Research Output

Construction of Escherichia coli dnaK-deletion mutant infected by λDE3 for overexpression and purification of recombinant GrpE proteins

Sugimoto, S., Higashi, C., Yoshida, H. & Sonomoto, K., Jul 1 2008, In : Protein Expression and Purification. 60, 1, p. 31-36 6 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)
7 Citations (Scopus)

Continuous butanol fermentation from xylose with high cell density by cell recycling system

Zheng, J., Tashiro, Y., Yoshida, T., Gao, M., Wang, Q. & Sonomoto, K., Jan 1 2013, In : Bioresource Technology. 129, p. 360-365 6 p.

Research output: Contribution to journalArticle

51 Citations (Scopus)

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., Mar 1 2019, In : Review of Scientific Instruments. 90, 3, 035106.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Continuous D-lactic acid production by a novelthermotolerant Lactobacillus delbrueckii subsp. lactis QU 41

Tashiro, Y., Kaneko, W., Sun, Y., Shibata, K., Inokuma, K., Zendo, T. & Sonomoto, K., Mar 1 2011, In : Applied Microbiology and Biotechnology. 89, 6, p. 1741-1750 10 p.

Research output: Contribution to journalArticle

71 Citations (Scopus)

Continuous Production of Blue Pigments by Immobilized Plant Cells and Characterization of the Pigments

SONOMOTO, KENJI., NAKAJIMA, HIROKI., SATO, FUMIHIKO., ICHIMURA, KUNIHIRO., YAMADA, YASUYUKI. & TANAKA, ATSUO., Dec 1990, In : Annals of the New York Academy of Sciences. 613, 1, p. 542-546 5 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Continuous production of l-serine by immobilized growing Corynebacterium glycinophilum cells

Tanaka, T., Yamamoto, K., Towprayoon, S., Nakajima, H., Sonomoto, K., Yokozeki, K., Kubota, K. & Tanaka, A., Jun 1 1989, In : Applied Microbiology and Biotechnology. 30, 6, p. 564-568 5 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Contribution of maternal mRNA for maintenance of Ca2+-dependent reaggregating activity in dissociated cells of Xenopus laevis embryos

Shiokawa, K., Tashiro, K., Oka, T. & Yamana, K., Nov 1983, In : Cell Differentiation. 13, 3, p. 247-255 9 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Control mechanism for a bacterial sugar-transport system: Theoretical hypothesis

Okamoto, M. & Hayashi, K., Apr 21 1985, In : Journal of Theoretical Biology. 113, 4, p. 785-790 6 p.

Research output: Contribution to journalLetter

10 Citations (Scopus)

Cooperative transport between NukFEG and NukH in immunity against the lantibiotic nukacin ISK-1 produced by Staphylococcus warneri ISK-1

Okuda, K. I., Aso, Y., Nakayama, J. & Sonomoto, K., Jan 1 2008, In : Journal of bacteriology. 190, 1, p. 356-362 7 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Coordinated regulation by two VPS9 domain-containing guanine nucleotide exchange factors in small GTPase Rab5 signaling pathways in fission yeast

Tsukamoto, Y., Kagiwada, S., Shimazu, S., Takegawa, K., Noguchi, T. & Miyamoto, M., Mar 20 2015, In : Biochemical and Biophysical Research Communications. 458, 4, p. 802-809 8 p., 33423.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Correction to: Genetic diversity and genetic variation in morpho-physiological traits to improve heat tolerance in Spring barley (Molecular Biology Reports, (2018), 45, 6, (2441-2453), 10.1007/s11033-018-4410-6)

Sallam, A., Amro, A., Elakhdar, A., Dawood, M. F. A., Kumamaru, T. & Stephen Baenziger, P., Apr 1 2019, In : Molecular biology reports. 46, 2, 1 p.

Research output: Contribution to journalComment/debate

Corrigendum: Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.) (Scientific Reports, (2017), 7, 1, (41124), 10.1038/srep41124)

Mori, K., Shirasawa, K., Nogata, H., Hirata, C., Tashiro, K., Habu, T., Kim, S., Himeno, S., Kuhara, S. & Ikegami, H., Sep 25 2017, In : Scientific reports. 7, 1, 46784.

