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2020

An optimized metabarcoding method for mimiviridae

Prodinger, F., Endo, H., Gotoh, Y., Li, Y., Morimoto, D., Omae, K., Tominaga, K., Blanc-Mathieu, R., Takano, Y., Hayashi, T., Nagasaki, K., Yoshida, T. & Ogata, H., Apr 2020, In : Microorganisms. 8, 4, 506.

Research output: Contribution to journalArticle

Open Access

Bordetella dermonecrotic toxin is a neurotropic virulence factor that uses Cav3.1 as the cell surface receptor

Teruya, S., Hiramatsu, Y., Nakamura, K., Fukui-Miyazaki, A., Tsukamoto, K., Shinoda, N., Motooka, D., Nakamura, S., Ishigaki, K., Shinzawa, N., Nishida, T., Sugihara, F., Maeda, Y. & Horiguchi, Y., Mar 1 2020, In : mBio. 11, 2, e03146-19.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Chemical acetylation of mitochondrial transcription factor A occurs on specific lysine residues and affects its ability to change global DNA topology

Fang, Y., Akimoto, M., Mayanagi, K., Hatano, A., Matsumoto, M., Matsuda, S., Yasukawa, T. & Kang, D., May 18 2020, In : Mitochondrion. 53, p. 99-108

Research output: Contribution to journalArticle

Chronic inflammatory changes and oxidative stress in the background of “pancreatic ductal adenocarcinoma concomitant with intraductal papillary mucinous neoplasm”

Matsuda, R., Miyasaka, Y., Yamada, Y., Kawata, J., Sakihama, K., Yamamoto, T., Saeki, K., Yamamoto, H., Ohishi, Y., Koga, Y., Nakamura, M. & Oda, Y., 2020, (Accepted/In press) In : Virchows Archiv.

Research output: Contribution to journalArticle

Comparative Study of Myxofibrosarcoma with Undifferentiated Pleomorphic Sarcoma: Histopathologic and Clinicopathologic Review

Yoshimoto, M., Yamada, Y., Ishihara, S., Kohashi, K., Toda, Y., Ito, Y., Yamamoto, H., Furue, M., Nakashima, Y. & Oda, Y., Jan 1 2020, In : American Journal of Surgical Pathology. 44, 1, p. 87-97 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Complete Genome Sequence of Helicobacter pylori Strain ATCC 43504, a Type Strain That Can Infect Gerbils

Kinoshita-Daitoku, R., Ogura, Y., Kiga, K., Maruyama, F., Kondo, T., Nakagawa, I., Hayashi, T. & Mimuro, H., Apr 30 2020, In : Microbiology Resource Announcements. 9, 18, e00105-20.

Research output: Contribution to journalArticle

Open Access

Concomitant Intraductal Papillary Mucinous Neoplasm in Pancreatic Ductal Adenocarcinoma Is an Independent Predictive Factor for the Occurrence of New Cancer in the Remnant Pancreas

Matsuda, R., Miyasaka, Y., Ohishi, Y., Yamamoto, T., Saeki, K., Mochidome, N., Abe, A., Ozono, K., Shindo, K., Ohtsuka, T., Kikutake, C., Nakamura, M. & Oda, Y., May 1 2020, In : Annals of surgery. 271, 5, p. 941-948 8 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Diagnostic utility of pan-Trk immunohistochemistry for inflammatory myofibroblastic tumours

Yamamoto, H., Nozaki, Y., Kohashi, K., Kinoshita, I. & Oda, Y., Apr 1 2020, In : Histopathology. 76, 5, p. 774-778 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of shiga toxin-producing escherichia coli O145:H28

Nakamura, K., Murase, K., Sato, M. P., Toyoda, A., Itoh, T., Mainil, J. G., Piérard, D., Yoshino, S., Kimata, K., Isobe, J., Seto, K., Etoh, Y., Narimatsu, H., Saito, S., Yatsuyanagi, J., Lee, K., Iyoda, S., Ohnishi, M., Ooka, T., Gotoh, Y. & 2 others, Ogura, Y. & Hayashi, T., 2020, In : Microbial Genomics. 6, 1, 000323.

