Research Output

2020

A defective prostaglandin E synthase could affect egg formation in the silkworm Bombyx mori

Yamamoto, K., Tsubota, T., Uno, T., Tsujita, Y., Yokota, S., Sezutsu, H. & Mita, K., Jan 8 2020, In : Biochemical and Biophysical Research Communications. 521, 2, p. 347-352 6 p.

Research output: Contribution to journalArticle

A Promising Method for Calculating True Steady-State Metabolite Concentrations in Large-Scale Metabolic Reaction Network Models

Miyawaki-Kuwakado, A., Komori, S. & Shiraishi, F., Jan 1 2020, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 17, 1, p. 27-36 10 p., 8410022.

Research output: Contribution to journalArticle

Author Correction: Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose (Scientific Reports, (2018), 8, 1, (12013), 10.1038/s41598-018-30508-4)

Higuchi, Y., Matsufuji, H., Tanuma, M., Arakawa, T., Mori, K., Yamada, C., Shofia, R., Matsunaga, E., Tashiro, K., Fushinobu, S. & Takegawa, K., Dec 1 2020, In : Scientific reports. 10, 1, 2873.

Research output: Contribution to journalComment/debate

Open Access

Biosynthesis of β-(1→5)-galactofuranosyl chains of fungal-type and o-mannose-type galactomannans within the invasive pathogen aspergillus fumigatus

Chihara, Y., Tanaka, Y., Izumi, M., Hagiwara, D., Watanabe, A., Takegawa, K., Kamei, K., Shibata, N., Ohta, K. & Oka, T., Jan 1 2020, In : mSphere. 5, 1, e00770.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Isolation and selection of plant growth promoting endophytic bacteria associated with healthy hevea brasiliensis for use as plant growth promoters in rubber seedlings under salinity stress

Khotchanalekha, K., Saksirirat, W., Na Ayutthaya, S. I., Sakai, K., Tashiro, Y., Okugawa, Y. & Tongpim, S., Jan 2020, In : Chiang Mai Journal of Science. 47, 1, p. 39-48 10 p.

Research output: Contribution to journalArticle

Methane production from food waste via mesophilic anaerobic digestion with ethanol pre-fermentation: Methanogenic pathway and microbial community analyses

Zou, H., Gao, M., Yu, M., Zhang, W., Zhang, S., Wu, C., Tashiro, Y. & Wang, Q., Feb 2020, In : Bioresource Technology. 297, 122450.

Research output: Contribution to journalArticle

Molecular survey of the phosphoserine phosphatase involved in L-serine synthesis by silkworms (Bombyx mori)

Haque, M. R., Hirowatari, A., Saruta, F., Furuya, S. & Yamamoto, K., Feb 1 2020, In : Insect Molecular Biology. 29, 1, p. 48-55 8 p.

Research output: Contribution to journalArticle

mRNA Localization in Plant Cells

Tian, L., Chou, H. L., Fukuda, M., Kumamaru, T. & Okita, T. W., Jan 1 2020, In : Plant physiology. 182, 1, p. 97-109 13 p.

Research output: Contribution to journalArticle

Open Access

Secretory production of N-glycan-deleted glycoprotein in Aspergillus oryzae

Li, Q., Higuchi, Y., Tanabe, K., Katakura, Y. & Takegawa, K., Jan 1 2020, (Accepted/In press) In : Journal of Bioscience and Bioengineering.

Research output: Contribution to journalArticle

The association between gut microbiota development and maturation of intestinal bile acid metabolism in the first 3 y of healthy Japanese infants

Tanaka, M., Sanefuji, M., Morokuma, S., Yoden, M., Momoda, R., Sonomoto, K., Ogawa, M., Kato, K. & Nakayama, J., Mar 3 2020, In : Gut Microbes. 11, 2, p. 205-216 12 p.