Research output: Contribution to journalComment/debate

Open Access
2 Citations (Scopus)
18 Citations (Scopus)

Critical roles of mucin 1 glycosylation by transactivated polypeptide N-acetylgalactosaminyltransferase 6 in mammary carcinogenesis

Park, J. H., Nishidate, T., Kijima, K., Ohashi, T., Takegawa, K., Fujikane, T., Hirata, K., Nakamura, Y. & Katagiri, T., Apr 1 2010, In : Cancer Research. 70, 7, p. 2759-2769 11 p.

Research output: Contribution to journalArticle

112 Citations (Scopus)

Crystallization and preliminary X-ray analysis of a putative sensor histidine kinase domain: The C-terminal domain of HksP4 from Aquifex aeolicus VF5

Horita, S., Yamanaka, Y., Yamamura, A., Okada, A., Nakayama, J., Nagata, K. & Tanokura, M., Jul 1 2011, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 67, 7, p. 803-807 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori

Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y. & Yamamoto, K., Dec 1 2011, In : Biochimica et Biophysica Acta - General Subjects. 1810, 12, p. 1355-1360 6 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin e synthase activity

Yamamoto, K., Higashiura, A., Suzuki, M., Aritake, K., Urade, Y., Uodome, N. & Nakagawa, A., Jun 1 2013, In : Biochimica et Biophysica Acta - General Subjects. 1830, 6, p. 3711-3718 8 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

CUE domain-containing protein vps901 is required for vacuolar protein transport in Schizosaccharomyces pombe

Nakase, M., Tsukamoto, Y., Hosomi, A., Matsuda, T., Miyamoto, M. & Takegawa, K., Apr 30 2012, In : Bioscience, Biotechnology and Biochemistry. 76, 4, p. 652-659 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Cyanobacterial production of 1,3-propanediol directly from carbon dioxide using a synthetic metabolic pathway

Hirokawa, Y., Maki, Y., Tatsuke, T. & Hanai, T., Mar 1 2016, In : Metabolic Engineering. 34, p. 97-103 7 p.

Research output: Contribution to journalArticle

33 Citations (Scopus)

Cyclodepsipeptides produced by actinomycetes inhibit cyclic-peptide-mediated quorum sensing in Gram-positive bacteria

Desouky, S. E., Shojima, A., Singh, R. P., Matsufuji, T., Igarashi, Y., Suzuki, T., Yamagaki, T., Okubo, K. I., Ohtani, K., Sonomoto, K. & Nakayama, J., Jan 1 2015, In : FEMS microbiology letters. 362, 14, fnv109.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Cytogenetical Analysis of Chromosomal Aberration Due to Translocation Between the 23rd and 25th Linkage Groups in the Silkworm, Bombyx Mori

Banno, Y., Kawaguchi, Y. & Doira, H., Jan 1 1993, In : Hereditas. 118, 3, p. 259-263 5 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Cytosolic and mitochondrial surface factor-independent import of a synthetic peptide into mitochondria

Furuya, S., Mihara, K., Aimoto, S. & Omura, T., Jul 5 1991, In : EMBO Journal. 10, 7, p. 1759-1766 8 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Cytotechnology: Preface

Kamihira, M., Katakura, Y., Ito, A. & Shirahata, S., Aug 1 2010, In : Cytotechnology. 62, 4, p. 285-286 2 p.

Research output: Contribution to journalEditorial

Deciphering cellular functions of protein phosphatases by comparison of gene expression profiles in Saccharomyces cerevisiae

Hirasaki, M., Nakamura, F., Yamagishi, K., Numamoto, M., Shimada, Y., Uehashi, K., Muta, S., Sugiyama, M., Kaneko, Y., Kuhara, S. & Harashima, S., May 1 2010, In : Journal of Bioscience and Bioengineering. 109, 5, p. 433-441 9 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 2. Reactor performance

Shiraishi, F., Toyoda, K. & Miyakawa, H., Nov 15 2005, In : Chemical Engineering Journal. 114, 1-3, p. 145-151 7 p.