Research output: Contribution to journalArticle

Open Access
4 Citations (Scopus)

Drop head syndrome as a rare complication in mixed connective tissue disease

Akagi, M., Umeda, M., Hashisako, M., Hara, K., Tsuji, S., Endo, Y., Takatani, A., Shimizu, T., Fukui, S., Koga, T., Kawashiri, S. Y., Iwamoto, N., Igawa, T., Ichinose, K., Tamai, M., Nakamura, H., Origuchi, T., Niino, D. & Kawakami, A., Mar 1 2020, In : Internal Medicine. 59, 5, p. 729-732 4 p.

Research output: Contribution to journalArticle

Open Access

Epidemiological Aspects of Escherichia albertii Outbreaks in Japan and Genetic Characteristics of the Causative Pathogen

Masuda, K., Ooka, T., Akita, H., Hiratsuka, T., Takao, S., Fukada, M., Inoue, K., Honda, M., Toda, J., Sugitani, W., Narimatsu, H., Ishioka, T., Hirai, S., Sekizuka, T., Kuroda, M., Morita, Y., Hayashi, T., Kimura, H., Oishi, K., Ohnishi, M. & 2 others, Fujimoto, S. & Murakami, K., Feb 2020, In : Foodborne Pathogens and Disease. 17, 2, p. 144-150 7 p.

Research output: Contribution to journalArticle

Escherichia albertii Pathogenesis

Gomes, T. A. T., Ooka, T., Hernandes, R. T., Yamamoto, D. & Hayashi, T., Jun 1 2020, In : EcoSal Plus. 9, 1

Research output: Contribution to journalArticle

Escherichia coli O8:H8 Carrying a novel variant of the heat-labile enterotoxin LT2 gene caused outbreaks of diarrhea

Ishimaru, K., Sasaki, M., Narimatsu, H., Arimizu, Y., Gotoh, Y., Nakamura, K., Hayashi, T. & Ogura, Y., Jan 1 2020, In : Open Forum Infectious Diseases. 7, 1

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Establishment and characterization of a novel primitive yolk sac tumour cell line, TC587

Iwasaki, T., Kohashi, K., Ohno, M., Taguchi, T. & Oda, Y., Jan 1 2020, In : Anticancer research. 40, 2, p. 759-766 8 p.

Research output: Contribution to journalArticle

Expression of PD-L1, PD-L2, and IDO1 on tumor cells and density of CD8-positive tumor-infiltrating lymphocytes in early-stage lung adenocarcinoma according to histological subtype

Takada, K., Toyokawa, G., Kinoshita, F., Jogo, T., Kohashi, K., Wakasu, S., Ono, Y., Tanaka, K., Oba, T., Osoegawa, A., Tagawa, T., Azuma, K., Okamoto, I., Shimokawa, M., Oda, Y. & Mori, M., 2020, (Accepted/In press) In : Journal of Cancer Research and Clinical Oncology.

Research output: Contribution to journalArticle

Genomic characterization of closely related species in the Rumoiensis clade infers ecogenomic signatures to non-marine environments

Tanaka, M., Kumakura, D., Mino, S., Doi, H., Ogura, Y., Hayashi, T., Yumoto, I., Cai, M., Zhou, Y. G., Gomez-Gil, B., Araki, T. & Sawabe, T., 2020, (Accepted/In press) In : Environmental Microbiology.

Research output: Contribution to journalArticle

Group A Streptococcus establishes pharynx infection by degrading the deoxyribonucleic acid of neutrophil extracellular traps

Tanaka, M., Kinoshita-Daitoku, R., Kiga, K., Sanada, T., Zhu, B., Okano, T., Aikawa, C., Iida, T., Ogura, Y., Hayashi, T., Okubo, K., Kurosawa, M., Hirahashi, J., Suzuki, T., Nakagawa, I., Nangaku, M. & Mimuro, H., Dec 1 2020, In : Scientific reports. 10, 1, 3251.

