Research Output 1977 2019

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Review article
2018

Molecular mechanism for Pseudomottas ceramidase expression through sphingosine-specific transcriptional regulator and its biological roles

Okino, N. & Ito, M., Jan 1 2018, In : Seikagaku. 90, 2, p. 178-182 5 p.

Research output: Contribution to journalReview article

Ceramidases
Sphingosine
2017
9 Citations (Scopus)

Metabolic changes sustain the plant life in low-sulfur environments

Maruyama, A., Oct 1 2017, In : Current Opinion in Plant Biology. 39, p. 144-151 8 p.

Research output: Contribution to journalReview article

sulfur
metabolism
regulatory proteins
glucosinolates
assimilation (physiology)
2015
25 Citations (Scopus)

DNA repair in hyperthermophilic and hyperradioresistant microorganisms

Ishino, Y. & Narumi, I., Jun 1 2015, In : Current Opinion in Microbiology. 25, p. 103-112 10 p.

Research output: Contribution to journalReview article

DNA Repair
Genome
Deamination
Genomic Instability
DNA
3 Citations (Scopus)

From Structure-Function Analyses to Protein Engineering for Practical Applications of DNA Ligase

Tanabe, M., Ishino, Y. & Nishida, H., Jan 1 2015, In : Archaea. 2015, 267570.

Research output: Contribution to journalReview article

protein engineering
DNA Ligases
Protein Engineering
ligases
DNA

Physiological significance of glycolipid catabolism in cryptococcus neoformans

Watanabe, T., Ishibashi, Y. & Ito, M., Sep 29 2015, In : Trends in Glycoscience and Glycotechnology. 27, 157, p. J21-J31

Research output: Contribution to journalReview article

Glucosylceramides
Cryptococcus neoformans
Glycolipids
endoglycoceramidase
Glucosides
1 Citation (Scopus)

Physiological significance of glycolipid catabolism in Cryptococcus neoformans

Watanabe, T., Ishibashi, Y. & Ito, M., Sep 29 2015, In : Trends in Glycoscience and Glycotechnology. 27, 157, p. E21-E31

Research output: Contribution to journalReview article

Glucosylceramides
Cryptococcus neoformans
Glycolipids
endoglycoceramidase
Glucosides
2014
84 Citations (Scopus)

Acyltransferases and transacylases that determine the fatty acid composition of glycerolipids and the metabolism of bioactive lipid mediators in mammalian cells and model organisms

Yamashita, A., Hayashi, Y., Nemoto-Sasaki, Y., Ito, M., Oka, S., Tanikawa, T., Waku, K. & Sugiura, T., Jan 1 2014, In : Progress in Lipid Research. 53, 1, p. 18-81 64 p.

Research output: Contribution to journalReview article

Acyltransferases
Coenzyme A
Lipid Metabolism
Metabolism
Phospholipids
27 Citations (Scopus)

Antiviral functions of CD8+ cytotoxic T cells in teleost fish

Somamoto, T., Koppang, E. O. & Fischer, U., Apr 1 2014, In : Developmental and Comparative Immunology. 43, 2, p. 197-204 8 p.

Research output: Contribution to journalReview article

Antiviral Agents
Fishes
T-Lymphocytes
Immunity
Vaccination
32 Citations (Scopus)

A short history of research on immunity to infectious diseases in fish

Van Muiswinkel, W. B. & Nakao, M., Apr 1 2014, In : Developmental and Comparative Immunology. 43, 2, p. 130-150 21 p.

Research output: Contribution to journalReview article

Fish Diseases
Communicable Diseases
Immune System
Immunity
Fishes
26 Citations (Scopus)
DNA-Directed DNA Polymerase
Biotechnology
History
Research
Enzymes
17 Citations (Scopus)
Neutral Ceramidase
Ceramides
Enzymes
Vertebrates
Zinc
2013
44 Citations (Scopus)

New insights on glucosylated lipids: Metabolism and functions

Ishibashi, Y., Kohyama-Koganeya, A. & Hirabayashi, Y., Jan 1 2013, In : Biochimica et Biophysica Acta - Molecular and Cell Biology of Lipids. 1831, 9, p. 1475-1485 11 p.

