Division for Experimental Natural Science

Research Output 1980 2020

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2020

CPU-accelerated explicit discontinuous deformation analysis and its application to landslide analysis

Peng, X., Yu, P., Chen, G., Xia, M. & Zhang, Y., Jan 1 2020, In : Applied Mathematical Modelling. 77, p. 216-234 19 p.

Research output: Contribution to journalArticle

Landslide
Landslides
Computational efficiency
Iterative methods
Application programming interfaces (API)
2019
3 Citations (Scopus)

A method for microscopic unsaturated soil-water interaction analysis based on DDA

Guo, L., Li, T., Chen, G., Yu, P., Peng, X. & Yang, D., Apr 1 2019, In : Computers and Geotechnics. 108, p. 143-151 9 p.

Research output: Contribution to journalArticle

soil water
Soils
Water
soil
mechanics

An acute increase in water temperature can increase free amino acid concentrations in the blood, brain, liver, and muscle in goldfish (Carassius auratus)

Wang, Y., Han, G., Pham, C. V., Koyanagi, K., Song, Y., Sudo, R., Lauwereyns, J. M. J., Cockrem, J. F., Furuse, M. & Surchowdhury, V., Aug 15 2019, In : Fish Physiology and Biochemistry. 45, 4, p. 1343-1354 12 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
Liver
free amino acids

A newly identified mutation in the PEX26 gene is associated with a milder form of Zellweger spectrum disorder

Tanaka, A. J., Okumoto, K., Tamura, S., Abe, Y., Hirsch, Y., Deng, L., Ekstein, J., Chung, W. K. & Fujiki, Y., Jan 1 2019, In : Cold Spring Harbor Molecular Case Studies. 5, 1, a003483.

Research output: Contribution to journalArticle

Zellweger Syndrome
Peroxisomes
Fibroblasts
Mutation
Genes

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Low Temperature Physics. 45, 4, p. 376-379 4 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

A study on the reversibility of electric response induced by second sound in superfluid helium

Van Woensel, J. P. & Yayama, H., Apr 1 2019, In : Fizika Nizkikh Temperatur. 45, 4, p. 434-438 5 p.

Research output: Contribution to journalArticle

helium
acoustics
interruption
mesh
indication

Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography

Nishiyama, R., Ariga, A., Ariga, T., Lechmann, A., Mair, D., Pistillo, C., Scampoli, P., Valla, P. G., Vladymyrov, M., Ereditato, A. & Schlunegger, F., Dec 1 2019, In : Scientific reports. 9, 1, 6970.

Research output: Contribution to journalArticle

Open Access
Mesons
Ice Cover
Radiography
Ice
Switzerland

Bedrock sculpting under an active alpine glacier revealed from cosmic-ray muon radiography

Nishiyama, R., Ariga, A., Ariga, T., Lechmann, A., Mair, D., Pistillo, C., Scampolia, P., Valla, P. G., Vladymyrov, M., Ereditato, A. & Schlunegger, F., 2019, In : Scientific Reports. 6970.

Research output: Contribution to journalArticle

Open Access

Boulder size and shape distributions on asteroid Ryugu

Michikami, T., Honda, C., Miyamoto, H., Hirabayashi, M., Hagermann, A., Irie, T., Nomura, K., Ernst, C. M., Kawamura, M., Sugimoto, K., Tatsumi, E., Morota, T., Hirata, N., Noguchi, T., Cho, Y., Kameda, S., Kouyama, T., Yokota, Y., Noguchi, R., Hayakawa, M. & 16 others, Hirata, N., Honda, R., Matsuoka, M., Sakatani, N., Suzuki, H., Yamada, M., Yoshioka, K., Sawada, H., Hemmi, R., Kikuchi, H., Ogawa, K., Watanabe, S. I., Tanaka, S., Yoshikawa, M., Tsuda, Y. & Sugita, S., Oct 1 2019, In : Icarus. 331, p. 179-191 13 p.