Research output: Contribution to journalArticle

Open Access

Hypoosmotic stress induces flagellar biosynthesis and swimming motility in Escherichia albertii

Ikeda, T., Shinagawa, T., Ito, T., Ohno, Y., Kubo, A., Nishi, J., Gotoh, Y., Ogura, Y., Ooka, T. & Hayashi, T., Dec 1 2020, In : Communications Biology. 3, 1, 87.

Research output: Contribution to journalArticle

Open Access

Lysosome-Associated Membrane Proteins Support the Furin-Mediated Processing of the Mumps Virus Fusion Protein

Ueo, A., Kubota, M., Shirogane, Y., Ohno, S., Hashiguchi, T. & Yanagi, Y., Jun 1 2020, In : Journal of virology. 94, 12

Research output: Contribution to journalArticle

Malignant transformation of phosphaturic mesenchymal tumor: A case report and literature review

Oyama, N., Kojima-Ishii, K., Toda, N., Matsuo, T., Tocan, V., Okubo, K., Oba, U., Koga, Y., Setsu, N., Yamada, Y., Kohashi, K., Nakashima, Y., Oda, Y., Ihara, K. & Ohga, S., 2020, In : Clinical Pediatric Endocrinology. 29, 2, p. 69-75 7 p.

Research output: Contribution to journalArticle

Open Access

Mutational diversity in mutY deficient Helicobacter pylori and its effect on adaptation to the gastric environment

Kinoshita-Daitoku, R., Kiga, K., Sanada, T., Ogura, Y., Bo, Z., Iida, T., Yokomori, R., Kuroda, E., Tanaka, M., Sood, A., Suzuki, T., Nakai, K., Hayashi, T. & Mimuro, H., May 7 2020, In : Biochemical and Biophysical Research Communications. 525, 3, p. 806-811 6 p.

Research output: Contribution to journalArticle

Non-pathogenic Escherichia coli acquires virulence by mutating a growth-essential LPS transporter

Kaito, C., Yoshikai, H., Wakamatsu, A., Miyashita, A., Matsumoto, Y., Fujiyuki, T., Kato, M., Ogura, Y., Hayashi, T., Isogai, T. & Sekimizu, K., Apr 2020, In : PLoS pathogens. 16, 4, e1008469.

Research output: Contribution to journalArticle

Open Access

PD-L1 and IDO1 expression and tumor-infiltrating lymphocytes in osteosarcoma patients: comparative study of primary and metastatic lesions

Toda, Y., Kohashi, K., Yamada, Y., Yoshimoto, M., Ishihara, S., Ito, Y., Iwasaki, T., Yamamoto, H., Matsumoto, Y., Nakashima, Y., Mawatari, M. & Oda, Y., 2020, (Accepted/In press) In : Journal of Cancer Research and Clinical Oncology.

Research output: Contribution to journalArticle

Programmed death ligand 1/indoleamine 2,3-dioxygenase 1 expression and tumor-infiltrating lymphocyte status in renal cell carcinoma with sarcomatoid changes and rhabdoid features

Kiyozawa, D., Takamatsu, D., Kohashi, K., Kinoshita, F., Ishihara, S., Toda, Y., Eto, M. & Oda, Y., Jul 2020, In : Human Pathology. 101, p. 31-39 9 p.

Research output: Contribution to journalArticle

Retroperitoneal Myxofibrosarcoma: A Controversial Entity

Yoshimoto, M., Yamada, Y., Ishihara, S., Kohashi, K., Toda, Y., Ito, Y., Susuki, Y., Kinoshita, I., Yamamoto, H., Nakashima, Y. & Oda, Y., Jun 2020, In : Pathology Research and Practice. 216, 6, 152969.