Research output: Contribution to journalReview article

Lipid Metabolism
Ceramides
Lipids
Glucosylceramides
Phosphatidic Acids
44 Citations (Scopus)

Pentatricopeptide repeat proteins involved in plant organellar RNA editing

Yagi, Y., Tachikawa, M., Noguchi, H., Satoh, S., Obokata, J. & Nakamura, T., Sep 2013, In : RNA biology. 10, 9, p. 1236-1242 7 p.

Research output: Contribution to journalReview article

Plant RNA
RNA Editing
RNA
Proteins
Chloroplast RNA
2012
22 Citations (Scopus)

Guideline for hereditary angioedema (HAE) 2010 by the Japanese Association for Complement Research - Secondary publication

Horiuchi, T., Ohi, H., Ohsawa, I., Fujita, T., Matsushita, M., Okada, N., Seya, T., Yamamoto, T., Endo, Y., Hatanaka, M., Wakamiya, N., Mizuno, M., Nakao, M., Okada, H., Tsukamoto, H., Matsumoto, M., Inoue, N., Nonaka, M. & Kinoshita, T., Jan 1 2012, In : Allergology International. 61, 4, p. 559-562 4 p.

Research output: Contribution to journalReview article

Hereditary Angioedemas
Publications
Guidelines
Research
Japan
55 Citations (Scopus)

Mechanistic insight into pentatricopeptide repeat proteins as sequence-specific RNA-binding proteins for organellar RNAs in plants

Nakamura, T., Yagi, Y. & Kobayashi, K., Jul 1 2012, In : Plant and Cell Physiology. 53, 7, p. 1171-1179 9 p.

Research output: Contribution to journalReview article

Plant RNA
RNA-binding proteins
RNA-Binding Proteins
RNA
Proteins
27 Citations (Scopus)

Rapid progress of DNA replication studies in Archaea, the third domain of life

Ishino, Y. & Ishino, S., May 1 2012, In : Science China Life Sciences. 55, 5, p. 386-403 18 p.

Research output: Contribution to journalReview article

information processing
Archaea
DNA replication
DNA Replication
Archaeal DNA
2011
83 Citations (Scopus)

The complement system in teleost fish: Progress of post-homolog-hunting researches

Nakao, M., Tsujikura, M., Ichiki, S., Vo, T. K. & Somamoto, T., Dec 1 2011, In : Developmental and Comparative Immunology. 35, 12, p. 1296-1308 13 p.

Research output: Contribution to journalReview article

Fishes
Complement Receptors
Acute-Phase Reaction
Research
Sequence Analysis
2010
29 Citations (Scopus)

Zebrafish as a model for the study of the phase II cytosolic sulfotransferases

Liu, T. A., Bhuiyan, S., Liu, M. Y., Sugahara, T., Sakakibara, Y., Suiko, M., Yasuda, S., Kakuta, Y., Kimura, M., Williams, F. E. & Liu, M. C., Jul 1 2010, In : Current Drug Metabolism. 11, 6, p. 538-546 9 p.

Research output: Contribution to journalReview article

Sulfotransferases
Zebrafish
Detoxification
Pharmaceutical Preparations
Xenobiotics
2009

DNA transactions in Archaea

Ishino, S. & Ishino, Y., Feb 2009, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 54, 2, p. 141-147 7 p.

Research output: Contribution to journalReview article

Archaeal Genome
Archaeal Proteins
Origin Recognition Complex
Cruciform DNA
Archaea
82 Citations (Scopus)

Phosphite (phosphorous acid): Fungicide, fertilizer or bio-stimulator?

Thao, H. T. B. & Yamakawa, T., Apr 1 2009, In : Soil Science and Plant Nutrition. 55, 2, p. 228-234 7 p.

Research output: Contribution to journalReview article

phosphorous acid
fungicide
fungicides
fertilizer
fertilizers

Structure and functions of bacterial ceramidase

Okino, N. & Ito, M., Oct 2009, In : Seikagaku. The Journal of Japanese Biochemical Society. 81, 10, p. 911-916 6 p.

Research output: Contribution to journalReview article

Ceramidases
Sphingomyelin Phosphodiesterase
Sphingolipids
Catalysis
Bacteria
2008

[Novel catabolic pathway of glycosphingolipids that includes a cytosolic glucocerebrosidase, klotho-related protein (KLrP)].

Hayashi, Y., Okino, N., Kakuta, Y. & Ito, M., Sep 1 2008, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 53, 12 Suppl, p. 1462-1467 6 p.

