Research Output 1977 2019

Filter
Article
2019
Open Access
glutathione dehydrogenase (ascorbate)
Nilaparvata lugens
Glutathione Reductase
Glutathione Transferase
glutathione transferase

A preliminary metagenome analysis based on a combination of protein domains

Igarashi, Y., Mori, D., Mitsuyama, S., Yoshitake, K., Ono, H., Watanabe, T., Taniuchi, Y., Sakami, T., Kuwata, A., Kobayashi, T., Ishino, Y., Watabe, S., Gojobori, T. & Asakawa, S., Jun 1 2019, In : Proteomes. 7, 2, 19.

Research output: Contribution to journalArticle

Open Access
Metagenome
Metagenomics
Genes
Firearms
Chemical analysis
Open Access
Lysophospholipids
Phospholipases
Lipase
Triglycerides
Fatty Acids

Biofertilizer production for agronomic application and evaluation of its symbiotic effectiveness in soybeans

Htwe, A. Z., Moh, S. M., Moe, K. & Yamakawa, T., Mar 27 2019, In : Agronomy. 9, 4, 162.

Research output: Contribution to journalArticle

Open Access
biofertilizers
soybeans
nitrogen fixation
nodulation
seed yield

Biogas Power Generation with SOFC to Demonstrate Energy Circulation Suitable for Mekong Delta, Vietnam

Shiratori, Y., Sakamoto, M., Nguyen, T. G. H., Yamakawa, T., Kitaoka, T., Orishima, H., Matsubara, H., Watanabe, Y., Nakatsuka, S., Doan, T. C. D. & Dang, C. M., Jan 1 2019, In : Fuel Cells. 19, 4, p. 346-353 8 p.

Research output: Contribution to journalArticle

Biogas
Solid oxide fuel cells (SOFC)
Power generation
Bagasse
Ponds

Catechol O-methyltransferase homologs in Schizosaccharomyces pombe are response factors to alkaline and salt stress

Tominaga, A., Higuchi, Y., Mori, H., Akai, M., Suyama, A., Yamada, N. & Takegawa, K., Jun 18 2019, In : Applied Microbiology and Biotechnology. 103, 12, p. 4881-4887 7 p.

Research output: Contribution to journalArticle

Catechol O-Methyltransferase
Schizosaccharomyces
Salts
Microarray Analysis
Oligonucleotide Array Sequence Analysis
3 Citations (Scopus)

Comprehensive Prediction of Target RNA Editing Sites for PLS-Class PPR Proteins in Arabidopsis thaliana

Kobayashi, T., Yagi, Y. & Nakamura, T., Apr 1 2019, In : Plant and Cell Physiology. 60, 4, p. 862-874 13 p.

Research output: Contribution to journalArticle

RNA Editing
RNA editing
Arabidopsis
Arabidopsis thaliana
prediction

Contribution of root hair development to sulfate uptake in arabidopsis

Kimura, Y., Ushiwatari, T., Suyama, A., Tominaga-Wada, R., Wada, T. & Maruyama-Nakashita, A., Apr 2019, In : Plants. 8, 4, 106.

Research output: Contribution to journalArticle

Open Access
root hairs
hair
sulfates
Arabidopsis
sulfate

Crystal structure and biochemical characterization of CJP38, a β-1,3-glucanase and allergen of Cryptomeria japonica pollen

Takashima, T., Taku, T., Yamanaka, T., Fukamizo, T., Numata, T. & Ohnuma, T., Dec 2019, In : Molecular Immunology. 116, p. 199-207 9 p.

Research output: Contribution to journalArticle

Cryptomeria
Latex
Pollen
Allergens
Hevea

Development of cytoplasmic male sterile lines and restorer lines of various elite Indica Group rice cultivars using CW-CMS/Rf17 system

Toriyama, K., Kazama, T., Sato, T., Fukuta, Y. & Oka, M., Dec 1 2019, In : Rice. 12, 1, 73.