Research output: Contribution to journalArticle

Open Access
boulder
asteroids
asteroid
navigation
Japanese spacecraft
plasma turbulence
method of moments
cylindrical plasmas
tomography
moments
3 Citations (Scopus)

Cortisol responses of goldfish (Carassius auratus) to air exposure, chasing, and increased water temperature

Cockrem, J. F., Bahry, M. A. & Surchowdhury, V., Jan 1 2019, In : General and Comparative Endocrinology. 270, p. 18-25 8 p.

Research output: Contribution to journalArticle

Goldfish
Carassius auratus
goldfish
cortisol
Hydrocortisone
2 Citations (Scopus)
Landslides
landslide
Computer simulation
submarine landslide
simulation

Distributed-Spring Edge-to-Edge Contact Model for Two-Dimensional Discontinuous Deformation Analysis

Yu, P., Zhang, Y., Peng, X., Chen, G. & Zhao, J. X., Jan 1 2019, In : Rock Mechanics and Rock Engineering.

Research output: Contribution to journalArticle

Digital differential analyzers
matrix
potential energy
stiffness
analysis

DMSO-Perturbing Assay for Identifying Promiscuous Enzyme Inhibitors

Tomohara, K., Adachi, I., Horino, Y., Kesamaru, H., Abe, H., Suyama, K. & Nose, T., Jan 1 2019, In : ACS Medicinal Chemistry Letters. 10, 6, p. 923-928 6 p.

Research output: Contribution to journalArticle

Enzyme Inhibitors
Dimethyl Sulfoxide
Assays
Enzymes
Conformations

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat

Estimation of particle flux driven by coherent mode using of statistical conditional averaging

Kawachi, Y., Shigeru, I., Hasamada, K., Yamasaki, K., Kin, F., Kosuga, Y., Sasaki, M., Nagashima, Y., Kasuya, N., Yamada, T., Zhang, B. & fujisawa, A., Jan 1 2019, In : Plasma and Fusion Research. 14, 1402090.

Research output: Contribution to journalArticle

Open Access
flux (rate)
Japan
time lag
templates
4 Citations (Scopus)

Evaluation of impact force of rock landslides acting on structures using discontinuous deformation analysis

Yu, P., Zhang, Y., Peng, X., Wang, J., Chen, G. & Zhao, J. X., Oct 1 2019, In : Computers and Geotechnics. 114, 103137.

Research output: Contribution to journalArticle

Landslides
numerical method
sliding
landslide
Numerical methods

Evaluative processing of food images: Longer viewing for indecisive preference formation

Wolf, A., Ounjai, K., Takahashi, M., Kobayashi, S., Matsuda, T. & Lauwereyns, J. M. J., Jan 1 2019, In : Frontiers in Psychology. 10, MAR, 608.

Research output: Contribution to journalArticle

Open Access
Food Handling
Food
Personal Autonomy
Uncertainty
2 Citations (Scopus)

FASER's Physics Reach for Long-Lived Particles

FASER collaboration & Ariga, T., May 2019, In : Physical Review D. 99, 095011

Research output: Contribution to journalArticle

Open Access
Heat-Shock Proteins
heat shock proteins
Gene expression
Brain
chicks

Hydra vulgaris exhibits day-night variation in behavior and gene expression levels

Kanaya, H. J., Kobayakawa, Y. & Itoh, T. Q., Mar 8 2019, In : Zoological Letters. 5, 1, 10.

Research output: Contribution to journalArticle

Open Access
Hydra
gene expression
genes
Cnidaria
photoperiod

Importance of Receptor Conformations in Docking Calculation-Based Risk Assessment for Endocrine Disruptors against Estrogen Receptor α

Kesamaru, H., Suyama, K. & Nose, T., Apr 10 2019, In : ACS Omega. 4, 4, p. 6620-6629 10 p.

Research output: Contribution to journalArticle

Open Access
Endocrine Disruptors
Estrogen Receptors
Risk assessment
Conformations
Ligands
6 Citations (Scopus)

Improvement of joint definition and determination in three-dimensional discontinuous deformation analysis

Peng, X., Chen, G., Yu, P., Zhang, Y. & Wang, J., Jun 1 2019, In : Computers and Geotechnics. 110, p. 148-160 13 p.

