Bulkley-Papanastasiou rheology model

Han, Z., Su, B., Li, Y., Wang, W., Wang, W., Huang, J. & Chen, G., May 18 2019, In : Engineering Geology. 255, p. 26-36 11 p.

Research output: Contribution to journalArticle

rheology
Rheology
Debris
debris flow
Hydrodynamics

Observations of radially elongated particle flux induced by streamer in a linear magnetized plasma

Kin, F., fujisawa, A., Itoh, K., Kosuga, Y., Sasaki, M., Shigeru, I., Nagashima, Y., Yamada, T., Kasuya, N., Yamasaki, K., Hasamada, K., Zhang, B. Y., Kawachi, Y., Arakawa, H., Kobayashi, T. & Itoh, S. I., Apr 1 2019, In : Physics of Plasmas. 26, 4, 042306.

Research output: Contribution to journalArticle

flux (rate)
cylindrical plasmas
normal density functions
ballistics
turbulence
14 Citations (Scopus)

Parallel computing of three-dimensional discontinuous deformation analysis based on OpenMP

Peng, X., Chen, G., Yu, P., Zhang, Y., Guo, L., Wang, C., Cheng, X. & Niu, H., Feb 1 2019, In : Computers and Geotechnics. 106, p. 304-313 10 p.

Research output: Contribution to journalArticle

Digital differential analyzers
parallel computing
Parallel processing systems
Subroutines
Computational efficiency
3 Citations (Scopus)

Practical application of the coupled DDA-SPH method in dynamic modeling for the formation of landslide dam

Wang, W., Yin, K., Chen, G., Chai, B., Han, Z. & Zhou, J., May 1 2019, In : Landslides. 16, 5, p. 1021-1032 12 p.

Research output: Contribution to journalArticle

Digital differential analyzers
Landslides
Dams
landslide
dam

Receptor-binding affinities of bisphenol A and its next-generation analogs for human nuclear receptors

Liu, X., Sakai, H., Nishigori, M., Suyama, K., Nawaji, T., Ikeda, S., Nishigouchi, M., Okada, H., Matsushima, A., Nose, T., Shimohigashi, M. & Shimohigashi, Y., Aug 15 2019, In : Toxicology and Applied Pharmacology. 377, 114610.

Research output: Contribution to journalArticle

Cytoplasmic and Nuclear Receptors
Assays
Endocrine Disruptors
Peroxisome Proliferator-Activated Receptors
Competitive Binding

Roles of solitary eddy and splash in drift wave-zonal flow system in a linear magnetized plasma

Arakawa, H., Sasaki, M., Shigeru, I., Kosuga, Y., Kobayashi, T., Kasuya, N., Yamada, T., Nagashima, Y., Kin, F., fujisawa, A., Itoh, K. & Itoh, S. I., May 1 2019, In : Physics of Plasmas. 26, 5, 052305.

Research output: Contribution to journalArticle

Open Access
vortices
solitary waves
life (durability)
flux (rate)
damping

Solid Film Formation at the Tetradecane/Aqueous Hexadecyltrimethylammonium Bromide Solution Interface Studied by Interfacial Tensiometry and X-ray Reflectometry

Hayase, H., Imai, Y., Ina, T., Nitta, K., Tanida, H., Uruga, T. & Takiue, T., Jun 27 2019, In : Journal of Physical Chemistry B. 123, 25, p. 5377-5383 7 p.