Research output: Contribution to journalReview article

Signal Transducing Adaptor Proteins
Biological Transport
Glucosylceramidase
Glucosylceramides
Gaucher Disease
1768 Citations (Scopus)

Guidelines for the use and interpretation of assays for monitoring autophagy in higher eukaryotes

Klionsky, D. J., Abeliovich, H., Agostinis, P., Agrawal, D. K., Aliev, G., Askew, D. S., Baba, M., Baehrecke, E. H., Bahr, B. A., Ballabio, A., Bamber, B. A., Bassham, D. C., Bergamini, E., Bi, X., Biard-Piechaczyk, M., Blum, J. S., Bredesen, D. E., Brodsky, J. L., Brumell, J. H., Brunk, U. T. & 216 others, Bursch, W., Camougrand, N., Cebollero, E., Cecconi, F., Chen, Y., Chin, L. S., Choi, A., Chu, C. T., Chung, J., Clarke, P. G. H., Clark, R. S. B., Clarke, S. G., Clavé, C., Cleveland, J. L., Codogno, P., Colombo, M. I., Cotomontes, A., Cregg, J. M., Cuervo, A. M., Debnath, J., Demarchi, F., Dennis, P. B., Dennis, P. A., Deretic, V., Devenish, R. J., Di Sano, F., Dice, J. F., DiFiglia, M., Dinesh-Kumar, S., Distelhorst, C. W., Djavaheri-Mergny, M., Dorsey, F. C., Dröge, W., Dron, M., Dunn, W. A., Duszenko, M., Eissa, N. T., Elazar, Z., Esclatine, A., Eskelinen, E. L., Fésüs, L., Finley, K. D., Fuentes, J. M., Fueyo, J., Fujisaki, K., Galliot, B., Gao, F. B., Gewirtz, D. A., Gibson, S. B., Gohla, A., Goldberg, A. L., Gonzalez, R., González-Estévez, C., Gorski, S., Gottlieb, R. A., Häussinger, D., He, Y. W., Heidenreich, K., Hill, J. A., Høyer-Hansen, M., Hu, X., Huang, W. P., Iwasaki, A., Jäättelä, M., Jackson, W. T., Jiang, X., Jin, S., Johansen, T., Jung, J. U., Kadowaki, M., Kang, C., Kelekar, A., Kessel, D. H., Kiel, J. A. K. W., Hong, P. K., Kimchi, A., Kinsella, T. J., Kiselyov, K., Kitamoto, K., Knecht, E., Komatsu, M., Kominami, E., Kondo, S., Kovács, A. L., Kroemer, G., Kuan, C. Y., Kumar, R., Kundu, M., Landry, J., Laporte, M., Le, W., Lei, H. Y., Lenardo, M. J., Levine, B., Lieberman, A., Lim, K. L., Lin, F. C., Liou, W., Liu, L. F., Lopez-Berestein, G., López-Otín, C., Lu, B., Macleod, K. F., Malorni, W., Martinet, W., Matsuoka, K., Mautner, J., Meijer, A. J., Meléndez, A., Michels, P., Miotto, G., Mistiaen, W. P., Mizushima, N., Mograbi, B., Monastyrska, I., Moore, M. N., Moreira, P. I., Moriyasu, Y., Motyl, T., Münz, C., Murphy, L. O., Naqvi, N. I., Neufeld, T. P., Nishino, I., Nixon, R. A., Noda, T., Nürnberg, B., Ogawa, M., Oleinick, N. L., Olsen, L. J., Ozpolat, B., Paglin, S., Palmer, G. E., Papassideri, I., Parkes, M., Perlmutter, D. H., Perry, G., Piacentini, M., Pinkas-Kramarski, R., Prescott, M., Proikascezanne, T., Raben, N., Rami, A., Reggiori, F., Rohrer, B., Rubinsztein, D. C., Ryan, K. M., Sadoshima, J., Sakagami, H., Sakai, Y., Sandri, M., Sasakawa, C., Sass, M., Schneider, C., Seglen, P. O., Seleverstov, O., Settleman, J., Shacka, J. J., Shapiro, I. M., Sibirny, A., Silva-Zacarin, E. C. M., Simon, H. U., Simone, C., Simonsen, A., Smith, M. A., Spanel-Borowski, K., Srinivas, V., Steeves, M., Stenmark, H., Stromhaug, P. E., Subauste, C. S., Sugimoto, S., Sulzer, D., Suzuki, T., Swanson, M. S., Tabas, I., Takeshita, F., Talbot, N. J., Tallóczy, Z., Tanaka, K., Tanaka, K., Tanida, I., Taylor, G. S., Taylor, J. P., Terman, A., Tettamanti, G., Thompson, C. B., Thumm, M., Tolkovsky, A. M., Tooze, S. A., Truant, R., Tumanovska, L. V., Uchiyama, Y., Ueno, T., Uzcátegui, N. L., Van Der Klei, I., Vaquero, E. C., Vellai, T., Vogel, M. W., Wang, H. G., Webster, P., Wiley, J. W., Xi, Z., Xiao, G., Yahalom, J., Yang, J. M., Yap, G., Yin, X. M., Yoshimori, T., Yu, L., Yue, Z., Yuzaki, M., Zabirnyk, O., Zheng, X., Zhu, X. & Deter, R. L., Feb 16 2008, In : Autophagy. 4, 2, p. 151-175 25 p.