Research output: Contribution to journalArticle

24 Citations (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 1. Fundamental experiment for reactor design

Shiraishi, F., Ohkubo, D., Toyoda, K. & Yamaguchi, S., Nov 15 2005, In : Chemical Engineering Journal. 114, 1-3, p. 153-159 7 p.

Research output: Contribution to journalArticle

44 Citations (Scopus)

Decreased Tumorigenicity In Vivo When Transforming Growth Factor β Treatment Causes Cancer Cell Senescence

Katakura, Y., Nakata, E., Tabira, Y., Miura, T., Teruya, K., Tsuchiya, T. & Shirahata, S., Jan 1 2003, In : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 815-821 7 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Deduced primary structure of rat hepatocyte growth factor and expression of the mRNA in rat tissues

Tashiro, K., Hagiya, M., Nishizawa, T., Seki, T., Shimonishi, M., Shimizu, S. & Nakamura, T., Jan 1 1990, In : Proceedings of the National Academy of Sciences of the United States of America. 87, 8, p. 3200-3204 5 p.

Research output: Contribution to journalArticle

342 Citations (Scopus)

Deduced primary structure of rat tryptophan-2,3-dioxygenase

Maezono, K., Tashiro, K. & Nakamura, T., Jul 16 1990, In : Biochemical and Biophysical Research Communications. 170, 1, p. 176-181 6 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Deficiency of schnurri-2, an MHC enhancer binding protein, induces mild chronic inflammation in the brain and confers molecular, neuronal, and behavioral phenotypes related to schizophrenia

Takao, K., Kobayashi, K., Hagihara, H., Ohira, K., Shoji, H., Hattori, S., Koshimizu, H., Umemori, J., Toyama, K., Nakamura, H. K., Kuroiwa, M., Maeda, J., Atsuzawa, K., Esaki, K., Yamaguchi, S., Furuya, S., Takagi, T., Walton, N. M., Hayashi, N., Suzuki, H. & 7 others, Higuchi, M., Usuda, N., Suhara, T., Nishi, A., Matsumoto, M., Ishii, S. & Miyakawa, T., Jul 1 2013, In : Neuropsychopharmacology. 38, 8, p. 1409-1425 17 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)

Deficiency of starch synthase IIIa and IVb alters starch granule morphology from polyhedral to spherical in rice endosperm

Toyosawa, Y., Kawagoe, Y., Matsushima, R., Crofts, N., Ogawa, M., Fukuda, M., Kumamaru, T., Okazaki, Y., Kusano, M., Saito, K., Toyooka, K., Sato, M., Ai, Y., Jane, J. L., Nakamura, Y. & Fujita, N., Mar 1 2016, In : Plant physiology. 170, 3, p. 1255-1270 16 p.

Research output: Contribution to journalArticle

49 Citations (Scopus)

Delphinidin-3-glucoside suppresses lipid accumulation in HepG2 cells

Harada, G., Onoue, S., Inoue, C., Hanada, S. & Katakura, Y., Jan 1 2018, (Accepted/In press) In : Cytotechnology.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Denaturing gradient gel electrophoresis analysis of gut bacterial community for the Japanese earthworms

Nakamura, K. & Sakai, K., Dec 1 2011, In : Soil Science and Plant Nutrition. 57, 4, p. 519-528 10 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

De novo sequencing and comparative analysis of expressed sequence tags from gynodioecious fig (Ficus carica L.) fruits: Caprifig and common fig

Ikegami, H., Habu, T., Mori, K., Nogata, H., Hirata, C., Hirashima, K., Tashiro, K. & Kuhara, S., Jan 1 2013, In : Tree Genetics and Genomes. 9, 4, p. 1075-1088 14 p.

