Research Output 1979 2019

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Comment/debate
2019

Generation of human oogonia from induced pluripotent stem cells in vitro

Yamashiro, C., Sasaki, K., Yabuta, Y., Kojima, Y., Nakamura, T., Okamoto, I., Yokobayashi, S., Murase, Y., Ishikura, Y., Shirane, K., Sasaki, H., Yamamoto, T. & Saitou, M., Mar 1 2019, In : Obstetrical and Gynecological Survey. 74, 3, p. 158-159 2 p.

Research output: Contribution to journalComment/debate

Oogonia
Induced Pluripotent Stem Cells
In Vitro Techniques
2018

Correction: "UV damage-induced phosphorylation of HBO1 triggers CRL4DDB2-mediated degradation to regulate cell proliferation" [Molecular and Cellular Biology 36, 3, (2016) (394-406)] doi 10.1128/MCB.00809-15

Matsunuma, R., Niida, H., Ohhata, T., Kitagawa, K., Sakai, S., Uchida, C., Shiotani, B., Matsumoto, M., Nakayama, K., Ogura, H., Shiiya, N. & Kitagawa, M., Apr 1 2018, In : Molecular and Cellular Biology. 38, 7, e00572-17.

Research output: Contribution to journalComment/debate

Cell Biology
Molecular Biology
Phosphorylation
Cell Proliferation
Immunity
Transcription Factors
T-Lymphocytes
Gene Expression
proto-oncogene protein Spi-1

The anti-apoptotic ubiquitin conjugating enzyme BIRC6/BRUCE regulates autophagosome-lysosome fusion

Ikeda, F., Jul 3 2018, In : Autophagy. 14, 7, p. 1283-1284 2 p.

Research output: Contribution to journalComment/debate

Open Access
Ubiquitin-Conjugating Enzymes
Lysosomes
Autophagy
Apoptosis
Qa-SNARE Proteins
2017

Correction: Annular PIP 3 accumulation controls actin architecture and modulates cytotoxicity at the immunological synapse [The Journal of Experimental Medicine, 210, 12, November 18, (2013) 2721-2737]doi 10.1084/jem.20131324

Le Floc'h, A., Tanaka, Y., Bantilan, N. S., Voisinne, G., Altan-Bonnet, G., Fukui, Y. & Huse, M., Apr 1 2017, In : Journal of Experimental Medicine. 214, 4, 1 p.

Research output: Contribution to journalComment/debate

Immunological Synapses
Biomedical Research
Actins
Emotions

Erratum: Structure and function of human histone H3.Y nucleosome (Nucleic acids research (2016) 44 13 (6127-6141))

Kujirai, T., Horikoshi, N., Sato, K., Maehara, K., Machida, S., Osakabe, A., Kimura, H., Ohkawa, Y. & Kurumizaka, H., Apr 7 2017, In : Nucleic acids research. 45, 6, 1 p.

Research output: Contribution to journalComment/debate

Nucleosomes
Histones
Nucleic Acids
Research
3 Citations (Scopus)

SPAR, a lncRNA encoded mTORC1 inhibitor

Matsumoto, A., Clohessy, J. G. & Pandolfi, P. P., May 3 2017, In : Cell Cycle. 16, 9, p. 815-816 2 p.

Research output: Contribution to journalComment/debate

Long Noncoding RNA
Amino Acids
Peptides
mechanistic target of rapamycin complex 1
2016
3 Citations (Scopus)

Erratum: New Insight into the Role of the Calvin Cycle: Reutilization of CO2 Emitted through Sugar Degradation (Scientific Reports 5 (2016) (11617) DOI: 10.1038/srep11617)

Shimizu, R., Dempo, Y., Nakayama, Y., Nakamura, S., Bamba, T., Fukusaki, E. & Fukui, T., Jun 20 2016, In : Scientific Reports. 6, 27961.