Research output: Contribution to journalArticle

Open Access
restorer lines
cultivar
rice
cultivars
fertility
1 Citation (Scopus)
Open Access
proline
Oryza sativa
water stress
starch
sugars
2 Citations (Scopus)
Open Access
Streptomyces griseoflavus
Bradyrhizobium
biofertilizers
mung beans
nodulation

Effects of Integrated Organic and Inorganic Fertilizers on Yield and Growth Parameters of Rice Varieties

Moe, K., Moh, S. M., Htwe, A. Z., Kajihara, Y. & Yamakawa, T., Sep 1 2019, In : Rice Science. 26, 5, p. 309-318 10 p.

Research output: Contribution to journalArticle

Open Access
Fertilizers
organic fertilizers
mineral fertilizers
fertilizers
rice
1 Citation (Scopus)

Effects on NPK status, growth, dry matter and yield of rice (Oryza sativa) by organic fertilizers applied in field condition

Moe, K., Htwe, A. Z., Thu, T. T. P., Kajihara, Y. & Yamakawa, T., May 1 2019, In : Agriculture (Switzerland). 9, 5, 109.

Research output: Contribution to journalArticle

Open Access
Fertilizers
organic fertilizers
Oryza sativa
fertilizers
rice
3 Citations (Scopus)

Elucidating functions of DP1 and DP2 subunits from the Thermococcus kodakarensis family D DNA polymerase

Takashima, N., Ishino, S., Oki, K., Takafuji, M., Yamagami, T., Matsuo, R., Mayanagi, K. & Ishino, Y., Jan 22 2019, In : Extremophiles. 23, 1, p. 161-172 12 p.

Research output: Contribution to journalArticle

Thermococcus
Transcription Factor DP1
Archaea
DNA-Directed DNA Polymerase
DNA
1 Citation (Scopus)

Expression, purification, and characterization of highly active endo-α-N-acetylgalactosaminidases expressed by silkworm-baculovirus expression system

Morio, A., Xu, J., Masuda, A., Kinoshita, Y., Hino, M., Morokuma, D., Goda, H. M., Okino, N., Ito, M., Mon, H., Fujita, R., Kusakabe, T. & Lee, J. M., Jun 1 2019, In : Journal of Asia-Pacific Entomology. 22, 2, p. 404-408 5 p.

Research output: Contribution to journalArticle

glycosidases
Enterococcus faecalis
Baculoviridae
silkworms
glycoproteins
Open Access
Delphacidae
Nilaparvata lugens
glutathione transferase
Hemiptera
insecticides
2 Citations (Scopus)

Generation of virus-specific CD8 + T cells by vaccination with inactivated virus in the intestine of ginbuna crucian carp

Tajimi, S., Kondo, M., Nakanishi, T., Nagasawa, T., Nakao, M. & Somamoto, T., Apr 1 2019, In : Developmental and Comparative Immunology. 93, p. 37-44 8 p.

Research output: Contribution to journalArticle

Carps
Intestines
Vaccination
Viruses
T-Lymphocytes

Glucosinolate distribution in the aerial parts of sel1-10, a disruption mutant of the sulfate transporter SULTR1;2, in mature arabidopsis thaliana plants

Morikawa-Ichinose, T., Kim, S. J., Allahham, A., Kawaguchi, R. & Maruyama-Nakashita, A., Apr 2019, In : Plants. 8, 4, 95.

Research output: Contribution to journalArticle

Open Access
glucosinolates
aerial parts
transporters
sulfates
Arabidopsis thaliana

Guard cell photosynthesis is crucial in abscisic acid-induced stomatal closure

Iwai, S., Ogata, S., Yamada, N., Onjo, M., Sonoike, K. & Shimazaki, K. I., May 2019, In : Plant Direct. 3, 5, e00137.

Research output: Contribution to journalArticle

Open Access
Abscisic Acid
abscisic acid
Photosynthesis
guard cells
reactive oxygen species

Ligand-Induced Conformational Changes near the Active Site Regulating Enzyme Activity of Momorcharins from Seeds of Bitter Gourd

Matsunaga, C., Okada, Y. & Nishimoto, E., Jan 15 2019, In : Journal of Fluorescence. 29, 1, p. 231-240 10 p.