Research output: Contribution to journalArticle

Digital differential analyzers
simulation
mitigation
engineering
Disaster prevention

Improvement of Sensitivity and Reproducibility for Imaging of Endogenous Metabolites by Matrix-Assisted Laser Desorption/Ionization-Mass Spectrometry

Morikawa-Ichinose, T., Fujimura, Y., Murayama, F., Yamazaki, Y., Yamamoto, T., Wariishi, H. & Miura, D., Aug 15 2019, In : Journal of the American Society for Mass Spectrometry. 30, 8, p. 1512-1520 9 p.

Research output: Contribution to journalArticle

Sublimation
Matrix-Assisted Laser Desorption-Ionization Mass Spectrometry
Metabolites
Ionization
Mass spectrometry

Ion temperature measurement by laser-induced fluorescence spectroscopy in panta

Arakawa, H., Shigeru, I., Kosuga, Y., Sasaki, M., Kin, F., Hasamada, K., Yamasaki, K., Kobayashi, T., Yamada, T., Nagashima, Y., fujisawa, A., Kasuya, N., Itoh, K. & Itoh, S. I., Jan 1 2019, In : IEEJ Transactions on Electrical and Electronic Engineering.

Research output: Contribution to journalArticle

Fluorescence spectroscopy
Temperature measurement
Plasma turbulence
Helicons
Lasers

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Surchowdhury, V., Jun 1 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
Body Temperature
heat tolerance
Leucine
body temperature
leucine

Modelling the flexural buckling failure of stratified rock slopes based on the multilayer beam model

Zhang, Y. J., Nian, T. K., Guo, X. S., Chen, G. & Zheng, L., May 1 2019, In : Journal of Mountain Science. 16, 5, p. 1170-1183 14 p.

Research output: Contribution to journalArticle

buckling
rock
modeling
German Federal Railways
energy
2 Citations (Scopus)

Noncontact detection of earthquake-induced landslides by an enhanced image binarization method incorporating with Monte-Carlo simulation

Han, Z., Li, Y., Du, Y., Wang, W. & Chen, G., Jan 1 2019, In : Geomatics, Natural Hazards and Risk. 10, 1, p. 219-241 23 p.

Research output: Contribution to journalArticle

Open Access
landslide
earthquake
simulation
remote sensing
Sichuan earthquake 2008

Numerical simulation of debris-flow behavior based on the SPH method incorporating the Herschel-Bulkley-Papanastasiou rheology model

Han, Z., Su, B., Li, Y., Wang, W., Wang, W., Huang, J. & Chen, G., May 18 2019, In : Engineering Geology. 255, p. 26-36 11 p.

Research output: Contribution to journalArticle

rheology
Rheology
Debris
debris flow
Hydrodynamics

Observations of radially elongated particle flux induced by streamer in a linear magnetized plasma

Kin, F., fujisawa, A., Itoh, K., Kosuga, Y., Sasaki, M., Shigeru, I., Nagashima, Y., Yamada, T., Kasuya, N., Yamasaki, K., Hasamada, K., Zhang, B. Y., Kawachi, Y., Arakawa, H., Kobayashi, T. & Itoh, S. I., Apr 1 2019, In : Physics of Plasmas. 26, 4, 042306.

Research output: Contribution to journalArticle

flux (rate)
cylindrical plasmas
normal density functions
ballistics
turbulence
10 Citations (Scopus)

Parallel computing of three-dimensional discontinuous deformation analysis based on OpenMP

Peng, X., Chen, G., Yu, P., Zhang, Y., Guo, L., Wang, C., Cheng, X. & Niu, H., Feb 1 2019, In : Computers and Geotechnics. 106, p. 304-313 10 p.

Research output: Contribution to journalArticle

Digital differential analyzers
parallel computing
Parallel processing systems
Subroutines
Computational efficiency
2 Citations (Scopus)

Practical application of the coupled DDA-SPH method in dynamic modeling for the formation of landslide dam

Wang, W., Yin, K., Chen, G., Chai, B., Han, Z. & Zhou, J., May 1 2019, In : Landslides. 16, 5, p. 1021-1032 12 p.

