Research Output 1971 2020

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Chapter
2019
1 Citation (Scopus)

Chapter 14: Theory of Active Particles and Drops Driven by Chemical Reactions: The Role of Hydrodynamics on Self-propulsion and Collective Behaviours

Yoshinaga, N. & Yabunaka, S., Jan 1 2019, Self-organized Motion: Physicochemical Design based on Nonlinear Dynamics. Lagzi, I., Pimienta, V., Suematsu, N. J., Nakata, S. & Kitahata, H. (eds.). 14 ed. Royal Society of Chemistry, p. 339-365 27 p. (RSC Theoretical and Computational Chemistry Series; vol. 2019-January, no. 14).

Research output: Chapter in Book/Report/Conference proceedingChapter

Propulsion
Chemical reactions
Hydrodynamics
Linear equations
Flow of fluids

Mechanisms of water oxidation using ruthenium, cobalt, copper, and iron molecular catalysts

Parent, A. R., Nakazono, T., Tsubonouchi, Y., Taira, N. & Sakai, K., Jan 1 2019, Advances in Inorganic Chemistry. van Eldik, R. & Hubbard, C. D. (eds.). Academic Press Inc., p. 197-240 44 p. (Advances in Inorganic Chemistry; vol. 74).

Research output: Chapter in Book/Report/Conference proceedingChapter

Ruthenium
Cobalt
Copper
Iron
Oxidation
2018

Cell death or survival against oxidative stress

Miyata, N., Okumoto, K. & Fujiki, Y., Jan 1 2018, Subcellular Biochemistry. Springer New York, p. 463-471 9 p. (Subcellular Biochemistry; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peroxisomes
Oxidative stress
Cell death
Catalase
Cell Survival
1 Citation (Scopus)

Earth's ionosphere: Theory and phenomenology of cowling channels

Yoshikawa, A. & Fujii, R., Apr 17 2018, Electric Currents in Geospace and Beyond. wiley, p. 427-443 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ionosphere
electric field
Names
Magnetosphere
Earth (planet)

Identification of peroxisomal protein complexes with PTS receptors, pex5 and pex7, in mammalian cells

Okumoto, K., Miyata, N. & Fujiki, Y., Jan 1 2018, Subcellular Biochemistry. Springer New York, p. 287-298 12 p. (Subcellular Biochemistry; vol. 89).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cells
Proteins
Purification
Protein Interaction Maps
Peroxisomes
1 Citation (Scopus)

Recent Solid-State NMR Studies of Hydrated Lipid Membranes

Umegawa, Y., Matsumori, N. & Murata, M., Jan 1 2018, Annual Reports on NMR Spectroscopy. Webb, G. A. (ed.). Academic Press Inc., p. 41-72 32 p. (Annual Reports on NMR Spectroscopy; vol. 94).

Research output: Chapter in Book/Report/Conference proceedingChapter

Membrane Lipids
lipids
Nuclear magnetic resonance
membranes
solid state

Statistical mechanical integral equation approach to reveal the solvation effect on hydrolysis free energy of ATP and its analogue

Yoshida, N. & Hirata, F., May 7 2018, The Role of Water in ATP Hydrolysis Energy Transduction by Protein Machinery. Springer Singapore, p. 69-85 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Solvation
Free energy
Integral equations
Hydrolysis
Adenosine Triphosphate

Theoretical studies of strong attractive interaction between macro-anions mediated by multivalent metal cations and related association behavior: Effective interaction between ATP-binding proteins can be regulated by hydrolysis

Akiyama, R., May 7 2018, The Role of Water in ATP Hydrolysis Energy Transduction by Protein Machinery. Springer Singapore, p. 53-67 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Anions
Macros
Cations
Hydrolysis
Carrier Proteins
2017

Blue native PAGE: Applications to study peroxisome biogenesis

Okumoto, K., Tamura, S. & Fujiki, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 197-205 9 p. (Methods in Molecular Biology; vol. 1595).