Research output: Contribution to journalArticle

The gelatinase biosynthesis-activating pheromone binds and stabilises the FsrB membrane protein in Enterococcus faecalis quorum sensing

Littlewood, S., Tattersall, H., Hughes, C. S., Hussain, R., Ma, P., Harding, S. E., Nakayama, J. & Phillips-Jones, M. K., Feb 1 2020, In : FEBS Letters. 594, 3, p. 553-563 11 p.

Research output: Contribution to journalArticle

Open Access
2019

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

Matsunami, M., Suzuki, M., Haramoto, Y., Fukui, A., Inoue, T., Yamaguchi, K., Uchiyama, I., Mori, K., Tashiro, K., Ito, Y., Takeuchi, T., Suzuki, K. I. T., Agata, K., Shigenobu, S. & Hayashi, T., Jan 1 2019, In : DNA Research. 26, 3, p. 217-229 13 p.

Research output: Contribution to journalArticle

Open Access
3 Citations (Scopus)
Open Access

Association between Serum β-Alanine and Risk of Dementia

Hata, J., Ohara, T., Katakura, Y., Shimizu, K., Yamashita, S., Yoshida, D., Honda, T., Hirakawa, Y., Shibata, M., Sakata, S., Kitazono, T., Kuhara, S. & Ninomiya, T., Sep 1 2019, In : American journal of epidemiology. 188, 9, p. 1637-1645 9 p.

Research output: Contribution to journalArticle

Author Correction: Diversity in gut bacterial community of school-age children in Asia (Scientific Reports, (2015), 5, 1, (8397), 10.1038/srep08397)

Nakayama, J., Watanabe, K., Jiang, J., Matsuda, K., Chao, S. H., Haryono, P., La-ongkham, O., Sarwoko, M. A., Sujaya, I. N., Zhao, L., Chen, K. T., Chen, Y. P., Chiu, H. H., Hidaka, T., Huang, N. X., Kiyohara, C., Kurakawa, T., Sakamoto, N., Sonomoto, K., Tashiro, K. & 9 others, Tsuji, H., Chen, M. J., Leelavatcharamas, V., Liao, C. C., Nitisinprasert, S., Rahayu, E. S., Ren, F. Z., Tsai, Y. C. & Lee, Y. K., Dec 1 2019, In : Scientific reports. 9, 1, 6530.

Research output: Contribution to journalComment/debate

Open Access

BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice

Ikeda, T., Tanaka, W., Toriba, T., Suzuki, C., Maeno, A., Tsuda, K., Shiroishi, T., Kurata, T., Sakamoto, T., Murai, M., Matsusaka, H., Kumamaru, T. & Hirano, H. Y., May 2019, In : Plant Journal. 98, 3, p. 465-478 14 p.

Research output: Contribution to journalArticle

Carnosine induces intestinal cells to secrete exosomes that activate neuronal cells

Sugihara, Y., Onoue, S., Tashiro, K., Sato, M., Hasegawa, T. & Katakura, Y., May 2019, In : PloS one. 14, 5, e0217394.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Catechol O-methyltransferase homologs in Schizosaccharomyces pombe are response factors to alkaline and salt stress

Tominaga, A., Higuchi, Y., Mori, H., Akai, M., Suyama, A., Yamada, N. & Takegawa, K., Jun 18 2019, In : Applied Microbiology and Biotechnology. 103, 12, p. 4881-4887 7 p.

Research output: Contribution to journalArticle

Cellulase productivity of Trichoderma reesei mutants developed in Japan varies with varying pH conditions

Hirasawa, H., Shioya, K., Mori, K., Tashiro, K., Aburatani, S., Shida, Y., Kuhara, S. & Ogasawara, W., Sep 2019, In : Journal of Bioscience and Bioengineering. 128, 3, p. 264-273 10 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Chemo-enzymatic synthesis of p-nitrophenyl β-D-galactofuranosyl disaccharides from Aspergillus sp. fungal-type galactomannan

Ota, R., Okamoto, Y., Vavricka, C. J., Oka, T., Matsunaga, E., Takegawa, K., Kiyota, H. & Izumi, M., Feb 1 2019, In : Carbohydrate Research. 473, p. 99-103 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Complete genome sequence of enterococcus faecium qu50, a thermophilic lactic acid bacterium capable of metabolizing xylose

Abe, K., Kanesaki, Y., Abdel-Rahman, M. A., Watanabe, S., Zendo, T., Chibazakura, T., Shimizu-Kadota, M., Sonomoto, K. & Yoshikawa, H., May 23 2019, In : Microbiology Resource Announcements. 8, 21, e0041319.

