Research Output 1984 2019

2019

Accelerating fireworks algorithm with weight-based guiding sparks

Li, Y., Yu, J., Takagi, H. & Tan, Y., Jan 1 2019, Advances in Swarm Intelligence - 10th International Conference, ICSI 2019, Proceedings. Tan, Y., Shi, Y. & Niu, B. (eds.). Springer Verlag, p. 257-266 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11655 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric sparks
Fitness
Experiment
Guidance
Assign

Actin filaments regulate microtubule growth at the centrosome

Inoue, D., Obino, D., Pineau, J., Farina, F., Gaillard, J., Guerin, C., Blanchoin, L., Lennon-Duménil, A. M. & Théry, M., Jun 3 2019, In : EMBO Journal. 38, 11, e99630.

Research output: Contribution to journalArticle

Actin Cytoskeleton
Microtubules
Centrosome
Actins
Growth

Are microtubules tension sensors?

Hamant, O., Inoue, D., Bouchez, D., Dumais, J. & Mjolsness, E., Dec 1 2019, In : Nature communications. 10, 1, 2360.

Research output: Contribution to journalArticle

Open Access
Mechanical Stress
Microtubules
Developmental Biology
sensors
Sensors

C. elegans collectively forms dynamical networks

Sugi, T., Ito, H., Nishimura, M. & Nagai, K. H., Dec 1 2019, In : Nature communications. 10, 1, 683.

Research output: Contribution to journalArticle

Open Access
Caenorhabditis elegans
Animals
Optogenetics
Animal Behavior
Physics
2 Citations (Scopus)

Competitive Strategies for Differential Evolution

Yu, J., Pei, Y. & Takagi, H., Jan 16 2019, Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018. Institute of Electrical and Electronics Engineers Inc., p. 268-273 6 p. 8616051. (Proceedings - 2018 IEEE International Conference on Systems, Man, and Cybernetics, SMC 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Benchmarking
Population
Pressure
Experiments
Competitive strategy
6 Citations (Scopus)

Continuous dynamic adjustment of the plant circadian oscillator

Webb, A. A. R., Seki, M., Satake, A. & Caldana, C., Dec 1 2019, In : Nature communications. 10, 1, 550.

Research output: Contribution to journalReview article

Physiology
Clocks
adjusting
oscillators
Plastics

Fireworks Algorithm for Multimodal Optimization Using a Distance-based Exclusive Strategy

Yu, J., Takagi, H. & Tan, Y., Jun 1 2019, 2019 IEEE Congress on Evolutionary Computation, CEC 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 2215-2220 6 p. 8790312. (2019 IEEE Congress on Evolutionary Computation, CEC 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multimodal Optimization
Niche
Subgroup
Electric sparks
Explosion
1 Citation (Scopus)

Search acceleration of evolutionary multi-objective optimization using an estimated convergence point

Pei, Y., Yu, J. & Takagi, H., Jan 28 2019, In : Mathematics. 7, 2, 129.

Research output: Contribution to journalArticle

Open Access
Evolutionary multiobjective Optimization
Pareto
Pareto Solutions
Parameter Space
Unimodal Distribution

Three research directions of interactive evolutionary computation

Takagi, H., Jan 1 2019, Proceedings of the 18th Online World Conference on Soft Computing in Industrial Applications, WSC 2018. Cakravastia, A., Ane, B. K. & Diawati, L. (eds.). Springer Verlag, p. 3-5 3 p. (Advances in Intelligent Systems and Computing; vol. 864).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary algorithms
Mathematical operators
Fatigue of materials

Using a Mathematical Model of Phloem Transport to Optimize Strategies for Crop Improvement

Seki, M., Jan 1 2019, Methods in Molecular Biology. Humana Press Inc., p. 387-395 9 p. (Methods in Molecular Biology; vol. 2014).

Research output: Chapter in Book/Report/Conference proceedingChapter

Phloem
Plant Structures
Theoretical Models
Sucrose
Breeding
2018
4 Citations (Scopus)

Accelerating the fireworks algorithm with an estimated convergence point

Yu, J., Takagi, H. & Tan, Y., Jan 1 2018, Advances in Swarm Intelligence - 9th International Conference, ICSI 2018, Proceedings. Tan, Y., Shi, Y. & Tang, Q. (eds.). Springer Verlag, p. 263-272 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10941 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric sparks
Wilcoxon Signed Rank Test
Fitness Landscape
Global Optimum
Weighting

Construction of artificial cilia from microtubules and kinesins through a well-designed bottom-up approach

Sasaki, R., Kabir, A. M. R., Inoue, D., Anan, S., Kimura, A. P., Konagaya, A., Sada, K. & Kakugo, A., Apr 14 2018, In : Nanoscale. 10, 14, p. 6323-6332 10 p.