Research output: Contribution to journalComment/debate

Erratum: Hyperactive mTOR signals in the proopiomelanocortin-expressing hippocampal neurons cause age-dependent epilepsy and premature death in mice (Scientific Reports (2016) 6 (22991) DOI: 10.1038/srep22991)

Matsushita, Y., Sakai, Y., Shimmura, M., Shigeto, H., Nishio, M., Akamine, S., Sanefuji, M., Ishizaki, Y., Torisu, H., Nakabeppu, Y., Suzuki, A., Takada, H. & Hara, T., Jun 10 2016, In : Scientific reports. 6, 27164.

Research output: Contribution to journalComment/debate

Erratum: Mutations in CDCA7 and HELLS cause immunodeficiency-centromeric instability-facial anomalies syndrome (Nature Communications (2015) 6 (7870) DOI: 10.1038/ncomms8870)

Thijssen, P. E., Ito, Y., Grillo, G., Wang, J., Velasco, G., Nitta, H., Unoki, M., Yoshihara, M., Suyama, M., Sun, Y., Lemmers, R. J. L. F., De Greef, J. C., Gennery, A., Picco, P., Kloeckener-Gruissem, B., Güngör, T., Reisli, I., Picard, C., Kebaili, K., Roquelaure, B. & 9 othersIwai, T., Kondo, I., Kubota, T., Van Ostaijen-Ten Dam, M. M., Van Tol, M. J. D., Weemaes, C., Francastel, C., Van Der Maarel, S. M. & Sasaki, H., Jun 22 2016, In : Nature communications. 7, 12003.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Novel methods for the treatment of liver fibrosis using in vivo direct reprogramming technology

Goya, T. & Suzuki, A., Jan 1 2016, In : Stem Cell Investigation. 2016, DEC, 92.

Research output: Contribution to journalComment/debate

Liver Cirrhosis
Technology
1 Citation (Scopus)

Relationship between 3-methyl-2,4-nonanedione concentration and intensity of light-induced off-odor in soy bean oil

Sano, T., Iwahashi, M., Imagi, J., Sato, T., Yamashita, T., Fukusaki, E. & Bamba, T., May 1 2016, In : Journal of Oleo Science. 65, 5, p. 447-450 4 p.

Research output: Contribution to journalComment/debate

Soybean Oil
Odors
Thermal desorption
3-methyl-2,4-nonanedione
Oils
70 Citations (Scopus)

The International Human Epigenome Consortium: A Blueprint for Scientific Collaboration and Discovery