Research output: Contribution to journalArticle

Open Access

Comprehensive behavioral analysis and quantification of brain free amino acids of C57BL/6J congenic mice carrying the 1473G allele in tryptophan hydroxylase-2

Koshimizu, H., Hirata, N., Takao, K., Toyama, K., Ichinose, T., Furuya, S. & Miyakawa, T., Mar 2019, In : Neuropsychopharmacology Reports. 39, 1, p. 56-60 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Constitutive expression of phosphoketolase, a key enzyme for metabolic shift from homo- to heterolactic fermentation in Enterococcus mundtii QU 25

Nabeta, K., Watanabe, S., Chibazakura, T., Zendo, T., Sonomoto, K., Shimizu-Kadota, M. & Yoshikawa, H., Jan 1 2019, In : Bioscience of Microbiota, Food and Health. 38, 3, p. 111-114 4 p.

Research output: Contribution to journalComment/debate

Open Access

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., Mar 1 2019, In : Review of Scientific Instruments. 90, 3, 035106.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Correction to: Genetic diversity and genetic variation in morpho-physiological traits to improve heat tolerance in Spring barley (Molecular Biology Reports, (2018), 45, 6, (2441-2453), 10.1007/s11033-018-4410-6)

Sallam, A., Amro, A., Elakhdar, A., Dawood, M. F. A., Kumamaru, T. & Stephen Baenziger, P., Apr 1 2019, In : Molecular biology reports. 46, 2, 1 p.

Research output: Contribution to journalComment/debate

Dynamics of microbial populations responsible for biodegradation during the full-scale treatment of palm oil mill effluent

Mohd-Nor, D., Ramli, N., Sharuddin, S. S., Hassan, M. A., Mustapha, N. A., Ariffin, H., Sakai, K., Tashiro, Y., Shirai, Y. & Maeda, T., Jan 1 2019, In : Microbes and Environments. 34, 2, p. 121-128 8 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Effect of high temperature on starch biosynthetic enzymes and starch structure in japonica rice cultivar ‘Akitakomachi’ (Oryza sativa L.) endosperm and palatability of cooked rice

Kato, K., Suzuki, Y., Hosaka, Y., Takahashi, R., Kodama, I., Sato, K., Kawamoto, T., Kumamaru, T. & Fujita, N., May 1 2019, In : Journal of Cereal Science. 87, p. 209-214 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Chowdhury, V. S., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm

Elakhdar, A., Ushijima, T., Fukuda, M., Yamashiro, N., Kawagoe, Y. & Kumamaru, T., Apr 2019, In : Plant Science. 281, p. 223-231 9 p.

Research output: Contribution to journalArticle

Open Access

Galactofuranosidase from JHA 19 Streptomyces sp. subcloning and biochemical characterization

Seničar, M., Legentil, L., Ferrières, V., Eliseeva, S. V., Petoud, S., Takegawa, K., Lafite, P. & Daniellou, R., Jul 1 2019, In : Carbohydrate Research. 480, p. 35-41 7 p.

Research output: Contribution to journalArticle

Highly efficient continuous acetone–butanol–ethanol production from mixed sugars without carbon catabolite repression

Kihara, T., Noguchi, T., Tashiro, Y., Sakai, K. & Sonomoto, K., Sep 2019, In : Bioresource Technology Reports. 7, 100185.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Identification and characterization of superoxide dismutase in silkworm seminal fluid

Nagaoka, S. & Yamamoto, K., Jan 1 2019, In : Journal of Insect Biotechnology and Sericology. 88, 2, p. 39-47 9 p.