Research output: Contribution to journalArticle

Phase Transition
Surface Tension
bromides
X-Rays
X rays

基于HBP本构模型的泥石流动力过程SPH数值模拟

Translated title of the contribution: Smoothed particle hydrodynamic numerical simulation of debris flow process based on Herschel-Bulkley-Papanastasiou constitutive modelHan, Z., Su, B., Li, Y. G., Wang, W., Wang, W. D., Huang, J. L. & Chen, G. Q., Jul 10 2019, In : Yantu Lixue/Rock and Soil Mechanics. 40, p. 477-485 and 510

Research output: Contribution to journalArticle

Non Newtonian liquids
non-Newtonian fluid
Non Newtonian flow
viscous flow
water wave
2018
2 Citations (Scopus)

A cold/ultracold neutron detector using fine-grained nuclear emulsion with spatial resolution less than 100 nm

Naganawa, N., Ariga, T., Awano, S., Hino, M., Hirota, K., Kawahara, H., Kitaguchi, M., Mishima, K., Shimizu, H. M., Tada, S., Tasaki, S. & Umemoto, A., Nov 1 2018, In : European Physical Journal C. 78, 11, 959.

Research output: Contribution to journalArticle

Neutron detectors
cold neutrons
nuclear emulsions
neutron counters
Emulsions
1 Citation (Scopus)

Active Confirmation Bias in the Evaluative Processing of Food Images

Ounjai, K., Kobayashi, S., Takahashi, M., Matsuda, T. & Lauwereyns, J. M. J., Dec 1 2018, In : Scientific reports. 8, 1, 16864.

Research output: Contribution to journalArticle

Food Handling
Cues
Food
Reaction Time
Decision Making
5 Citations (Scopus)

A gaze bias with coarse spatial indexing during a gambling task

Zommara, N. M., Takahashi, M., Ounjai, K. & Lauwereyns, J. M. J., Apr 1 2018, In : Cognitive Neurodynamics. 12, 2, p. 171-181 11 p.

Research output: Contribution to journalArticle

Gambling
Decision Making
Hand
Problem-Based Learning
Research Personnel
2 Citations (Scopus)

Analysis of spatiotemporal metabolomic dynamics for sensitively monitoring biological alterations in cisplatin-induced acute kidney injury

Irie, M., Hayakawa, E., Fujimura, Y., Honda, Y., Setoyama, D., Wariishi, H., Hyodo, F. & Miura, D., Jan 29 2018, In : Biochemical and Biophysical Research Communications. 496, 1, p. 140-146 7 p.

Research output: Contribution to journalArticle

Spatio-Temporal Analysis
Metabolomics
Environmental Monitoring
Acute Kidney Injury
Cisplatin
12 Citations (Scopus)

A new DDA model for kinematic analyses of rockslides on complex 3-D terrain

Zhang, H., Liu, S. G., Wang, W., Zheng, L., Zhang, Y. B., Wu, Y. Q., Han, Z., Li, Y. G. & Chen, G., May 1 2018, In : Bulletin of Engineering Geology and the Environment. 77, 2, p. 555-571 17 p.

Research output: Contribution to journalArticle

Kinematics
kinematics
Landslides
Formability
complex terrain
2 Citations (Scopus)

A new inference method for detecting an ongoing selective sweep

Fujito, N. T., Satta, Y., Hayakawa, T. & Takahata, N., Jan 1 2018, In : Genes and Genetic Systems. 93, 4, p. 149-161 13 p.

Research output: Contribution to journalArticle

Linkage Disequilibrium
Single Nucleotide Polymorphism
Alleles
Gene Frequency
Population

Angiotensin I converting enzyme-inhibiting peptides purified from elastase-degraded elastin prepared from pig aorta

Maeda, I., Kai, S., Taniguchi, S., Inoue, A., Li, H., Kesamaru, H. & Nose, T., Apr 1 2018, In : Current Enzyme Inhibition. 14, 1, p. 67-74 8 p.

Research output: Contribution to journalArticle

Elastin
Pancreatic Elastase
Peptidyl-Dipeptidase A
Aorta
Swine
11 Citations (Scopus)

An integrated method for rapid estimation of the valley incision by debris flows

Han, Z., Wang, W., Li, Y., Huang, J., Su, B., Tang, C., Chen, G. & Qu, X., Jan 8 2018, In : Engineering Geology. 232, p. 34-45 12 p.

Research output: Contribution to journalArticle

Debris
debris flow
valley
Erosion
study application