Research output: Contribution to journalArticle

Schizophyllum commune sinusitis after allogeneic bone marrow transplantation for myelodysplastic syndrome: A case report and literature review

Narazaki, T., Nakashima, Y., Tsukamoto, Y., Nishida, R., Tsuda, M., Muta, H., Kimura, D., Masuda, T., Takamatsu, A., Kohashi, K., Murakami, D., Shiratsuchi, M. & Ogawa, Y., Feb 1 2020, In : Transplant Infectious Disease. 22, 1, e13205.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Soft Tissue Special Issue: Skeletal Muscle Tumors: A Clinicopathological Review

Kohashi, K., Kinoshita, I. & Oda, Y., Mar 1 2020, In : Head and Neck Pathology. 14, 1, p. 12-20 9 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Solid-type poorly differentiated adenocarcinoma of the stomach: Deficiency of mismatch repair and SWI/SNF complex

Tsuruta, S., Kohashi, K., Yamada, Y., Fujiwara, M., Koga, Y., Ihara, E., Ogawa, Y., Oki, E., Nakamura, M. & Oda, Y., Mar 1 2020, In : Cancer Science. 111, 3, p. 1008-1019 12 p.

Research output: Contribution to journalArticle

Open Access

Staphylococcus aureus virulence affected by an alternative nisin a resistance mechanism

Kawada-Matsuo, M., Watanabe, A., Arii, K., Oogai, Y., Noguchi, K., Miyawaki, S., Hayashi, T. & Komatsuzawa, H., Apr 1 2020, In : Applied and environmental microbiology. 86, 8, p. 1-14 14 p.

Research output: Contribution to journalArticle

The accessory subunit of human DNA polymerase γ is required for mitochondrial DNA maintenance and is able to stabilize the catalytic subunit

Do, Y., Matsuda, S., Inatomi, T., Nakada, K., Yasukawa, T. & Kang, D., May 26 2020, In : Mitochondrion. 53, 133-139

Research output: Contribution to journalArticle

The SWI/SNF chromatin-remodeling complex status in renal cell carcinomas with sarcomatoid or rhabdoid features

Kinoshita, F., Kohashi, K., Sugimoto, M., Takamatsu, D., Kiyozawa, D., Eto, M. & Oda, Y., Jan 1 2020, (Accepted/In press) In : Virchows Archiv.

Research output: Contribution to journalArticle

1 Citation (Scopus)
2019

A case of autonomous cortisol secretion in a patient with subclinical Cushing's syndrome, GNAS mutation, and paradoxical cortisol response to dexamethasone

Sakaguchi, C., Ashida, K., Kohashi, K., Ohe, K., Fujii, Y., Yano, S., Matsuda, Y., Sakamoto, S., Sakamoto, R., Oda, Y., Nomura, M. & Ogawa, Y., Jan 22 2019, In : BMC Endocrine Disorders. 19, 1, 13.

Research output: Contribution to journalArticle

A highly efficient method for concentrating DNA from river water by combined coagulation and foam separation

Suzuki, Y., Imafuku, Y., Nishiyama, M., Teranishi, K., Jikumaru, A., Nukazawa, K. & Ogura, Y., Dec 12 2019, In : Separation Science and Technology (Philadelphia). 54, 18, p. 3128-3134 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Alternative oxidase capacity of mitochondria in microsporophylls may function in cycad thermogenesis

Inaba, Y. I., Sato, M., Sato, M. P., Kurayama, Y., Yamamoto, H., Ohata, M., Ogura, Y., Hayashi, T., Toyooka, K. & Inaba, T., Jun 2019, In : Plant physiology. 180, 2, p. 743-756 14 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Analysis of systemic lupus erythematosus-related interstitial pneumonia: a retrospective multicentre study

Enomoto, N., Egashira, R., Tabata, K., Hashisako, M., Kitani, M., Waseda, Y., Ishizuka, T., Watanabe, S., Kasahara, K., Izumi, S., Shiraki, A., Miyamoto, A., Kishi, K., Kishaba, T., Sugimoto, C., Inoue, Y., Kataoka, K., Kondoh, Y., Tsuchiya, Y., Baba, T. & 4 others, Sugiura, H., Tanaka, T., Sumikawa, H. & Suda, T., Dec 1 2019, In : Scientific reports. 9, 1, 7355.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Arsenate and microbial dynamics in different phosphorus regimes of the subtropical Pacific Ocean