Research output: Contribution to journalArticle

Identification and expression analysis of the replication factor C protein in the silkworm, Bombyx mori

Yamamoto, K., Haque, M. R. & Saruta, F., Jan 1 2019, In : Journal of Insect Biotechnology and Sericology. 88, 1, p. 17-20 4 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)
4 Citations (Scopus)

Identification of polyphenols that repair the ultraviolet-B-induced DNA damage via SIRT1-dependent XPC/XPA activation

Chong, Z., Matsuo, H., Onoue, S., Yamamoto, H., Ito, H. & Katakura, Y., Mar 2019, In : Journal of Functional Foods. 54, p. 119-127 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Isolation and characterization of spontaneous phage-resistant mutants of Lactobacillus paracasei

Sunthornthummas, S., Doi, K., Rangsiruji, A., Krajangsung, S., Sarawaneeyaruk, S. & Pringsulaka, O., May 1 2019, In : Food Control. 99, p. 114-123 10 p.

Research output: Contribution to journalArticle

Koji glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice

Hamajima, H., Tanaka, M., Miyagawa, M., Sakamoto, M., Nakamura, T., Yanagita, T., Nishimukai, M., Mitsutake, S., Nakayama, J., Nagao, K. & Kitagaki, H., Jan 1 2019, In : Bioscience, Biotechnology and Biochemistry. 83, 8, p. 1514-1522 9 p.

Research output: Contribution to journalArticle

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Chowdhury, V. S., Jun 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
1 Citation (Scopus)

Mode and structure of the bacterial community on human scalp hair

Watanabe, K., Nishi, E., Tashiro, Y. & Sakai, K., Jan 1 2019, In : Microbes and Environments. 34, 3, p. 252-259 8 p.

Research output: Contribution to journalArticle

Open Access

Modification of carbon metabolism in Synechococcus elongatus PCC 7942 by cyanophage-derived sigma factors for bioproduction improvement

Sawa, N., Tatsuke, T., Ogawa, A., Hirokawa, Y., Osanai, T. & Hanai, T., Feb 2019, In : Journal of Bioscience and Bioengineering. 127, 2, p. 256-264 9 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Molecular characterization and expression analysis of a phosphoserine aminotransferase involving l-serine synthesis from silkworm, Bombyx mori

Haque, M. R., Hirowatari, A., Koyanagi, A., Ichinose, T., Abiru, M., Mohri, S., Furuya, S. & Yamamoto, K., Jun 2019, In : Archives of insect biochemistry and physiology. 101, 2, e21553.

Research output: Contribution to journalArticle

Molecular structure of a 5,10-methylenetetrahydrofolate dehydrogenase from the silkworm Bombyx mori

Haque, M. R., Higashiura, A., Nakagawa, A., Hirowatari, A., Furuya, S. & Yamamoto, K., Apr 2019, In : FEBS Open Bio. 9, 4, p. 618-628 11 p.

Research output: Contribution to journalArticle

Open Access
2 Citations (Scopus)

Plasmid-encoded glycosyltransferase operon is responsible for exopolysaccharide production, cell aggregation, and bile resistance in a probiotic strain, Lactobacillus brevis KB290

Fukao, M., Zendo, T., Inoue, T., Nakayama, J., Suzuki, S., Fukaya, T., Yajima, N. & Sonomoto, K., Oct 2019, In : Journal of Bioscience and Bioengineering. 128, 4, p. 391-397 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Protective effect of lactobacillus reuteri KUB-AC5 against salmonella enteritidis challenge in chickens

Nakphaichit, M., Sobanbua, S., Siemuang, S., Vongsangnak, W., Nakayama, J. & Nitisinprasert, S., Jan 1 2019, In : Beneficial Microbes. 10, 1, p. 43-54 12 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)