Research output: Chapter in Book/Report/Conference proceedingChapter

Native Polyacrylamide Gel Electrophoresis
Peroxisomes
Proteins
Membrane Proteins
Membranes

Establishment of time- and cell-specific RNAi in Caenorhabditis elegans

Hamakawa, M. & Hirotsu, T., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 67-79 13 p. (Methods in Molecular Biology; vol. 1507).

Research output: Chapter in Book/Report/Conference proceedingChapter

Caenorhabditis elegans
RNA Interference
Shock
Hot Temperature
Genetic Pleiotropy

Experimental observation of the spin hall effect using electronic nonlocal detection

Valenzuela, S. O. & Kimura, T., Dec 21 2017, Spin Current. Oxford University Press, p. 247-263 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Hall effect
electronics
electrodes
layouts
masks
3 Citations (Scopus)

Functions of multiple clamp and clamp-loader complexes in eukaryotic DNA replication

Ohashi, E. & Tsurimoto, T., Jan 1 2017, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 135-162 28 p. (Advances in Experimental Medicine and Biology; vol. 1042).

Research output: Chapter in Book/Report/Conference proceedingChapter

Replication Protein C
Loaders
Clamping devices
Proliferating Cell Nuclear Antigen
DNA Replication

Generation of peroxisome-deficient somatic animal cell mutants

Okumoto, K. & Fujiki, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 319-327 9 p. (Methods in Molecular Biology; vol. 1595).

Research output: Chapter in Book/Report/Conference proceedingChapter

Peroxisomes
Cricetulus
Ovary
Genes
Inborn Genetic Diseases

Hydrogenation

Makida, Y. & Kuwano, R., 2017, Science of Synthesis: N-Heterocyclic Carbenes in Catalytic Organic Synthesis. Thieme, p. 261-283

Research output: Chapter in Book/Report/Conference proceedingChapter

Hydrogenation
Alkynes
Alkenes
Ligands
Atoms

Introduction of spin torques

Kimura, T., Dec 21 2017, Spin Current. Oxford University Press, p. 351-381 31 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

torque
conduction electrons
angular momentum
magnetization
magnetic domains

Magnetization switching due to nonlocal spin injection

Kimura, T. & Otani, Y., Dec 21 2017, Spin Current. Oxford University Press, p. 417-427 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

electron spin
injection
magnetization
electrons
electric fields

Molecular aspects of solvation investigated using statistical mechanics

Yoshida, N. & Nishiyama, K., Jan 1 2017, Handbook of Computational Chemistry. Springer International Publishing, p. 963-979 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Statistical mechanics
Solvation
chemical reactions
Mechanics
Statistical Mechanics
1 Citation (Scopus)

NMR studies on natural product-stereochemical determination and conformational analysis in solution and in membrane

Matsumori, N. & Murata, M., Nov 23 2017, Experimental Approaches of NMR Spectroscopy: Methodology and Application to Life Science and Materials Science. Springer Singapore, p. 383-414 32 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Biological Products
Nuclear magnetic resonance
Membranes
Spectroscopy
Lipids

Peroxisomal membrane and matrix protein import using a semi-intact mammalian cell system

Okumoto, K., Honsho, M., Liu, Y. & Fujiki, Y., Jan 1 2017, Methods in Molecular Biology. Humana Press Inc., p. 213-219 7 p. (Methods in Molecular Biology; vol. 1595).

