Research Output

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2020

Knockout Mouse Models Provide Insight into the Biological Functions of CRL1 Components

Nakagawa, T., Nakayama, K. & Nakayama, K. I., Jan 1 2020, Advances in Experimental Medicine and Biology. Springer, p. 147-171 25 p. (Advances in Experimental Medicine and Biology; vol. 1217).

Research output: Chapter in Book/Report/Conference proceedingChapter

2019

Molecular pathophysiology of insulin depletion, mitochondrial dysfunction, and oxidative stress in Alzheimer’s disease brain

Nakabeppu, Y., May 7 2019, Advances in Experimental Medicine and Biology. Springer, p. 27-44 18 p. (Advances in Experimental Medicine and Biology; vol. 1128).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Origins of brain insulin and its function

Nakabeppu, Y., May 7 2019, Advances in Experimental Medicine and Biology. Springer, p. 1-11 11 p. (Advances in Experimental Medicine and Biology; vol. 1128).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2018

Structural basis of protein asn-glycosylation by oligosaccharyltransferases

Kohda, D., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 171-199 29 p. (Advances in Experimental Medicine and Biology; vol. 1104).

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)
2017

Lipid profiling by supercritical fluid chromatography/mass spectrometry

Yamada, T. & Bamba, T., Mar 1 2017, Neuromethods. Humana Press Inc., p. 109-131 23 p. (Neuromethods; vol. 125).

Research output: Chapter in Book/Report/Conference proceedingChapter

4 Citations (Scopus)

Neurodegeneration caused by accumulation of an oxidized base lesion, 8-oxoguanine, in nuclear and mitochondrial DNA: from animal models to human diseases.

Nakabeppu, Y., Apr 1 2017, The Base Excision Repair Pathway: Molecular Mechanisms and Role in Disease Development and Therapeutic Design . World Scientific Publishing Co. Pte Ltd, p. 523-556 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Protein-ligand interactions studied by NMR

Hiroaki, H. & Kohda, D., Nov 23 2017, Experimental Approaches of NMR Spectroscopy: Methodology and Application to Life Science and Materials Science. Springer Singapore, p. 579-600 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Separation of Lipids

Yamada, T., Taguchi, K. & Bamba, T., Feb 20 2017, Supercritical Fluid Chromatography: Handbooks in Separation Science. Elsevier Inc., p. 419-438 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Supercritical Fluid Chromatography

Jumhawan, U. & Bamba, T., Mar 22 2017, The Application of Green Solvents in Separation Processes. Elsevier Inc., p. 483-516 34 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)
2016

Pathogen-sensing by mincle: Function and molecular aspects

Nagata, M., Omahdi, Z. & Yamasaki, S., Jan 1 2016, C-Type Lectin Receptors in Immunity. Springer Japan, p. 15-34 20 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)
2015

Polar Lipid Profiling by Supercritical Fluid Chromatography/Mass Spectrometry Method

Yamada, T., Nagasawa, Y., Taguchi, K., Fukusaki, E. & Bamba, T., Apr 15 2015, Polar Lipids: Biology, Chemistry, and Technology. Elsevier Inc., p. 439-462 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

3 Citations (Scopus)

Post-translational modification of Tcf/Lef: New insights into the regulation of Wnt/β-catenin signaling

Ishitani, T., Sep 2 2015, Protein Modifications in Pathogenic Dysregulation of Signaling. Springer Japan, p. 327-342 16 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Structural biology of oligosaccharyltransferase (ost)

Matsumoto, S., Nyirenda, J. & Kohda, D., Jan 1 2015, Glycoscience: Biology and Medicine. Springer Japan, p. 437-445 9 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Temporal coding of insulin signaling

Kubota, H. & Kuroda, S., Sep 2 2015, Protein Modifications in Pathogenic Dysregulation of Signaling. Springer Japan, p. 95-109 15 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2014

Context-dependent bidirectional modulation of Wnt/β-catenin signaling

Ishitani, T., Nov 1 2014, New Principles in Developmental Processes. Springer Japan, Vol. 9784431546344. p. 213-225 13 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

What have we learned from cultured adult dorsal root ganglion neurons?

Sango, K., Niimi, N., Tsukamoto, M., Utsunomiya, K., Sakumi, K., Nakabeppu, Y., Kadoya, T. & Horie, H., Jan 1 2014, Ganglion Cells: Morphology, Functional Development and Role in Disease. Nova Science Publishers, Inc., p. 125-148 24 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

2012

An improved restriction enzyme accessibility assay for analyzing changes in chromatin structure in samples of limited cell number

Ohkawa, Y., Mallappa, C., Vallaster, C. S. D. & Imbalzano, A. N., Jan 2 2012, Myogenesis: Methods and Protocols. DiMario, J. (ed.). p. 531-542 12 p. (Methods in Molecular Biology; vol. 798).

Research output: Chapter in Book/Report/Conference proceedingChapter

7 Citations (Scopus)

Isolation of nuclei from skeletal muscle satellite cells and myofibers for use in chromatin immunoprecipitation assays

Ohkawa, Y., Mallappa, C., Vallaster, C. S. D. & Imbalzano, A. N., Jan 2 2012, Myogenesis: Methods and Protocols. DiMario, J. (ed.). p. 517-530 14 p. (Methods in Molecular Biology; vol. 798).

Research output: Chapter in Book/Report/Conference proceedingChapter

9 Citations (Scopus)

Sensing necrotic cells

Miyake, Y. & Yamasaki, S., Apr 23 2012, Self and Nonself. p. 144-152 9 p. (Advances in Experimental Medicine and Biology; vol. 738).

Research output: Chapter in Book/Report/Conference proceedingChapter

50 Citations (Scopus)
2010

Prediction of compound-protein interactions with machine learning methods

Yamanishi, Y. & Kashima, H., Dec 1 2010, Chemoinformatics and Advanced Machine Learning Perspectives: Complex Computational Methods and Collaborative Techniques. IGI Global, p. 304-317 14 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Supervised Inference of Metabolic Networks from the Integration of Genomic Data and Chemical Information

Yamanishi, Y., Apr 19 2010, Elements of Computational Systems Biology. John Wiley and Sons, p. 189-211 23 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

5 Citations (Scopus)
2007

DNA Replication and Transcription

Nakabeppu, Y., Maki, H. & Sekiguchi, M., 2007, Genomics and Genetics: From Molecular Details to Analysis and Techniques. Meyers, R. A. (ed.). Weinheim, Germany: Wiley-VCH, Vol. 1. p. 47-74 8 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Prevention of the Mutagenecity and Cytotoxicity of Oxidized Purine Nucleotides

Nakabeppu, Y., Behmanesh, M., Ymaguchi, H., Tsuchimoto, D. & Kunihiko, S., 2007, Oxidative Damage to Nucleic Acids. Evans, MD. & Cooke, MS. (eds.). Landes Bioscience, Springer Science+Business Media, p. 40-53

Research output: Chapter in Book/Report/Conference proceedingChapter

1996

DNA Replication and Transcription

Maki, H., Nakabeppu, Y. & Mutsuo, S., 1996, Molecular Biology and Biotechnology: A comprehensive Desk Reference. Meyers, R. A. (ed.). New York, NY, USA: VCH Publishers, p. 86-96 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1995

DNA Replication and Transcription

Nakabeppu, Y., Maki, H. & Mutsuo, S., 1995, Molecular Biology and Biotechnology: A comprehensive Desk Reference. Meyers, R. A. (ed.). New York, NY, USA: VCH Publishers, p. 234-238 5 p.

Research output: Chapter in Book/Report/Conference proceedingChapter