Research Output 1979 2020

2019
1 Citation (Scopus)

Smart fermentation engineering for butanol production: designed biomass and consolidated bioprocessing systems

Zhao, T., Tashiro, Y. & Sonomoto, K., Dec 1 2019, In : Applied Microbiology and Biotechnology. 103, 23-24, p. 9359-9371 13 p.

Research output: Contribution to journalReview article

Butanols
Acetone
Biomass
Fermentation
Ethanol

Structural basis for the specific cleavage of core-fucosylated N-glycans by endo-N-acetylglucosaminidase from the fungus Cordyceps militaris

Seki, H., Huang, Y., Arakawa, T., Yamada, C., Kinoshita, T., Iwamoto, S., Higuchi, Y., Takegawa, K. & Fushinobu, S., Jan 1 2019, In : Journal of Biological Chemistry. 294, 45, p. 17143-17154 12 p.

Research output: Contribution to journalArticle

Cordyceps
Acetylglucosaminidase
Fucose
Fungi
Polysaccharides
1 Citation (Scopus)

Synthetic microbial consortium with specific roles designated by genetic circuits for cooperative chemical production

Honjo, H., Iwasaki, K., Soma, Y., Tsuruno, K., Hamada, H. & Hanai, T., Sep 1 2019, In : Metabolic Engineering. 55, p. 268-275 8 p.

Research output: Contribution to journalArticle

Microbial Consortia
Enzymes
Networks (circuits)
Microorganisms
Metabolic Networks and Pathways

The association between gut microbiota development and maturation of intestinal bile acid metabolism in the first 3 y of healthy Japanese infants

Tanaka, M., Sanefuji, M., Morokuma, S., Yoden, M., Momoda, R., Sonomoto, K., Ogawa, M., Kato, K. & Nakayama, J., Jan 1 2019, (Accepted/In press) In : Gut Microbes.

Research output: Contribution to journalArticle

Bile Acids and Salts
Microbiota
Lactation
Ruminococcus
Lithocholic Acid

The gelatinase biosynthesis-activating pheromone binds and stabilises the FsrB membrane protein in Enterococcus faecalis quorum sensing

Littlewood, S., Tattersall, H., Hughes, C. S., Hussain, R., Ma, P., Harding, S. E., Nakayama, J. & Phillips-Jones, M. K., Jan 1 2019, (Accepted/In press) In : FEBS Letters.

Research output: Contribution to journalArticle

Open Access
Quorum Sensing
Membrane Proteins
Hot Temperature
gelatinase biosynthesis-activating pheromone
Denaturation

The rice storage protein mRNAs as a model system for RNA localization in higher plants

Chou, H. L., Tian, L., Washida, H., Fukuda, M., Kumamaru, T. & Okita, T. W., Jul 1 2019, In : Plant Science. 284, p. 203-211 9 p.

Research output: Contribution to journalReview article

rice protein
storage proteins
multiprotein complexes
RNA
endoplasmic reticulum

The Role of RNA-Binding Protein OsTudor-SN in Post-Transcriptional Regulation of Seed Storage Proteins and Endosperm Development

Chou, H. L., Tian, L., Fukuda, M., Kumamaru, T. & Okita, T. W., Oct 1 2019, In : Plant and Cell Physiology. 60, 10, p. 2193-2205 13 p.

Research output: Contribution to journalArticle

Seed Storage Proteins
Endosperm
RNA-binding proteins
seed storage proteins
RNA-Binding Proteins

Ursolic Acid Isolated from the Leaves of Loquat (Eriobotrya japonica) Inhibited Osteoclast Differentiation through Targeting Exportin 5

Tan, H., Zhao, C., Zhu, Q., Katakura, Y., Tanaka, H., Ohnuki, K. & Shimizu, K., Mar 27 2019, In : Journal of Agricultural and Food Chemistry. 67, 12, p. 3333-3340 8 p.

Research output: Contribution to journalArticle

Eriobotrya
Karyopherins
Eriobotrya japonica
ursolic acid
osteoclasts
2018

A conserved motif is essential for the correct assembly of proglutelins and for their export from the endoplasmic reticulum in rice endosperm

Tian, L., Xing, Y., Fukuda, M., Li, R., Kumamaru, T., Qian, D., Dong, X. & Qu, L. Q., Oct 12 2018, In : Journal of Experimental Botany. 69, 21, p. 5029-5043 15 p.

Research output: Contribution to journalArticle

Endosperm
Endoplasmic Reticulum
endoplasmic reticulum
endosperm
rice
2 Citations (Scopus)

Alcaligenaceae and Chromatiaceae as reliable bioindicators present in palm oil mill effluent final discharge treated by different biotreatment processes

Mohd-Nor, D., Ramli, N., Sharuddin, S. S., Hassan, M. A., Mustapha, N. A., Amran, A., Sakai, K., Shirai, Y. & Maeda, T., Dec 2018, In : Ecological Indicators. 95, p. 468-473 6 p.