Research output: Contribution to journalReview article

Autophagy
Eukaryota
Guidelines
Vacuoles
Lysosomes
2007
103 Citations (Scopus)

Ceramide/sphingosine/sphingosine 1-phosphate metabolism on the cell surface and in the extracellular space

Tani, M., Ito, M. & Igarashi, Y., Feb 1 2007, In : Cellular Signalling. 19, 2, p. 229-237 9 p.

Research output: Contribution to journalReview article

Sphingolipids
Sphingosine
Ceramides
Extracellular Space
Neutral Ceramidase
2006
22 Citations (Scopus)

Mechanisms of maintaining genetic stability by homologous recombination

Ishino, Y., Nishino, T. & Morikawa, K., Feb 1 2006, In : Chemical Reviews. 106, 2, p. 324-339 16 p.

Research output: Contribution to journalReview article

Proteins
DNA
Repair
Bacteria
Processing
22 Citations (Scopus)

Structure-specific DNA nucleases: Structural basis for 3D-scissors

Nishino, T., Ishino, Y. & Morikawa, K., Feb 1 2006, In : Current Opinion in Structural Biology. 16, 1, p. 60-67 8 p.

Research output: Contribution to journalReview article

Deoxyribonucleases
Holliday Junction Resolvases
DNA
Flap Endonucleases
Proliferating Cell Nuclear Antigen
2003
Neutral Ceramidase
Amidohydrolases
Species Specificity
Organ Specificity
Molecular Evolution
2002
1 Citation (Scopus)

Molecular evolution of neutral ceramidase: signalling molecule and virulence factor

Ito, M., Okino, N., Tani, M., Mitsutake, S. & Mori, K., 2002, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 47, 4 Suppl, p. 455-462 8 p.

Research output: Contribution to journalReview article

Neutral Ceramidase
Amidohydrolases
Membrane Microdomains
Sphingolipids
Sphingosine
14 Citations (Scopus)

Mutation analysis of the acid ceramidase gene in Japanese patients with Farber disease

Muramatsu, T., Sakai, N., Yanagihara, I., Yamada, M., Nishigaki, T., Kokubu, C., Tsukamoto, H., Ito, M. & Inui, K., Nov 1 2002, In : Journal of Inherited Metabolic Disease. 25, 7, p. 585-592 8 p.

Research output: Contribution to journalReview article

Farber Lipogranulomatosis
Acid Ceramidase
Mutation
Genes
Exons

Signal transduction of ceramide

Okazaki, T. & Ito, M., 2002, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 47, 4 Suppl, p. 438-441 4 p.

Research output: Contribution to journalReview article

Lysophospholipids
Sphingosine
Sphingomyelins
Arteriosclerosis
Ceramides
1998

Regulation of glycosphingolipid synthesis by ceramide revealed by an endoglycoceramidase application

Ito, M. & Komori, H., Jan 1 1998, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 43, 16 Suppl, p. 2488-2494 7 p.

Research output: Contribution to journalReview article

endoglycoceramidase
Molecular Sequence Data
Neoplastic Cell Transformation
Glucosyltransferases
Glycosphingolipids
41 Citations (Scopus)

Structural and functional identification of complement components of the bony fish, carp (Cyprinus carpio)

Nakao, M. & Yano, T., Dec 1 1998, In : Immunological Reviews. 166, p. 27-38 12 p.

Research output: Contribution to journalReview article

Carps
Fishes
Mannose-Binding Lectin
Aquaculture
Antibodies