Research output: Contribution to journalArticle

Kinesin
Hydrolysis
Actuators
Tuning
Adenosine Triphosphate

DegSampler: Collapsed Gibbs sampler for detecting E3 binding sites

Maruyama, O. & Matsuzaki, F., Dec 6 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. 8567448. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Binding sites
Binding Sites
Proteins
Substrates
Probability distributions

DegSampler: Collapsed Gibbs Sampler for Detecting E3 Binding Sites

Maruyama, O. & Matsuzaki, F., Dec 10 2018, p. 1-9. 9 p.

Research output: Contribution to conferencePaper

samplers
binding sites
probability distribution
proteins
ubiquitin-protein ligase

Determining the minimum number of protein-protein interactions required to support known protein complexes

Nakajima, N., Hayashida, M., Jansson, J., Maruyama, O. & Akutsu, T., Apr 2018, In : PloS one. 13, 4, e0195545.

Research output: Contribution to journalArticle

protein-protein interactions
Proteins
proteins
prediction
social networks

Human Awareness Support by Changing Values of Hidden Factors of Input Stimuli Dynamically

Takagi, H., Ikeda, K. & Lai, W. Q., Oct 31 2018, 2018 9th International Conference on Awareness Science and Technology, iCAST 2018. Institute of Electrical and Electronics Engineers Inc., p. 20-25 6 p. 8517174. (2018 9th International Conference on Awareness Science and Technology, iCAST 2018).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

stimulus
Neural networks
Values
Emotions
neural network
1 Citation (Scopus)

Research progress survey on interactive evolutionary computation

Pei, Y. & Takagi, H., May 23 2018, (Accepted/In press) In : Journal of Ambient Intelligence and Humanized Computing. p. 1-14 14 p.

Research output: Contribution to journalArticle

Evolutionary algorithms
Fatigue of materials
Multiobjective optimization
3 Citations (Scopus)

Scouting strategy for biasing fireworks algorithm search to promising directions

Yu, J., Tan, Y. & Takagi, H., Jul 6 2018, GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion. Association for Computing Machinery, Inc, p. 99-100 2 p. (GECCO 2018 Companion - Proceedings of the 2018 Genetic and Evolutionary Computation Conference Companion).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electric sparks
Search Algorithm
Speed of Convergence
Exploitation
Fitness
2017
5 Citations (Scopus)

Acceleration for fireworks algorithm based on amplitude reduction strategy and local optima-based selection strategy

Yu, J. & Takagi, H., Jan 1 2017, Advances in Swarm Intelligence - 8th International Conference, ICSI 2017, Proceedings. Tan, Y., Takagi, H. & Shi, Y. (eds.). Springer Verlag, p. 477-484 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 10385 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Decrease
Strategy
Fitness
Experiments
Benchmark
13 Citations (Scopus)

Adjustment of the Arabidopsis circadian oscillator by sugar signalling dictates the regulation of starch metabolism

Seki, M., Ohara, T., Hearn, T. J., Frank, A., Da Silva, V. C. H., Caldana, C., Webb, A. A. R. & Satake, A., Dec 1 2017, In : Scientific reports. 7, 1, 8305.

Research output: Contribution to journalArticle

Arabidopsis
starch
sugars
metabolism
sucrose
2 Citations (Scopus)

Administration of gonadotropin-releasing hormone agonist on day 5 increases luteal blood flow and improves pregnancy prediction accuracy on day 14 in recipient holstein cows

Kanazawa, T., Seki, M., Ishiyama, K., Araseki, M., Izaike, Y. & Takahashi, T., Jan 1 2017, In : Journal of Reproduction and Development. 63, 4, p. 389-399 11 p.

Research output: Contribution to journalArticle

hormone agonists
gonadotropin-releasing hormone
corpus luteum
blood flow
Holstein
1 Citation (Scopus)

Estimation of the convergence points of a population using an individual pool

Yu, J. & Takagi, H., Dec 13 2017, 2017 IEEE 10th International Workshop on Computational Intelligence and Applications, IWCIA 2017 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 67-72 6 p. (2017 IEEE 10th International Workshop on Computational Intelligence and Applications, IWCIA 2017 - Proceedings; vol. 2017-December).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary algorithms
Costs
Convergence Speed
Evolutionary Computation
Differential Evolution
3 Citations (Scopus)

Evolving fuzzy logic rule-based game player model for game development

Vorachart, V. & Takagi, H., Dec 1 2017, In : International Journal of Innovative Computing, Information and Control. 13, 6, p. 1941-1951 11 p.

Research output: Contribution to journalArticle

Fuzzy Logic
Fuzzy logic
Game
Fuzzy Logic System
Model
8 Citations (Scopus)

Low temperature nullifies the circadian clock in cyanobacteria through Hopf bifurcation

Murayama, Y., Kori, H., Oshima, C., Kondo, T., Iwasaki, H. & Ito, H., May 30 2017, In : Proceedings of the National Academy of Sciences of the United States of America. 114, 22, p. 5641-5646 6 p.