Research output: Contribution to journalArticle

Alcaligenaceae
oil mill effluents
Chromatiaceae
bioindicator
mill
1 Citation (Scopus)

Amycolatopsis silviterrae sp. Nov., isolated from forest soil

Jamjan, W., Suriyachadkun, C., Tanasupawat, S., Sakai, K., Tashiro, Y., Okugawa, Y. & Tongpim, S., May 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 5, p. 1455-1460 6 p., 002687.

Research output: Contribution to journalArticle

Amycolatopsis
forest soils
forest soil
Soil
phospholipid
1 Citation (Scopus)

Analysis of ambient pH stress response mediated by iron and copper intake in Schizosaccharomyces pombe

Higuchi, Y., Mori, H., Kubota, T. & Takegawa, K., Jan 1 2018, In : Journal of Bioscience and Bioengineering. 125, 1, p. 92-96 5 p.

Research output: Contribution to journalArticle

Schizosaccharomyces
Copper
Iron
Genes
Yeast
1 Citation (Scopus)

Analysis of differentially expressed genes and the promoters in bovine endometrium throughout estrus cycle and early pregnancy

Musavi, S. A. A., Yamashita, S., Fujihara, T., Masaka, H., Islam, M. R., Kim, S., Gotoh, T., Kawahara, M., Tashiro, K. & Yamauchi, N., Nov 2018, In : Animal Science Journal. 89, 11, p. 1609-1621 13 p.

Research output: Contribution to journalArticle

endometrium
Estrus
Endometrium
estrous cycle
promoter regions
17 Citations (Scopus)

An Exploratory Study on the Anti-inflammatory Effects of Fucoidan in Relation to Quality of Life in Advanced Cancer Patients

Takahashi, H., Kawaguchi, M., Kitamura, K., Narumiya, S., Kawamura, M., Tengan, I., Nishimoto, S., Hanamure, Y., Majima, Y., Tsubura, S., Teruya, K. & Shirahata, S., Jun 1 2018, In : Integrative Cancer Therapies. 17, 2, p. 282-291 10 p.

Research output: Contribution to journalArticle

Anti-Inflammatory Agents
Quality of Life
Neoplasms
Interleukin-1
Eating
6 Citations (Scopus)

Anserine/carnosine supplementation preserves blood flow in the prefrontal brain of elderly people carrying APOE e4

Ding, Q., Tanigawa, K., Kaneko, J., Totsuka, M., Katakura, Y., Imabayashi, E., Matsuda, H. & Hisatsune, T., Jun 1 2018, In : Aging and Disease. 9, 3, p. 334-345 12 p.

Research output: Contribution to journalArticle

Anserine
Carnosine
Brain
Wechsler Scales
Diffusion Tensor Imaging
6 Citations (Scopus)

Antimicrobial biodegradable food packaging impregnated with Bacteriocin 7293 for control of pathogenic bacteria in pangasius fish fillets

Woraprayote, W., Pumpuang, L., Tosukhowong, A., Zendo, T., Sonomoto, K., Benjakul, S. & Visessanguan, W., Mar 1 2018, In : LWT - Food Science and Technology. 89, p. 427-433 7 p.

Research output: Contribution to journalArticle

Pangasius
Food Packaging
fish fillets
Bacteriocins
food packaging

Application of the v-cryoplate method for the cryopreservation of silkworm embryos

Fukumori, H., Tanaka, D. & Banno, Y., Jan 1 2018, In : Journal of Insect Biotechnology and Sericology. 87, 3, p. 89-96 8 p.

Research output: Contribution to journalArticle

Vitrification
Bombyx
Cryopreservation
silkworms
cryopreservation
Reaction Network
Metabolic Network
Metabolites
Metabolic Networks and Pathways
Network Model
1 Citation (Scopus)

A reexamination on the deficiency of riboflavin accumulation in Malpighian tubules in larval translucent mutants of the silkworm, Bombyx mori

Zhang, H., Kiuchi, T., Hirayama, C., Banno, Y., Katsuma, S. & Shimada, T., Oct 1 2018, In : Genetica. 146, 4-5, p. 425-431 7 p.

Research output: Contribution to journalArticle

Riboflavin Deficiency
Malpighian Tubules
Malpighian tubules
Bombyx
Riboflavin
1 Citation (Scopus)

Assessment of genetic diversity in Egyptian barley (Hordeum vulgare L.) genotypes using SSR and SNP markers

Elakhdar, A., Kumamaru, T., Qualset, C. O., Brueggeman, R. S., Amer, K. & Capo-chichi, L., Oct 1 2018, In : Genetic Resources and Crop Evolution. 65, 7, p. 1937-1951 15 p.