Stunnenberg, H. G., Abrignani, S., Adams, D., de Almeida, M., Altucci, L., Amin, V., Amit, I., Antonarakis, S. E., Aparicio, S., Arima, T., Arrigoni, L., Arts, R., Asnafi, V., Badosa, M. E., Bae, J. B., Bassler, K., Beck, S., Berkman, B., Bernstein, B. E., Bilenky, M. & 210 othersBird, A., Bock, C., Boehm, B., Bourque, G., Breeze, C. E., Brors, B., Bujold, D., Burren, O., Bussemakers, M. J., Butterworth, A., Campo, E., Carrillo-de-Santa-Pau, E., Chadwick, L., Chan, K. M., Chen, W., Cheung, T. H., Chiapperino, L., Choi, N. H., Chung, H. R., Clarke, L., Connors, J. M., Cronet, P., Danesh, J., Dermitzakis, M., Drewes, G., Durek, P., Dyke, S., Dylag, T., Eaves, C. J., Ebert, P., Eils, R., Eils, J., Ennis, C. A., Enver, T., Feingold, E. A., Felder, B., Ferguson-Smith, A., Fitzgibbon, J., Flicek, P., Foo, R. S. Y., Fraser, P., Frontini, M., Furlong, E., Gakkhar, S., Gasparoni, N., Gasparoni, G., Geschwind, D. H., Glažar, P., Graf, T., Grosveld, F., Guan, X. Y., Guigo, R., Gut, I. G., Hamann, A., Han, B. G., Harris, R. A., Heath, S., Helin, K., Hengstler, J. G., Heravi-Moussavi, A., Herrup, K., Hill, S., Hilton, J. A., Hitz, B. C., Horsthemke, B., Hu, M., Hwang, J. Y., Ip, N. Y., Ito, T., Javierre, B. M., Jenko, S., Jenuwein, T., Joly, Y., Jones, S. J. M., Kanai, Y., Kang, H. G., Karsan, A., Kiemer, A. K., Kim, S. C., Kim, B. J., Kim, H. H., Kimura, H., Kinkley, S., Klironomos, F., Koh, I. U., Kostadima, M., Kressler, C., Kreuzhuber, R., Kundaje, A., Küppers, R., Larabell, C., Lasko, P., Lathrop, M., Lee, D. H. S., Lee, S., Lehrach, H., Leitão, E., Lengauer, T., Lernmark, Å., Leslie, R. D., Leung, G. K. K., Leung, D., Loeffler, M., Ma, Y., Mai, A., Manke, T., Marcotte, E. R., Marra, M. A., Martens, J. H. A., Martin-Subero, J. I., Maschke, K., Merten, C., Milosavljevic, A., Minucci, S., Mitsuyama, T., Moore, R. A., Müller, F., Mungall, A. J., Netea, M. G., Nordström, K., Norstedt, I., Okae, H., Onuchic, V., Ouellette, F., Ouwehand, W., Pagani, M., Pancaldi, V., Pap, T., Pastinen, T., Patel, R., Paul, D. S., Pazin, M. J., Pelicci, P. G., Phillips, A. G., Polansky, J., Porse, B., Pospisilik, J. A., Prabhakar, S., Procaccini, D. C., Radbruch, A., Rajewsky, N., Rakyan, V., Reik, W., Ren, B., Richardson, D., Richter, A., Rico, D., Roberts, D. J., Rosenstiel, P., Rothstein, M., Salhab, A., Sasaki, H., Satterlee, J. S., Sauer, S., Schacht, C., Schmidt, F., Schmitz, G., Schreiber, S., Schröder, C., Schübeler, D., Schultze, J. L., Schulyer, R. P., Schulz, M., Seifert, M., Shirahige, K., Siebert, R., Sierocinski, T., Siminoff, L., Sinha, A., Soranzo, N., Spicuglia, S., Spivakov, M., Steidl, C., Strattan, J. S., Stratton, M., Südbeck, P., Sun, H., Suzuki, N., Suzuki, Y., Tanay, A., Torrents, D., Tyson, F. L., Ulas, T., Ullrich, S., Ushijima, T., Valencia, A., Vellenga, E., Vingron, M., Wallace, C., Wallner, S., Walter, J., Wang, H., Weber, S., Weiler, N., Weller, A., Weng, A., Wilder, S., Wiseman, S. M., Wu, A. R., Wu, Z., Xiong, J., Yamashita, Y., Yang, X., Yap, D. Y., Yip, K. Y., Yip, S., Yoo, J. I., Zerbino, D., Zipprich, G. & Hirst, M., Nov 17 2016, In : Cell. 167, 5, p. 1145-1149 5 p.

Research output: Contribution to journalComment/debate

Blueprints
Cells
Health
Epigenomics
2015

CD30 ligand could be a new therapeutic target for central nervous system autoimmunity

Shinoda, K. & Yoshikai, Y., May 1 2015, In : Clinical and Experimental Neuroimmunology. 6, 2, p. 111-112 2 p.

Research output: Contribution to journalComment/debate

CD30 Ligand
Autoimmunity
Central Nervous System
Therapeutics

Erratum: Identification and Characterization of a Novel Small-Molecule Inhibitor of β-Catenin Signaling ((2014) 184 (2111-2122) DOI: 10.1016/j.ajpath.2014.04.002)

Delgado, E. R., Yang, J., So, J., Fanti, M., Leimgruber, S., Kahn, M., Ishitani, T., Shin, D., Wilson, G. M. & Monga, S. P., Jan 1 2015, In : American Journal of Pathology. 185, 10, 1 p., 2145.