Research output: Contribution to journalArticle

Circadian Clocks
Cyanobacteria
Temperature
Circadian Rhythm
Phosphorylation

Motility of Microtubules on the Inner Surface of Water-in-Oil Emulsion Droplets

Tsuji, M., Rashedul Kabir, A. M., Ito, M., Inoue, D., Kokado, K., Sada, K. & Kakugo, A., Oct 31 2017, In : Langmuir. 33, 43, p. 12108-12113 6 p.

Research output: Contribution to journalArticle

locomotion
Emulsions
emulsions
Oils
oils

Preface

Tan, Y., Takagi, H. & Shi, Y., Jan 1 2017, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10387 LNCS, p. V-VI

Research output: Contribution to journalEditorial

Preface

Tan, Y., Takagi, H. & Shi, Y., Jan 1 2017, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10385 LNCS, p. V-VI

Research output: Contribution to journalEditorial

Preface

Tan, Y., Takagi, H., Shi, Y. & Niu, B., Jan 1 2017, In : Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics). 10386 LNCS, p. V-VI

Research output: Contribution to journalEditorial

Understanding the emergence of collective motion of microtubules driven by kinesins: role of concentration of microtubules and depletion force

Saito, A., Farhana, T. I., Kabir, A. M. R., Inoue, D., Konagaya, A., Sada, K. & Kakugo, A., Jan 1 2017, In : RSC Advances. 7, 22, p. 13191-13197 7 p.

Research output: Contribution to journalArticle

Open Access
Kinesin
Kinetics
2016
4 Citations (Scopus)

Accelerating evolutionary computation using estimated convergence points

Yu, J., Pei, Y. & Takagi, H., Nov 14 2016, 2016 IEEE Congress on Evolutionary Computation, CEC 2016. Institute of Electrical and Electronics Engineers Inc., p. 1438-1444 7 p. 7743959. (2016 IEEE Congress on Evolutionary Computation, CEC 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary Computation
Evolutionary algorithms
Costs
Differential Evolution
Accelerate

Achieving sustainable cooperation in generalized prisoner's dilemma with observation errors

Shigenaka, F., Yamamoto, S., Seki, M., Sekiguchi, T., Iwasaki, A. & Yokoo, M., Jan 1 2016, AAMAS 2016 - Proceedings of the 2016 International Conference on Autonomous Agents and Multiagent Systems. International Foundation for Autonomous Agents and Multiagent Systems (IFAAMAS), p. 1323-1324 2 p. (Proceedings of the International Joint Conference on Autonomous Agents and Multiagent Systems, AAMAS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Monitoring
8 Citations (Scopus)
Altruism
Gossip
altruism
Model
Game
3 Citations (Scopus)

Clustering of moving vectors for evolutionary computation

Yu, J. & Takagi, H., Jun 15 2016, Proceedings of the 2015 7th International Conference of Soft Computing and Pattern Recognition, SoCPaR 2015. Koppen, M., Muda, A. K., Ma, K., Xue, B., Takagi, H. & Abraham, A. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 169-174 6 p. 7492802. (Proceedings of the 2015 7th International Conference of Soft Computing and Pattern Recognition, SoCPaR 2015).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary Computation
Evolutionary algorithms
Clustering
Global Optimum
Clustering Methods

Construction and Gilding of Metal-Organic Frameworks and Microtubule Conjugates

Ito, M., Ishiwata, T., Anan, S., Kokado, K., Inoue, D., Kabir, A. M. R., Kakugo, A. & Sada, K., Jan 1 2016, In : ChemistrySelect. 1, 16, p. 5358-5362 5 p.

Research output: Contribution to journalArticle

Kinesin
Metals
Adenosine
Phosphates
Microporous materials
10 Citations (Scopus)

Effect of Multiple Clock Gene Ablations on the Circadian Period Length and Temperature Compensation in Mammalian Cells

Tsuchiya, Y., Umemura, Y., Minami, Y., Koike, N., Hosokawa, T., Hara, M., Ito, H., Inokawa, H. & Yagita, K., Feb 1 2016, In : Journal of Biological Rhythms. 31, 1, p. 48-56 9 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Circadian Clocks
Temperature
Embryonic Stem Cells
Circadian Rhythm

Enhanced dynamic instability of microtubules in a ROS free inert environment

Islam, M. S., Kabir, A. M. R., Inoue, D., Sada, K. & Kakugo, A., Apr 2016, In : Biophysical Chemistry. 211, p. 1-8 8 p.