Research output: Chapter in Book/Report/Conference proceedingChapter

Membrane Proteins
Peroxisomes
Proteins
Plasmalogens
Metabolic Networks and Pathways
2016

Frequency-domain electro-optic response of chiral smectic liquid crystals

Kimura, Y. & Hayakawa, R., Apr 19 2016, Molecular and Colloidal Electro-optics. CRC Press, p. 525-549 25 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Smectic liquid crystals
Electrooptical effects
2 Citations (Scopus)

Hypocenter migration and crustal seismic velocity distribution observed for the inland earthquake swarms induced by the 2011 Tohoku-Oki earthquake in NE Japan: Implications for crustal fluid distribution and crustal permeability

Okada, T., Matsuzawa, T., Umino, N., Yoshida, K., Hasegawa, A., Takahashi, H., Yamada, T., Kosuga, M., Takeda, T., Kato, A., Igarashi, T., Obara, K., Sakai, S., Saiga, A., Iidaka, T., Iwasaki, T., Hirata, N., Tsumura, N., Yamanaka, Y., Terakawa, T. & 9 others, Nakamichi, H., Okuda, T., Horikawa, S., Katao, H., Miura, T., Kubo, A., Matsushima, T., Goto, K. & Miyamachi, H., Oct 31 2016, Crustal Permeability. wiley, p. 307-323 17 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Tohoku earthquake 2011
earthquake swarm
seismic velocity
Velocity distribution
Earthquakes

Nanoelectronics with low power consumption

Kimura, T., Jan 1 2016, Energy Technology Roadmaps of Japan: Future Energy Systems Based on Feasible Technologies Beyond 2030. Springer Japan, p. 507-518 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Nanoelectronics
Transistors
Electric power utilization
LSI circuits
Heat generation
5 Citations (Scopus)

Transglutaminase in Invertebrates

Shibata, T. & Kawabata, S-I., Jan 1 2016, Transglutaminases: Multiple Functional Modifiers and Targets for New Drug Discovery. Springer Japan, p. 117-127 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Transglutaminases
Invertebrates
Horseshoe Crabs
Antigen-antibody reactions
Genetic Techniques
2015
3 Citations (Scopus)

226ra-210pb and228ra-228th dating of barite in submarine hydrothermal sulfide deposits collected at the okinawa trough and the Southern Mariana trough

Uchida, A., Toyoda, S., Ishibashi, J. & Nakai, SI., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 607-616 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

barite
trough
sulfide
crystal
dating method
2 Citations (Scopus)

Active rifting structures in iheya graben and adjacent area of the mid-okinawa trough observed through seismic reflection surveys

Ikegami, F., Tsuji, T., Kumagai, H., Ishibashi, J. & Takai, K., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 361-368 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

graben
seismic reflection
rifting
trough
faulting
5 Citations (Scopus)

Data reports: Chemical and isotopic compositions of hydrothermal fluids at snail, archaean, pika, and urashima sites in the Southern Mariana trough

Toki, T., Ishibashi, J. I., Noguchi, T., Tawata, M., Tsunogai, U., Yamanaka, T. & Nakamura, K., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 587-602 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal fluid
snail
Archean
trough
isotopic composition
4 Citations (Scopus)

Dating of hydrothermal mineralization in active hydrothermal fields in the Southern Mariana trough

Ishibashi, J., Shimada, K., Sato, F., Uchida, A., Toyoda, S., Takamasa, A., Nakai, SI., Hyodo, H., Sato, K., Kumagai, H. & Ikehata, K., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 289-300 12 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

trough
sulfide
hydrothermal activity
mineralization
breccia
3 Citations (Scopus)

ESR dating of barite in sea-floor hydrothermal sulfide deposits in the okinawa trough

Fujiwara, T., Toyoda, S., Uchida, A., Ishibashi, J. I., Nakai, SI. & Takamasa, A., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 369-386 18 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

electron spin resonance dating
barite
trough
seafloor
sulfide
4 Citations (Scopus)

Evaluating hydrothermal system evolution using geochronological dating and biological diversity analyses

Kumagai, H., Watanabe, H., Yahagi, T., Kojima, S., Nakai, SI., Toyoda, S. & Ishibashi, J., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 49-59 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal system
hydrothermal activity
trough
biological analysis
ore mineral

Evolution of Stalk/Spore Ratio in a Social Amoeba: Cell-to-Cell Interaction via a Signaling Chemical Shaped by Cheating Risk

Iwasa, Y., 2015, Trends in Mathematics. Springer International Publishing, Vol. 4. p. 113-117 5 p. (Trends in Mathematics; vol. 4).