Research output: Contribution to journalArticle

Digital differential analyzers
Landslides
Dams
landslide
dam

Receptor-binding affinities of bisphenol A and its next-generation analogs for human nuclear receptors

Liu, X., Sakai, H., Nishigori, M., Suyama, K., Nawaji, T., Ikeda, S., Nishigouchi, M., Okada, H., Matsushima, A., Nose, T., Shimohigashi, M. & Shimohigashi, Y., Aug 15 2019, In : Toxicology and Applied Pharmacology. 377, 114610.

Research output: Contribution to journalArticle

Cytoplasmic and Nuclear Receptors
Assays
Endocrine Disruptors
Peroxisome Proliferator-Activated Receptors
Competitive Binding

Roles of solitary eddy and splash in drift wave-zonal flow system in a linear magnetized plasma

Arakawa, H., Sasaki, M., Shigeru, I., Kosuga, Y., Kobayashi, T., Kasuya, N., Yamada, T., Nagashima, Y., Kin, F., fujisawa, A., Itoh, K. & Itoh, S. I., May 1 2019, In : Physics of Plasmas. 26, 5, 052305.

Research output: Contribution to journalArticle

Open Access
vortices
solitary waves
life (durability)
flux (rate)
damping

Solid Film Formation at the Tetradecane/Aqueous Hexadecyltrimethylammonium Bromide Solution Interface Studied by Interfacial Tensiometry and X-ray Reflectometry

Hayase, H., Imai, Y., Ina, T., Nitta, K., Tanida, H., Uruga, T. & Takiue, T., Jun 27 2019, In : Journal of Physical Chemistry B. 123, 25, p. 5377-5383 7 p.

Research output: Contribution to journalArticle

Phase Transition
Surface Tension
bromides
X-Rays
X rays
2018
1 Citation (Scopus)

A cold/ultracold neutron detector using fine-grained nuclear emulsion with spatial resolution less than 100 nm

Naganawa, N., Ariga, T., Awano, S., Hino, M., Hirota, K., Kawahara, H., Kitaguchi, M., Mishima, K., Shimizu, H. M., Tada, S., Tasaki, S. & Umemoto, A., Nov 1 2018, In : European Physical Journal C. 78, 11, 959.

Research output: Contribution to journalArticle

Neutron detectors
cold neutrons
nuclear emulsions
neutron counters
Emulsions
1 Citation (Scopus)

Active Confirmation Bias in the Evaluative Processing of Food Images

Ounjai, K., Kobayashi, S., Takahashi, M., Matsuda, T. & Lauwereyns, J. M. J., Dec 1 2018, In : Scientific reports. 8, 1, 16864.

Research output: Contribution to journalArticle

Food Handling
Cues
Food
Reaction Time
Decision Making
5 Citations (Scopus)

A gaze bias with coarse spatial indexing during a gambling task

Zommara, N. M., Takahashi, M., Ounjai, K. & Lauwereyns, J. M. J., Apr 1 2018, In : Cognitive Neurodynamics. 12, 2, p. 171-181 11 p.

Research output: Contribution to journalArticle

Gambling
Decision Making
Hand
Problem-Based Learning
Research Personnel
2 Citations (Scopus)

Analysis of spatiotemporal metabolomic dynamics for sensitively monitoring biological alterations in cisplatin-induced acute kidney injury

Irie, M., Hayakawa, E., Fujimura, Y., Honda, Y., Setoyama, D., Wariishi, H., Hyodo, F. & Miura, D., Jan 29 2018, In : Biochemical and Biophysical Research Communications. 496, 1, p. 140-146 7 p.

Research output: Contribution to journalArticle

Spatio-Temporal Analysis
Metabolomics
Environmental Monitoring
Acute Kidney Injury
Cisplatin
11 Citations (Scopus)

A new DDA model for kinematic analyses of rockslides on complex 3-D terrain

Zhang, H., Liu, S. G., Wang, W., Zheng, L., Zhang, Y. B., Wu, Y. Q., Han, Z., Li, Y. G. & Chen, G., May 1 2018, In : Bulletin of Engineering Geology and the Environment. 77, 2, p. 555-571 17 p.

Research output: Contribution to journalArticle

Kinematics
kinematics
Landslides
Formability
complex terrain
2 Citations (Scopus)

A new inference method for detecting an ongoing selective sweep

Fujito, N. T., Satta, Y., Hayakawa, T. & Takahata, N., Jan 1 2018, In : Genes and Genetic Systems. 93, 4, p. 149-161 13 p.

