Research Output 1979 2019

Filter
Conference contribution
2018

DegSampler: Collapsed Gibbs sampler for detecting E3 binding sites

Maruyama, O. & Matsuzaki, F., Dec 6 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. 8567448. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Binding sites
Binding Sites
Proteins
Substrates
Probability distributions

Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity

Konishi, K., Fujii, M., Kunida, K., Uda, S. & Kuroda, S., Feb 7 2018, 2017 Asian Control Conference, ASCC 2017. Institute of Electrical and Electronics Engineers Inc., p. 1428-1431 4 p. (2017 Asian Control Conference, ASCC 2017; vol. 2018-January).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Nonlinear Estimation
Function Estimation
Autoregressive Model
Nonlinear Function
Nonlinear Model

Matrix rank minimization approach to signal recovery and nonlinear function estimation for nonlinear ARX model with input nonlinearity

Konishi, K., Fujii, M., Kunida, K., Uda, S. & Kuroda, S., Feb 8 2018, Control Conference (ASCC), 2017 11th Asian. IEEE

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Recovery
Signal transduction
Systems Biology

Sparse Gaussian graphical model with missing values

Uda, S. & Kubota, H., Jan 8 2018, Proceedings of the 21st Conference of Open Innovations Association, FRUCT 2017. IEEE Computer Society, p. 336-343 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Signal transduction
Molecular interactions
Factorization
Genes
Proteins
2016

Synthetic quorum sensing as a tunable cell density sensor-regulator for dynamic metabolic engineering

Hanai, T. & Soma, Y., Jan 1 2016, Metabolic Engineering 11. AIChE, p. 181-182 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015

Development of μtas for high-throughput screening of nad(p)-dependent oxidoreductases

Shimokihara, S., Shitara, S., Oyobiki, R., Watanabe, T., Einaga, Y., Matsumoto, Y., Fujiwara, K., Horisawa, K. & Doi, N., Jan 1 2015, MicroTAS 2015 - 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences. Chemical and Biological Microsystems Society, p. 1302-1304 3 p. (MicroTAS 2015 - 19th International Conference on Miniaturized Systems for Chemistry and Life Sciences).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Screening
Throughput
Microfluidics
Biological fuel cells
Sorting
2010
15 Citations (Scopus)

Regulation of osteoclast apoptosis by bcl-2 family protein bim and caspase-3

Tanaka, S., Wakeyama, H., Akiyama, T., Takahashi, K., Amano, H., Nakayama, K. & Nakamura, K., Dec 1 2010, Osteoimmunology: Interactions of the Immune and Skeletal Systems II. Choi, Y. (ed.). p. 111-116 6 p. (Advances in Experimental Medicine and Biology; vol. 658).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Osteoclasts
Caspase 3
Apoptosis
Proteins
Chemical activation
2009
49 Citations (Scopus)

Link propagation: A fast semi-supervised learning algorithm for link prediction

Kashima, H., Kato, T., Yamanishi, Y., Sugiyama, M. & Tsuda, K., Dec 1 2009, Society for Industrial and Applied Mathematics - 9th SIAM International Conference on Data Mining 2009, Proceedings in Applied Mathematics 133. Vol. 3. p. 1093-1104 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Semi-supervised Learning
Conjugate gradient method
Supervised learning
Learning algorithms
Tensors
17 Citations (Scopus)

On pairwise kernels: An efficient alternative and generalization analysis

Kashima, H., Oyama, S., Yamanishi, Y. & Tsuda, K., Jul 23 2009, 13th Pacific-Asia Conference on Knowledge Discovery and Data Mining, PAKDD 2009. p. 1030-1037 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 5476 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pairwise
kernel
Collaborative filtering
Alternatives
Cartesian
28 Citations (Scopus)

Supervised bipartite graph inference

Yamanishi, Y., Dec 1 2009, Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference. p. 1841-1848 8 p. (Advances in Neural Information Processing Systems 21 - Proceedings of the 2008 Conference).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Supervised learning
Hilbert spaces
Topology
Proteins
2007

Inference of protein-protein interactions by using co-evolutionary information

Sato, T., Yamanishi, Y., Horimoto, K., Kanehisa, M. & Toh, H., 2007, Algebraic Biology - Second International Conference, AB 2007, Proceedings. Vol. 4545 LNCS. p. 322-333 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 4545 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Protein-protein Interaction
Distance Matrix
False Positive
Proteins
Mirrors
2004
6 Citations (Scopus)

A BP-Based Algorithm for Performing Bayesian Inference in Large Perceptron-Type Networks

Kabashima, Y. & Uda, S., 2004, International Conference on Algorithmic Learning Theory. p. 479-493

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2001
118 Citations (Scopus)

Regulation of intracellular localization of human MTH1, OGG1, and MYH proteins for repair of oxidative DNA damage

Nakabeppu, Y., Dec 1 2001, Progress in Nucleic Acid Research and Molecular Biology: Base Excsion Repair. Moldave, K. (ed.). San Dieg, CA, USA: Academic Press Inc., p. 75-94 20 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

DNA Damage
Mitochondria
DNA Glycosylases
Proteins
Nucleotides
1991

Transcription Factors Induced by Growth-Stimulating Agents

Nathans, D., Christy, BA., DuBois, RA., Lanahan, A., Sanders, LK. & Nakabeppu, Y., 1991, Origins of Human Cancer: A Comprehensive Review. Brugge, J., Curran, T., Harlow, E. & McCormick, F. (eds.). Plainview, New York: Cold Spring Harbor Laboratory Press, p. 353-364 12 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1990
4 Citations (Scopus)

Structure and expression of Alzheimer's amyloid β-protein precursor gene

Sasaki, H., Yoshikai, S. I., Izumi, R., Yamada, T., Furuya, H., Doh-Ura, K., Goto, I. & Sakaki, Y., Jan 1 1990, Molecular biology and genetics of Alzheimer's disease: proceedings of the International Symposium on Dementia: Molecular Biology and Genetics of Alzheimer's Disease. ICS884. Miyatake, T., Selkoe, D. J., Ihara, Y., Miyatake, T., Selkoe, D. J. & Ihara, Y. (eds.). Elsevier Science Publishers B.V., p. 105-112 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Amyloid beta-Protein Precursor
Amyloid beta-Peptides
Genes
1983

The genes involved in the repair of alkylated DNA in Escherichia coli K-12

Yamamoto, Y., Kataoka, H., Nakabeppu, Y., Tsuzuki, T. & Mutsuo, S., 1983, Cellular Responses to DNA Damage . Friedberg, EC. & Bridges, BR. (eds.). New York, NY, USA: Alan R. Liss, Inc., p. 271-278

Research output: Chapter in Book/Report/Conference proceedingConference contribution