Hashihama, F., Suwa, S., Kanda, J., Ehama, M., Sakuraba, R., Kinouchi, S., Sato, M., Yamaguchi, T., Saito, H., Ogura, Y., Hayashi, T., Mori, H., Kurokawa, K., Suzuki, S. & Hamasaki, K., Sep 2019, In : Progress in Oceanography. 176, 102115.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Association between peripheral blood markers and immune-related factors on tumor cells in patients with resected primary lung adenocarcinoma

Takada, K., Shimokawa, M., Tanaka, K., Kohashi, K., Haro, A., Osoegawa, A., Tagawa, T., Azuma, K., Okamoto, I., Oda, Y. & Mori, M., Jun 2019, In : PloS one. 14, 6, e0217991.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Association of Missense Polymorphism in HSD3B1 With Outcomes Among Men With Prostate Cancer Treated With Androgen-Deprivation Therapy or Abiraterone

Shiota, M., Narita, S., Akamatsu, S., Fujimoto, N., Sumiyoshi, T., Fujiwara, M., Uchiumi, T., Habuchi, T., Ogawa, O. & Eto, M., Feb 1 2019, In : JAMA network open. 2, 2, p. e190115

Research output: Contribution to journalArticle

Open Access
11 Citations (Scopus)

BspR/BtrA, an Anti-σ factor, regulates the ability of Bordetella bronchiseptica to cause cough in rats

Nakamura, K., Shinoda, N., Hiramatsu, Y., Ohnishi, S., Kamitani, S., Ogura, Y., Hayashi, T. & Horiguchi, Y., Mar 1 2019, In : mSphere. 4, 2, e00093-19.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Clinical and computed tomography characteristics of non-small cell lung cancer with ALK gene rearrangement: Comparison with EGFR mutation and ALK/EGFR-negative lung cancer

Mori, M., Hayashi, H., Fukuda, M., Honda, S., Kitazaki, T., Shigematsu, K., Matsuyama, N., Otsubo, M., Nagayasu, T., Hashisako, M., Tabata, K., Uetani, M. & Ashizawa, K., Apr 2019, In : Thoracic Cancer. 10, 4, p. 872-879 8 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)

Clinicopathological review of solitary fibrous tumors: dedifferentiation is a major cause of patient death

Yamada, Y., Kohashi, K., Kinoshita, I., Yamamoto, H., Iwasaki, T., Yoshimoto, M., Ishihara, S., Toda, Y., Itou, Y., Koga, Y., Hashisako, M., Nozaki, Y., Kiyozawa, D., Kitahara, D., Inoue, T., Mukai, M., Honda, Y., Toyokawa, G., Tsuchihashi, K., Matsushita, Y. & 9 others, Fushimi, F., Taguchi, K., Tamiya, S., Oshiro, Y., Furue, M., Nakashima, Y., Suzuki, S., Iwaki, T. & Oda, Y., Oct 1 2019, In : Virchows Archiv. 475, 4, p. 467-477 11 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Co-expression of IDO1 and PD-L1 in lung squamous cell carcinoma: Potential targets of novel combination therapy

Takada, K., Kohashi, K., Shimokawa, M., Haro, A., Osoegawa, A., Tagawa, T., Seto, T., Oda, Y. & Maehara, Y., Feb 2019, In : Lung Cancer. 128, p. 26-32 7 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes

Sato, M. P., Ogura, Y., Nakamura, K., Nishida, R., Gotoh, Y., Hayashi, M., Hisatsune, J., Sugai, M., Takehiko, I. & Hayashi, T., Oct 1 2019, In : DNA Research. 26, 5, p. 391-398 8 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)