Research output: Contribution to journalComment/debate

Genome
DNA
Research
Genes
2 Citations (Scopus)
DNA Glycosylases
Carcinogenesis
Cell Death
Neoplasms
4-iodo-2,5-dimethoxyphenylisopropylamine

Erratum: PSMC5, a 19S proteasomal ATPase, regulates cocaine action in the nucleus accumbens (PLoS ONE (2015) 10:5 (e0126710) DOI: 10.1371/journal.pone.0126710)

Ohnishi, Y. H., Ohnishi, Y. N., Nakamura, T., Mizuki, O., Kennedy, P. J., Ohkawa, Y., Nishi, A., Neve, R., Tsuzuki, T. & Nestler, E. J., Jun 25 2015, In : PloS one. 10, 6, e0131263.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Erratum: Identification of human MutY homolog (hMYH) as a repair enzyme for 2-hydroxyadenine in DNA and detection of multiple forms of hMYH located in nuclei and mitochondria (Nucleic Acids Res. (2000) 28 (1355-64))

Ohtsubo, T., Nishioka, K., Imaiso, Y., Iwai, S., Shimokawa, H., Oda, H., Fujiwara, T. & Nakabeppu, Y., Mar 23 2015, In : Nucleic acids research. 43, 7, p. 3870-3871 2 p.

Research output: Contribution to journalComment/debate

Forensic Anthropology
Nucleic Acids
Mitochondria
DNA
Enzymes
2 Citations (Scopus)

Phosphorylation of p27Kip1on serine 10 is required for its binding to CRM1 and nuclear export

Ishida, N., Hara, T., Kamura, T., Yoshida, M., Nakayama, K. & Nakayama, K., Mar 13 2015, In : Journal of Biological Chemistry. 290, 11, 1 p.

Research output: Contribution to journalComment/debate

Cell Nucleus Active Transport
Serine
Phosphorylation
2014

Erratum: A tripartite paternally methylated region within the Gpr1-Zdbf2 imprinted domain on mouse chromosome 1 identified by meDIP-on-chip (Nucleic Acids Research (2010) 38:15 (4929-4945)) DOI:10.1093/nar/gkq200)

Hiura, H., Sugawara, A., Ogawa, H., John, R. M., Miyauchi, N., Miyanari, Y., Horiike, T., Li, Y., Yaegashi, N., Sasaki, H., Kono, T. & Arima, T., Sep 15 2014, In : Nucleic acids research. 42, 16, 1 p.

Research output: Contribution to journalComment/debate

Chromosomes, Human, Pair 1
Nucleic Acids
Research

Erratum: Heterochromatin dynamics during the differentiation process revealed by the DNA methylation reporter mouse, MethylRO (Stem Cell Reports (2014) 2 (910-924))

Ueda, J., Maehara, K., Mashiko, D., Ichinose, T., Yao, T., Hori, M., Sato, Y., Kimura, H., Ohkawa, Y. & Yamagata, K., Jul 8 2014, In : Stem Cell Reports. 3, 1, 1 p.

Research output: Contribution to journalComment/debate

Heterochromatin
DNA Methylation
Stem Cells

Erratum: Regulation of SV40 large T-Antigen stability by reversible acetylation (Oncogene (2006) 25 (7391-7400) DOI: 10.1038/sj.onc.1209731)

Shimazu, T., Komatsu, Y., Nakayama, K., Fukazawa, H., Horinouchi, S. & Yoshida, M., Jul 17 2014, In : Oncogene. 33, 29, 1 p.