Research output: Contribution to journalArticle

Linkage Disequilibrium
Single Nucleotide Polymorphism
Alleles
Gene Frequency
Population

Angiotensin I converting enzyme-inhibiting peptides purified from elastase-degraded elastin prepared from pig aorta

Maeda, I., Kai, S., Taniguchi, S., Inoue, A., Li, H., Kesamaru, H. & Nose, T., Apr 1 2018, In : Current Enzyme Inhibition. 14, 1, p. 67-74 8 p.

Research output: Contribution to journalArticle

Elastin
Pancreatic Elastase
Peptidyl-Dipeptidase A
Aorta
Swine
10 Citations (Scopus)

An integrated method for rapid estimation of the valley incision by debris flows

Han, Z., Wang, W., Li, Y., Huang, J., Su, B., Tang, C., Chen, G. & Qu, X., Jan 8 2018, In : Engineering Geology. 232, p. 34-45 12 p.

Research output: Contribution to journalArticle

Debris
debris flow
valley
Erosion
study application

A Nuclear Emulsion Detector for the Muon Radiography of a Glacier Structure

Ariga, A., Ariga, T., Ereditato, A., Kaser, S., Lechmann, A., Mair, D., Nishiyama, R., Pistillo, C., Scampoli, P., Schlunegger, F. & Vladymyrov, M., Apr 30 2018, In : Instruments. 2, 2

Research output: Contribution to journalArticle

Open Access
17 Citations (Scopus)

Applying modified discontinuous deformation analysis to assess the dynamic response of sites containing discontinuities

Peng, X., Yu, P., Zhang, Y. & Chen, G., Nov 28 2018, In : Engineering Geology. 246, p. 349-360 12 p.

Research output: Contribution to journalArticle

dynamic response
Dynamic response
discontinuity
Seismic waves
seismic wave
1 Citation (Scopus)

Ataxin-2: A versatile posttranscriptional regulator and its implication in neural function

Lee, J., Kim, M., Itoh, T. & Lim, C., Nov 1 2018, In : Wiley Interdisciplinary Reviews: RNA. 9, 6, e1488.

Research output: Contribution to journalArticle

RNA
Neurodegenerative diseases
Neurodegenerative Diseases
Genes
Ataxin-2

Biochemical characterization of CYP505D6, a self-sufficient cytochrome P450 from the white-rot fungus Phanerochaete chrysosporium

Sakai, K., Matsuzaki, F., Wise, L., Sakai, Y., Jindou, S., Ichinose, H., Takaya, N., Kato, M., Wariishi, H. & Shimizu, M., Nov 1 2018, In : Applied and Environmental Microbiology. 84, 22, e01091-18.

Research output: Contribution to journalArticle

Phanerochaete
Phanerochaete chrysosporium
white-rot fungi
hydroxylation
Hydroxylation

Comparison of major statistical methods and their combination using matrix validation for landslide susceptibility mapping

Akbar, A. Q. & Chen, G., Jan 1 2018, In : lowland technology international. 20, 3, p. 401-412 12 p.

Research output: Contribution to journalArticle

Landslides
Statistical methods
Disasters
2 Citations (Scopus)

Dietary L-serine modifies free amino acid composition of maternal milk and lowers the body weight of the offspring in mice

Nagamachi, S., Nishigawa, T., Takakura, M., Ikeda, H., Kodaira, M., Yamaguchi, T., Surchowdhury, V., Yasuo, S. & Furuse, M., Feb 1 2018, In : Journal of Veterinary Medical Science. 80, 2, p. 235-241 7 p.

Research output: Contribution to journalArticle

maternal milk
amino acid composition
free amino acids
serine
Serine
1 Citation (Scopus)

Effect of Surface Freezing on Stability of Oil-in-Water Emulsions

Tokiwa, Y., Sakamoto, H., Takiue, T., Aratono, M., Matsubara, H. & Bain, C. D., May 29 2018, In : Langmuir. 34, 21, p. 6205-6209 5 p.

Research output: Contribution to journalArticle

Emulsions
Freezing
freezing
emulsions
Oils