Research output: Contribution to journalArticle

14 Citations (Scopus)
86 Citations (Scopus)

Description of complete DNA sequence of two plasmids from the nukacin ISK-1 producer, Staphylococcus warneri ISK-1

Aso, Y., Koga, H., Sashihara, T., Nagao, J. I., Kanemasa, Y., Nakayama, J. & Sonomoto, K., Mar 2005, In : Plasmid. 53, 2, p. 164-178 15 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Description of durancin TW-49M, a novel enterocin B-homologous bacteriocin in carrot-isolated Enterococcus durans QU 49

Hu, C. B., Zendo, T., Nakayama, J. & Sonomoto, K., Sep 1 2008, In : Journal of Applied Microbiology. 105, 3, p. 681-690 10 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Design of bio-inspired fault-tolerant adaptive routing based on enzymatic feedback control in the cell: Towards averaging load balance in the network

Iwasaki, A., Nozoe, T., Kawauchi, T. & Okamoto, M., Dec 1 2007, Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007. p. 845-850 6 p. 4524217. (Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2 Citations (Scopus)

Design of virtual-labo-system for metabolic engineering: Development of biochemical engineering system analyzing tool-kit (BEST KIT)

Okamoto, M., Morita, Y., Tominaga, D., Tanaka, K., Kinoshita, N., Ueno, J. I., Miura, Y., Maki, Y. & Eguchi, Y., Jan 1 1997, In : Computers and Chemical Engineering. 21, SUPPL.1, p. S745-S750

Research output: Contribution to journalArticle

2 Citations (Scopus)

Detection and normalization of biases present in spotted cDNA microarray data: A composite method addressing dye, intensity-dependent, spatially-dependent, and print-order biases

Uchida, S., Nishida, Y., Satou, K., Muta, S., Tashiro, K. & Kuhara, S., May 18 2005, In : DNA Research. 12, 1, p. 1-7 7 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Detection of magnetic nanoparticles with superconducting quantum interference device (SQUID) magnetometer and application to immunoassays

Enpuku, K., Minotani, T., Gima, T., Kuroki, Y., Itoh, Y., Yamashita, M., Katakura, Y. & Kuhara, S., Dec 1 1999, In : Japanese Journal of Applied Physics, Part 2: Letters. 38, 10 A

Research output: Contribution to journalArticle

124 Citations (Scopus)

Detection of the single-stranded DNA of Streptomyces plasmid pSA1.1 and a binding histone-like protein

Yokoyama, E., Doi, K., Kimura, M. & Ogata, S., May 1 1996, In : FEMS microbiology letters. 138, 2-3, p. 197-200 4 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Determination of the rate of rRNA synthesis in Xenopus laevis triploid embryos produced by low‐temperature treatment

Tashiro, K., Misumi, Y., Shiokawa, K. & Yamana, K., Mar 1983, In : Journal of Experimental Zoology. 225, 3, p. 489-495 7 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Determining important regulatory relations of amino acids from dynamic network analysis of plasma amino acids

Shikata, N., Maki, Y., Nakatsui, M., Mori, M., Noguchi, Y., Yoshida, S., Takahashi, M., Kondo, N. & Okamoto, M., Jan 1 2010, In : Amino Acids. 38, 1, p. 179-187 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Detoxification enzymes of the lepidopteran insects

Yamamoto, K., Oct 2009, In : Seikagaku. The Journal of Japanese Biochemical Society. 81, 10, p. 909-911 3 p.

Research output: Contribution to journalShort survey

Developing anti-virulence chemotherapies by exploiting the diversity of microbial quorum sensing systems

Yousuf, B., Adachi, K. & Nakayama, J., May 30 2018, Biotechnological Applications of Quorum Sensing Inhibitors. Springer Singapore, p. 151-208 58 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Development and evaluation of rice giant embryo mutants for high oil content originated from a high-yielding cultivar ‘Mizuhochikara’

Sakata, M., Seno, M., Matsusaka, H., Takahashi, K., Nakamura, Y., Yamagata, Y., Angeles, E. R., Mochizuki, T., Kumamaru, T., Sato, M., Enomoto, A., Tashiro, K., Kuhara, S., Satoh, H. & Yoshimura, A., Jan 1 2016, In : Breeding Science. 66, 3, p. 425-433 9 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)