Research output: Chapter in Book/Report/Conference proceedingChapter

Cell
Interaction
Altruism
Population Growth
Differentiate

Experimental assessment of microbial effects on chemical interactions between seafloor massive sulfides and seawater at 4ºc

Kato, S., Suzuki, K., Shibuya, T., Ishibashi, J., Ohkuma, M. & Yamagishi, A., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 95-103 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

massive sulfide
slab
seafloor
seawater
targeting

Gamma ray doses in water around sea floor hydrothermal area in the Southern Mariana trough

Toyoda, S., Banerjee, D., Kumagai, H., Miyazaki, J., Ishibashi, J. I., Mochizuki, N. & Kojima, S., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 603-606 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

trough
seafloor
electron spin resonance dating
seawater
water

Glycosaminoglycans and glycosylphosphatidylinositol-anchor proteins in development of caenorhabditis elegans

Nomura, K., Akiyoshi, S., Matsuda, A. & Nomura, K. H., Jan 1 2015, Glycoscience: Biology and Medicine. Springer Japan, p. 817-824 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Glycosylphosphatidylinositols
Caenorhabditis elegans
Glycosaminoglycans
Genes
Morphogenesis
28 Citations (Scopus)

Igneous layering in basaltic magma chambers

Namur, O., Abily, B., Boudreau, A. E., Blanchette, F., Bush, J. W. M., Ceuleneer, G., Charlier, B., Donaldson, C. H., Duchesne, J. C., Higgins, M. D., Morata, D., Nielsen, T. F. D., O’Driscoll, B., Pang, K. N., Peacock, T., Spandler, C. J., Toramaru, A. & Veksler, I. V., Jan 1 2015, Layered Intrusions. Springer Netherlands, p. 75-152 78 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

magma chamber
crystal
magma
mineral
layered intrusion

Immediate change of radiation doses from hydrothermal deposits

Toyoda, S., Sato, F., Uchida, A. & Ishibashi, J., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 621-624 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal deposit
research vessel
trough
spectrometer
sulfide
1 Citation (Scopus)

Interdisciplinary studies: Introduction of TAIGA concept

Urabe, T., Ishibashi, J. I., Sunamura, M., Okino, K., Takai, K. & Suzuki, K., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 1-10 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

seafloor
advection
microbial activity
fluid
chemosynthesis

Lateral spin transport (diffusive spin current)

Kimura, T., Sep 16 2015, Handbook of Spintronics. Springer Netherlands, p. 1577-1596 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Ferromagnetic materials
Induced currents
Transport properties
Nanostructures
Magnetization
4 Citations (Scopus)

Mineralogical and geochemical characteristics of hydrothermal minerals collected from hydrothermal vent ffields in the Southern Mariana spreading center

Ikehata, K., Suzuki, R., Shimada, K., Ishibashi, J. I. & Urabe, T., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 275-288 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal vent
spreading center
sulfide
mid-ocean ridge
mineralization

Observation of ultrafast photoinduced dynamics in strongly correlated organic materials

Onda, K., Jan 1 2015, Springer Series in Chemical Physics. Springer New York LLC, p. 179-201 23 p. (Springer Series in Chemical Physics; vol. 112).