Research output: Contribution to journalArticle

Momordica charantia
Enzyme activity
Seed
Catalytic Domain
Seeds
3 Citations (Scopus)

New archaeal viruses discovered by metagenomic analysis of viral communities in enrichment cultures

Liu, Y., Brandt, D., Ishino, S., Ishino, Y., Koonin, E. V., Kalinowski, J., Krupovic, M. & Prangishvili, D., Jun 1 2019, In : Environmental Microbiology. 21, 6, p. 2002-2014 13 p.

Research output: Contribution to journalArticle

Archaeal Viruses
Metagenomics
enrichment culture
virus
Viruses
Brassica rapa subsp. nipposinica var. perviridis
Brassica rapa
Manure
Nitrates
animal manures
1 Citation (Scopus)

Pol B, a family B DNA polymerase, in Thermococcus kodakarensis is important for DNA repair, but not DNA replication

Kushida, T., Narumi, I., Ishino, S., Ishino, Y., Fujiwara, S., Imanaka, T. & Higashibata, H., Jan 1 2019, In : Microbes and Environments. 34, 3, p. 316-326 11 p.

Research output: Contribution to journalArticle

Open Access
Thermococcus kodakarensis
DNA-directed DNA polymerase
DNA replication
DNA repair
repair
Thermococcus
Replication Protein A
DNA-Directed DNA Polymerase
Single-Stranded DNA
DNA

Searching for Myanmar indigenous Bradyrhizobium type C strains that best identify Rj4 genotypes in soybean

Htwe, A. Z., Taira, K. & Yamakawa, T., May 4 2019, In : Soil Science and Plant Nutrition. 65, 3, p. 228-233 6 p.

Research output: Contribution to journalArticle

Bradyrhizobium
Myanmar
soybean
genotype
soybeans

Specific monovalent cation effect on protein-protein interactions revealed by protein rotational diffusion analysis

Kato, A., Katsuki, Y. & Nishimoto, E., Sep 1 2019, In : Chemical Physics Letters. 730, p. 89-94 6 p.

Research output: Contribution to journalArticle

Monovalent Cations
lysozyme
Muramidase
proteins
cations

Switch of the interactions between the ribosomal stalk and EF1A in the GTP- and GDP-bound conformations

Maruyama, K., Imai, H., Kawamura, M., Ishino, S., Ishino, Y., Ito, K. & Uchiumi, T., Dec 1 2019, In : Scientific reports. 9, 1, 14761.

Research output: Contribution to journalArticle

Open Access
Guanosine Triphosphate
Ribosomes
Large Ribosome Subunits
Peptide Elongation Factors
Ribosomal Proteins

Temperature effects on the yield and quality of the medicinal plant Pinellia ternata Breit

Eguchi, T., Tanaka, H., Yoshida, S. & Matsuoka, K., Jan 1 2019, In : Environmental Control in Biology. 57, 3, p. 83-85 3 p.

Research output: Contribution to journalArticle

Open Access
Pinellia ternata
medicinal plants
ingredients
summer
Japan
2 Citations (Scopus)

The glycerol-3-phosphate acyltransferase PLAT2 functions in the generation of DHA-rich glycerolipids in Aurantiochytrium limacinum F26-b

Nutahara, E., Abe, E., Uno, S., Ishibashi, Y., Watanabe, T., Hayashi, M., Okino, N. & Ito, M., Jan 2019, In : PloS one. 14, 1, e0211164.

Research output: Contribution to journalArticle

glycerol-3-phosphate acyltransferase
Acyltransferases
Triglycerides
triacylglycerols
Phosphatidylcholines
2018
7 Citations (Scopus)

Activation of the mismatch-specific endonuclease EndoMS/NucS by the replication clamp is required for high fidelity DNA replication

Ishino, S., Skouloubris, S., Kudo, H., L'Hermitte-Stead, C., Es-Sadik, A., Lambry, J. C., Ishino, Y. & Myllykallio, H., Jul 6 2018, In : Nucleic acids research. 46, 12, p. 6206-6217 12 p.