Research output: Contribution to journalComment/debate

Polyomavirus Transforming Antigens
Viral Tumor Antigens
Acetylation
Oncogenes
2013
1 Citation (Scopus)

Erratum: FosB-null mice display impaired adult hippocampal neurogenesis and spontaneous epilepsy with depressive behavior (Neuropsychopharmacology (2013) 38 (1374-1375) DOI: 10.1038/npp.2013.56)

Yutsudo, N., Kamada, T., Kajitani, K., Nomaru, H., Katogi, A., Ohnishi, Y. H., Ohnishi, Y. N., Takase, K. I., Kunihiko, S., Shigeto, H. & Nakabeppu, Y., Jun 1 2013, In : Neuropsychopharmacology. 38, 7, p. 1374-1375 2 p.

Research output: Contribution to journalComment/debate

Neurogenesis
Epilepsy
1 Citation (Scopus)

Erratum: The Skp2-SCF E3 ligase regulates akt ubiquitination, glycolysis, herceptin sensitivity, and tumorigenesis (Cell (2012) 149 (1098-1111))

Chan, C. H., Li, C. F., Yang, W. L., Gao, Y., Lee, S. W., Feng, Z., Huang, H. Y., Tsai, K. K. C., Flores, L. G., Shao, Y., Hazle, J. D., Yu, D., Wei, W., Sarbassov, D., Hung, M. C., Nakayama, K. & Lin, H. K., Nov 9 2012, In : Cell. 151, 4, p. 913-914 2 p.

Research output: Contribution to journalComment/debate

Locus- and domain-dependent control of DNA methylation at mouse B1 retrotransposons during male germ cell development (Genome Research (2011) 21 (2058-2066))

Ichiyanagi, K., Li, Y., Watanabe, T., Ichiyanagi, T., Fukuda, K., Kitayama, J., Yamamoto, Y., Kuramochi-Miyagawa, S., Nakano, T., Yabuta, Y., Seki, Y., Saitou, M. & Sasaki, H., Apr 1 2012, In : Genome Research. 22, 4, 1 p.

Research output: Contribution to journalComment/debate

Retroelements
DNA Methylation
Germ Cells
Genome
Research
2010

Erratum: Skp2 targeting suppresses tumorigenesis by Arf-p53-independent cellular senescence (Nature (2010) 464 (374-379))

Lin, H. K., Chen, Z., Wang, G., Nardella, C., Lee, S. W., Chan, C. H., Yang, W. L., Wang, J., Egia, A., Nakayama, K., Cordon-Cardo, C., Teruya-Feldstein, J. & Pandolfi, P. P., Jul 15 2010, In : Nature. 466, 7304, 1 p.

Research output: Contribution to journalComment/debate

Cell Aging
Carcinogenesis

Mutual regulation of protein-tyrosine phosphatase 20 and protein-tyrosine kinase Tec activities by tyrosine phosphorylation and dephosphorylation (Journal of Biological Chemistry (2004) 279, (10765-10775))

Aoki, N., Ueno, S., Mano, H., Yamasaki, S., Shiota, M., Miyazaki, H., Yamaguchi-Aoki, Y., Matsuda, T. & Ullrich, A., Oct 15 2010, In : Journal of Biological Chemistry. 285, 42, 1 p.

Research output: Contribution to journalComment/debate

Phosphorylation
Protein Tyrosine Phosphatases
Tyrosine
Tec protein-tyrosine kinase

USP19 deubiquitinating enzyme supports cell proliferation by stabilizing KPC1, a ubiquitin ligase for p27Kip1 (Molecular and Cellular Biology (2009) 29, 2, (547-558))

Lu, Y., Adegoke, O. A. J., Nepveu, A., Nakayama, K., Bedard, N., Cheng, D., Peng, J. & Wing, S. S., Jun 1 2009, In : Molecular and Cellular Biology. 29, 11, 1 p.