Research output: Chapter in Book/Report/Conference proceedingChapter

organic materials
Electron correlations
Vibrational spectroscopy
Pulse compression
Photoemission
4 Citations (Scopus)

Occurrence of hydrothermal alteration minerals at the jade hydrothermal field, in the izena hole, mid-okinawa trough

Miyoshi, Y., Ishibashi, J. I., Shimada, K., Ooki, M., Uehara, S., Yoshizumi, R., Watanabe, S. & Urabe, T., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 567-586 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal alteration
chlorite
trough
venting
mineral
29 Citations (Scopus)

Okinawa trough: Hydrothermal activity in the okinawa trough back-arc basin: Geological background and hydrothermal mineralization

Ishibashi, J. I., Ikegami, F., Tsuji, T. & Urabe, T., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 337-360 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal activity
trough
mineralization
seafloor
hydrothermal system

OSL dating of sea floor sediments at the okinawa trough

Varma, V., Toyoda, S., Isono, Y., Uchida, A., Banerjee, D., Singhvi, A. K. & Ishibashi, J., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 617-620 4 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

luminescence dating
trough
seafloor
sediment
hydrothermal deposit
4 Citations (Scopus)

Pore fluid chemistry beneath active hydrothermal fields in the mid-okinawa trough: Results of shallow drillings by BMS during taiga11 cruise

Ishibashi, J. I., Miyoshi, Y., Tanaka, K., Omori, E., Takahashi, Y., Furuzawa, Y., Yamanaka, T., Kawagucci, S., Miyazaki, J., Konno, U., Watanabe, S., Yanagawa, K., Yoshizumi, R. & Urabe, T., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 535-560 26 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

trough
seafloor
drilling
fluid
mud

Quantification of microbial communities in hydrothermal vent habitats of the southern mariana trough and the mid-okinawa trough

Yanagawa, K., Ishibashi, J., Arai, T., Urabe, T. & Sunamura, M., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 61-69 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

hydrothermal vent
microbial community
trough
habitat
hydrothermal fluid

Rheological aspects of conformational change and molecular aggregation of macromolecules

Maki, Y., Jan 1 2015, Nano/Micro Science and Technology in Biorheology: Principles, Methods, and Applications. Springer Japan, p. 7-41 35 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Macromolecules
Polymers
Agglomeration
Intrinsically Disordered Proteins
Polymethyl Methacrylate
2 Citations (Scopus)

Sediment–pore water system associated with native sulfur formation at jade hydrothermal field in okinawa trough

Yokoyama, Y., Takahashi, Y., Miyoshi, Y., Ishibashi, J. & Kawagucci, S., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 405-419 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

porewater
trough
hydrothermal fluid
sulfur
seawater
4 Citations (Scopus)

The characteristics of the seafloor massive sulfide deposits at the hakurei site in the izena hole, the middle okinawa trough

Yoshizumi, R., Miyoshi, Y. & Ishibashi, J. I., Jan 1 2015, Subseafloor Biosphere Linked to Hydrothermal Systems: TAIGA Concept. Springer Japan, p. 561-566 6 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

massive sulfide
trough
seafloor
barite
sphalerite
2014
10 Citations (Scopus)

Characteristic behavior of crowding macromolecules confined in cell-sized droplets

Yanagisawa, M., Sakaue, T. & Yoshikawa, K., Jan 1 2014, International Review of Cell and Molecular Biology. Elsevier Inc., p. 175-204 30 p. (International Review of Cell and Molecular Biology; vol. 307).

Research output: Chapter in Book/Report/Conference proceedingChapter

Macromolecules
Molecules
DNA
Lipids
Membrane Lipids

Low-Latitude Ionosphere and Thermosphere: Decadal Observations From the CHAMP Mission

Stolle, C. & Liu, H., May 19 2014, Modeling the Ionosphere-Thermosphere System. Wiley-Blackwell, Vol. 9780875904917. p. 259-272 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

CHAMP
thermosphere
ionosphere
radar
near infrared
1 Citation (Scopus)

Molecular basis for peroxisome biogenesis disorders

Fujiki, Y., Okumoto, K., Mukai, S. & Tamura, S., Feb 1 2014, Molecular Machines Involved in Peroxisome Biogenesis and Maintenance. Springer-Verlag Wien, p. 91-110 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Peroxisomes
Zellweger Syndrome
Genes
Defects
Membranes