Research output: Contribution to journalArticle

DNA Mismatch Repair
Endonucleases
DNA Replication
Corynebacterium glutamicum
Thermococcales

Characterisation of a diazinon-metabolising glutathione S-transferase in the silkworm Bombyx mori by X-ray crystallography and genome editing analysis

Yamamoto, K., Higashiura, A., Hirowatari, A., Yamada, N., Tsubota, T., Sezutsu, H. & Nakagawa, A., Dec 1 2018, In : Scientific reports. 8, 1, 16835.

Research output: Contribution to journalArticle

Diazinon
Bombyx
X Ray Crystallography
Insecticides
Glutathione Transferase
1 Citation (Scopus)

Crystal structure of the novel lesion-specific endonuclease PfuEndoQ from Pyrococcus furiosus

Miyazono, K. I., Ishino, S., Makita, N., Ito, T., Ishino, Y. & Tanokura, M., May 2018, In : Nucleic acids research. 46, 9, p. 4807-4818 12 p.

Research output: Contribution to journalArticle

Open Access
Pyrococcus furiosus
Endonucleases
DNA Repair
Thermococcales
DNA Cleavage
3 Citations (Scopus)

Crystal structures of the archaeal RNase P protein Rpp38 in complex with RNA fragments containing a K-turn motif

Oshima, K., Gao, X., Hayashi, S., Ueda, T., Nakashima, T. & Kimura, M., Jan 2018, In : Acta Crystallographica Section F: Structural Biology Communications. 74, 1, p. 57-64 8 p.

Research output: Contribution to journalArticle

Ribonuclease P
Crystal structure
fragments
RNA
proteins

Development of anti-atypical aeromonas salmonicida monoclonal antibodies for diagnosis of “new ulcer disease⇝ in koi carp

Somamoto, T., Maruyama, S., Nagasawa, T., Nakao, M., Sato, A., Hatta, H., Sato, M., Murakami-Yamaguchi, Y., Kizu-Mori, K., Hirakawa, Y. & Narita, H., Jan 1 2018, In : Fish Pathology. 53, 1, p. 36-39 4 p.

Research output: Contribution to journalArticle

koi
Aeromonas salmonicida
carp
antibody
monoclonal antibodies
1 Citation (Scopus)

Direct visualization of DNA baton pass between replication factors bound to PCNA

Mayanagi, K., Ishino, S., Shirai, T., Oyama, T., Kiyonari, S., Kohda, D., Morikawa, K. & Ishino, Y., Dec 1 2018, In : Scientific reports. 8, 1, 16209.

Research output: Contribution to journalArticle

Proliferating Cell Nuclear Antigen
Flap Endonucleases
DNA Ligases
DNA
Archaea
1 Citation (Scopus)
Sphingobacterium
Acetylglucosaminidase
Fucose
Oligosaccharides
Genome
2 Citations (Scopus)

Effects of co-inoculation of Bradyrhizobium elkanii BLY3-8 and Streptomyces griseoflavus P4 on Rj4 soybean varieties

Htwe, A. Z., Moh, S. M., Moe, K. & Yamakawa, T., Jul 4 2018, In : Soil Science and Plant Nutrition. 64, 4, p. 449-454 6 p.

Research output: Contribution to journalArticle

Streptomyces griseoflavus
Bradyrhizobium elkanii
nodulation
inoculation
soybean
5 Citations (Scopus)
Streptomyces griseoflavus
Bradyrhizobium japonicum
nodulation
nutrient uptake
nitrogen fixation
1 Citation (Scopus)
soil chemical properties
application methods
animal manures
chemical property
manure
1 Citation (Scopus)

Effects of water temperature and light intensity on the acute toxicity of herbicide thiobencarb to a green alga, Raphidocelis subcapitata

Tasmin, R., Shimasaki, Y., Tsuyama, M., Qiu, X., Khalil, F., Mukai, K., Khanam, M. R. M., Yamada, N., Fukuda, S., Kang, I. J. & Oshima, Y., Sep 1 2018, In : Environmental Science and Pollution Research. 25, 25, p. 25363-25370 8 p.