Research output: Contribution to journalComment/debate

Ligases
Ubiquitin
Cell Biology
Molecular Biology
Cell Proliferation
2007

APE1- and APE2-dependent DNA breaks in immunoglobulin class switch recombination (Journal of Experimental Medicine (November 26, 2007) 204: 12 (3017-3026))

Guikema, J. E. J., Linehan, E. K., Tsuchimoto, D., Nakabeppu, Y., Strauss, P. R., Stavnezer, J. & Schrader, C. E., Dec 24 2007, In : Journal of Experimental Medicine. 204, 13, 1 p.

Research output: Contribution to journalComment/debate

DNA Breaks
Immunoglobulin Isotypes
Genetic Recombination
Biomedical Research
2001
1 Citation (Scopus)

Erratum: Human Oggl, a protein involved in the repair of 8-oxoguanine, is inhibited by nitric oxide (Cancer Research (September 1, 2001) (6388-6393))

Jaiswal, M., LaRusso, N. F., Nishioka, K., Nakabeppu, Y. & Gores, G. J., Oct 15 2001, In : Cancer Research. 61, 20, 1 p.

Research output: Contribution to journalComment/debate

Nitric Oxide
Research
Neoplasms
Proteins
8-hydroxyguanine
2000

Erratum: A novel protein with RNA-binding motifs interacts with ataxin-2 (Human Molecular Genetics (2000) vol.9 (1303-1313))

Shibata, H., Huynh, D. P. & Pulst, S. M., 2000, In : Human Molecular Genetics. 9, 12, p. 1903 1 p.

Research output: Contribution to journalComment/debate

Medical Genetics
Molecular Biology
Proteins
Ataxin-2
RNA-Binding Motifs
1999

Erratum: Ubiquitin-dependent degradation of IκBα is mediated by a ubiquitin ligase Skp1/Cul1/F-box protein FWD1 (Proceedings of the National Academy of Sciences of the United States America (March 30, 1999) 96:7 (3859- 3863))

Hatakeyama, S., Kitagawa, M., Nakayama, K., Shirane, M., Matsumoto, M., Hattori, K., Higashi, H., Nakano, H., Okumura, K., Onoe, K., Good, R. A. & Nakayama, K., Jan 1 1999, In : Proceedings of the National Academy of Sciences of the United States of America. 96, 11, 1 p.

Research output: Contribution to journalComment/debate

F-Box Proteins
Ligases
Ubiquitin
1998
1 Citation (Scopus)
Alkylating Agents
DNA Repair
Genes
1997
Non-Receptor Type 6 Protein Tyrosine Phosphatase
Dendritic Cells
Macrophages
Pathology
1994

Correction: Co-stimulation with LFA-1 triggers apoptosis in γδ T cells on T cell receptor engagement (European Journal of Immunology (1994) 24 (10))

Matsumoto, Y., Hiromatsu, K., Saki, T., Kobayashi, Y., Kimura, Y., Usami, J., Shinzato, T., Maeda, K. & Yoshikai, Y., Nov 23 1994, In : European Journal of Immunology. 24, 11, 1 p.

Research output: Contribution to journalComment/debate

23 Citations (Scopus)

Sendai virus pneumonia: Evidence for the early recruitment of γδ T cells during the disease course

Ogasawara, T., Emoto, M., Kiyotani, K., Shimokata, K., Yoshida, T., Nagai, Y. & Yoshikai, Y., Jan 1 1994, In : Journal of Virology. 68, 6, p. 4022-4027 6 p.

Research output: Contribution to journalComment/debate

Sendai virus
disease course
pneumonia
Pneumonia
T-lymphocytes
1991
15 Citations (Scopus)

Genomic organization of the human-amyloid beta-protein precursor gene

Yoshikai, S. I., Sasaki, H., Doh-ura, K., Furuya, H. & Sakaki, Y., Jun 30 1991, In : Gene. 102, 2, p. 291-292 2 p.

Research output: Contribution to journalComment/debate

Molecular Sequence Data
Restriction Mapping
Protein Precursors
Amyloid beta-Protein Precursor
Amyloid beta-Peptides