Research output: Contribution to journalArticle

Microtubules
Reactive Oxygen Species
Biological Phenomena
Growth
In Vitro Techniques
2 Citations (Scopus)

Florigen distribution determined by a source-sink balance explains the diversity of inflorescence structures in Arabidopsis

Satake, A., Seki, M., Iima, M., Teramoto, T. & Nishiura, Y., Apr 21 2016, In : Journal of Theoretical Biology. 395, p. 227-237 11 p.

Research output: Contribution to journalArticle

Florigen
florigen
Arabidopsis
Inflorescence
Sugar (sucrose)

Investigation of the microtubule dynamics with probabilistic data association filter

Mahemuti, B., Inoue, D., Kakugo, A. & Konagaya, A., Nov 28 2016, 2016 IEEE 11th Annual International Conference on Nano/Micro Engineered and Molecular Systems, NEMS 2016. Institute of Electrical and Electronics Engineers Inc., p. 101-106 6 p. 7758209. (2016 IEEE 11th Annual International Conference on Nano/Micro Engineered and Molecular Systems, NEMS 2016).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Association reactions
Assays
plant breeding
ecophysiology
crop plant
phloem
hypothesis testing
12 Citations (Scopus)

Pregnancy prediction on the day of embryo transfer (Day 7) and Day 14 by measuring luteal blood flow in dairy cows

Kanazawa, T., Seki, M., Ishiyama, K., Kubo, T., Kaneda, Y., Sakaguchi, M., Izaike, Y. & Takahashi, T., Feb 28 2016, In : Theriogenology. 86, 6, p. 1436-1444 9 p.

Research output: Contribution to journalArticle

Embryo Transfer
Corpus Luteum
embryo transfer
corpus luteum
blood flow

Visualizing similarity of appearance by arrangement of cards

Nakatsuji, N., Ihara, H., Seno, T. & Ito, H., Jan 1 2016, In : Frontiers in Psychology. 7, MAY, 698.

Research output: Contribution to journalArticle

Psychology
Posters
2015
8 Citations (Scopus)

Analytical estimation of the convergence point of populations

Murata, N., Nishii, R., Takagi, H. & Pei, Y., Sep 10 2015, 2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 2619-2624 6 p. 7257211. (2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary algorithms
Fitness Landscape
Evolutionary Computation
Experimental Evaluation
Fitness

Buckling of Microtubules on a 2D Elastic Medium

Kabir, A. M. R., Inoue, D., Afrin, T., Mayama, H., Sada, K. & Kakugo, A., Nov 24 2015, In : Scientific reports. 5, 17222.

Research output: Contribution to journalArticle

Open Access
Microtubules
Microtubule-Associated Proteins
Kinesin
Mechanical Stress

Discrete and ultradiscrete models for biological rhythms comprising a simple negative feedback loop

Gibo, S. & Ito, H., Aug 7 2015, In : Journal of Theoretical Biology. 378, p. 89-95 7 p.

Research output: Contribution to journalArticle

biological rhythms
Negative Feedback
Feedback Loop
Periodicity
Feedback
5 Citations (Scopus)

Effectiveness of approximation strategy in surrogate-assisted fireworks algorithm

Pei, Y., Zheng, S., Tan, Y. & Takagi, H., Oct 21 2015, In : International Journal of Machine Learning and Cybernetics. 6, 5, p. 795-810 16 p.

Research output: Contribution to journalArticle

Sampling
Interpolation
Least squares approximations
Statistical tests
Extrapolation

Effect of length and rigidity of microtubules on the size of ring-shaped assemblies obtained through active self-organization

Wada, S., Rashedul Kabir, A. M., Ito, M., Inoue, D., Sada, K. & Kakugo, A., Feb 14 2015, In : Soft Matter. 11, 6, p. 1151-1157 7 p.

Research output: Contribution to journalArticle

rigidity
Rigidity
assemblies
filaments
rings

Intelligence of reconstructed biomolecular motor system

Inoue, D., Kabir, A. M. R. & Kakugo, A., Jan 1 2015, In : EAI International Conference on Bio-inspired Information and Communications Technologies (BICT).

Research output: Contribution to journalConference article

Open Access
Intelligence
Elastomers
Microtubules
Assays
Substrates
5 Citations (Scopus)

Interactive evolutionary computation for analyzing human characteristics

Takagi, H., Jan 1 2015, In : Advances in Intelligent Systems and Computing. 316, p. 189-195 7 p.

Research output: Contribution to journalArticle

Evolutionary algorithms
Cochlear implants
Hearing aids
3 Citations (Scopus)

Local information of fitness landscape obtained by paired comparison-based memetic search for interactive differential evolution

Pei, Y. & Takagi, H., Sep 10 2015, 2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 2215-2221 7 p. 7257158. (2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Paired Comparisons
Fitness Landscape
Differential Evolution
Differential Evolution Algorithm
Target