Research output: Contribution to journalArticle

Chlorophyta
Herbicides
Algae
green alga
light intensity
25 Citations (Scopus)

Evaluation of probiotic Bacillus aerius B81e isolated from healthy hybrid catfish on growth, disease resistance and innate immunity of Pla-mong Pangasius bocourti

Meidong, R., Khotchanalekha, K., Doolgindachbaporn, S., Nagasawa, T., Nakao, M., Sakai, K. & Tongpim, S., Feb 2018, In : Fish and Shellfish Immunology. 73, p. 1-10 10 p.

Research output: Contribution to journalArticle

Pangasius bocourti
probiotics
disease resistance
Bacillus (bacteria)
Bacilli
18 Citations (Scopus)

History of CRISPR-Cas from encounter with a mysterious repeated sequence to genome editing technology

Ishino, Y., Krupovic, M. & Forterre, P., Apr 1 2018, In : Journal of bacteriology. 200, 7, e00580-17.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Technology
Archaea
CRISPR-Associated Proteins
Interspersed Repetitive Sequences
4 Citations (Scopus)

Lactosylceramide synthases encoded by B4galt5 and 6 genes are pivotal for neuronal generation and myelin formation in mice

Yoshihara, T., Satake, H., Nishie, T., Okino, N., Hatta, T., Otani, H., Naruse, C., Suzuki, H., Sugihara, K., Kamimura, E., Tokuda, N., Furukawa, K., Fururkawa, K., Ito, M. & Asano, M., Aug 2018, In : PLoS genetics. 14, 8, e1007545.

Research output: Contribution to journalArticle

myelin sheath
nervous system
Myelin Sheath
brain
gene
27 Citations (Scopus)

Metabolic and chemical regulation of tRNA modification associated with taurine deficiency and human disease

Asano, K., Suzuki, T., Saito, A., Wei, F. Y., Ikeuchi, Y., Numata, T., Tanaka, R., Yamane, Y., Yamamoto, T., Goto, T., Kishita, Y., Murayama, K., Ohtake, A., Okazaki, Y., Tomizawa, K., Sakaguchi, Y. & Suzuki, T., Feb 28 2018, In : Nucleic acids research. 46, 4, p. 1565-1583 19 p.

Research output: Contribution to journalArticle

Open Access
Deficiency Diseases
Taurine
Transfer RNA
Flatfishes
Anticodon
2 Citations (Scopus)

Regulation of glucosylceramide synthesis by Golgi-localized phosphoinositide

Ishibashi, Y., Ito, M. & Hirabayashi, Y., May 23 2018, In : Biochemical and Biophysical Research Communications. 499, 4, p. 1011-1018 8 p.

Research output: Contribution to journalArticle

Glucosylceramides
Phosphatidylinositols
Phosphates
Uridine Diphosphate Glucose
Golgi Apparatus
nodulation
soybean
genotype
soybeans
nitrogen fixation
11 Citations (Scopus)

Targeted knock-in of an scFv-Fc antibody gene into the hprt locus of Chinese hamster ovary cells using CRISPR/Cas9 and CRIS-PITCh systems

Yoshinori, K., Komatsu, S., Komatsu, S., Murakami, M., Ito, A., Sakuma, T., Nakamura, T., Yamamoto, T. & Kamihira, M., May 1 2018, In : Journal of Bioscience and Bioengineering. 125, 5, p. 599-605 7 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
Single-Chain Antibodies
Chromosomes
Cricetulus
Antibodies

The mesophilic archaeon Methanosarcina acetivorans counteracts uracil in DNA with multiple enzymes: EndoQ, ExoIII, and UDG

Shiraishi, M., Ishino, S., Heffernan, M., Cann, I. & Ishino, Y., Dec 1 2018, In : Scientific reports. 8, 1, 15791.

Research output: Contribution to journalArticle

Methanosarcina
Uracil-DNA Glycosidase
Uracil
Endonucleases
Archaea

Two family B DNA polymerases from Aeropyrum pernix, based on revised translational frames

Daimon, K., Ishino, S., Imai, N., Nagumo, S., Yamagami, T., Matsukawa, H. & Ishino, Y., Apr 16 2018, In : Frontiers in Molecular Biosciences. 5, APR, 37.

Research output: Contribution to journalArticle

Aeropyrum
DNA-Directed DNA Polymerase
DNA Replication
Enzymes
Crenarchaeota