Research output: Contribution to journalArticle

Hordeum
barley
Hordeum vulgare
Single Nucleotide Polymorphism
genotype
4 Citations (Scopus)

ATPase activity regulation by leader peptide processing of ABC transporter maturation and secretion protein, NukT, for lantibiotic nukacin ISK-1

Zheng, S., Nagao, J. I., Nishie, M., Zendo, T. & Sonomoto, K., Jan 1 2018, In : Applied Microbiology and Biotechnology. 102, 2, p. 763-772 10 p.

Research output: Contribution to journalArticle

Bacteriocins
ATP-Binding Cassette Transporters
Protein Sorting Signals
Adenosine Triphosphatases
Peptide Hydrolases
2 Citations (Scopus)
aerobic digestion
aerators
Thermaerobacter
aeration
bacterial communities
4 Citations (Scopus)

Azoreductase from alkaliphilic Bacillus sp. AO1 catalyzes indigo reduction

Suzuki, H., Abe, T., Doi, K. & Ohshima, T., Nov 1 2018, In : Applied Microbiology and Biotechnology. 102, 21, p. 9171-9181 11 p.

Research output: Contribution to journalArticle

Indigo Carmine
Bacillus
Polygonum
azoreductase
NAD
4 Citations (Scopus)

Biorefinery-Based Lactic Acid Fermentation: Microbial Production of Pure Monomer Product

Tan, J., Abdel-Rahman, M. A. & Sonomoto, K., Jan 1 2018, Advances in Polymer Science. Springer New York LLC, p. 27-66 40 p. (Advances in Polymer Science; vol. 279).

Research output: Chapter in Book/Report/Conference proceedingChapter

Lactic acid
Fermentation
Lactic Acid
Monomers
Biomass
2 Citations (Scopus)

Catalytic Activity Profile of Polyphosphate Kinase 1 from Myxococcus xanthus

Kamatani, S., Takegawa, K. & Kimura, Y., Apr 1 2018, In : Current Microbiology. 75, 4, p. 379-385 7 p.

Research output: Contribution to journalArticle

Myxococcus xanthus
Adenosine Triphosphate
Adenosine Diphosphate
Polyphosphates
Adenosine Monophosphate

Characterisation of a diazinon-metabolising glutathione S-transferase in the silkworm Bombyx mori by X-ray crystallography and genome editing analysis

Yamamoto, K., Higashiura, A., Hirowatari, A., Yamada, N., Tsubota, T., Sezutsu, H. & Nakagawa, A., Dec 1 2018, In : Scientific reports. 8, 1, 16835.

Research output: Contribution to journalArticle

Diazinon
Bombyx
X Ray Crystallography
Insecticides
Glutathione Transferase
1 Citation (Scopus)

Characterisation of the action mechanism of a Lactococcus-specific bacteriocin, lactococcin Z

Daba, G. M., Ishibashi, N., Gong, X., Taki, H., Yamashiro, K., Lim, Y. Y., Zendo, T. & Sonomoto, K., Nov 1 2018, In : Journal of Bioscience and Bioengineering. 126, 5, p. 603-610 8 p.

Research output: Contribution to journalArticle

Lactococcus
Bacteriocins
Membranes
Carbon
Glucose
1 Citation (Scopus)

Characterization of a half-pipe-like leaf1 mutant that exhibits a curled leaf phenotype

Matsumoto, H., Yasui, Y., Kumamaru, T. & Hirano, H. Y., Jan 1 2018, In : Genes and Genetic Systems. 92, 6, p. 287-291 5 p.

Research output: Contribution to journalArticle

Phenotype
Mesophyll Cells
Angiosperms
Morphogenesis
Observation
3 Citations (Scopus)
Sphingobacterium
Cordyceps
Beauveria
Acetylglucosaminidase
Fucose
6 Citations (Scopus)

Circular and leaderless bacteriocins: Biosynthesis, mode of action, applications, and prospects

Perez, R. H., Zendo, T. & Sonomoto, K., Sep 4 2018, In : Frontiers in Microbiology. 9, SEP, 2085.

Research output: Contribution to journalReview article

Bacteriocins
Peptides
Protein Sorting Signals
Bioengineering
1 Citation (Scopus)

Comparison of the effect of soy and casein-derived peptide administration on tyrosine and catecholamine metabolism in the mouse brain

Hino, Y., Koyanagi, A., Maebuchi, M., Ichinose, T. & Furuya, S., Jan 1 2018, In : Journal of Nutritional Science and Vitaminology. 64, 5, p. 329-334 6 p.

Research output: Contribution to journalArticle

Caseins
Catecholamines
Tyrosine
Cerebral Cortex
Peptides
3 Citations (Scopus)

Delphinidin-3-glucoside suppresses lipid accumulation in HepG2 cells

Harada, G., Onoue, S., Inoue, C., Hanada, S. & Katakura, Y., Jan 1 2018, (Accepted/In press) In : Cytotechnology.

Research output: Contribution to journalArticle

delphinidin
Hep G2 Cells
Palmitic acid
Lipids
Palmitic Acid

Developing anti-virulence chemotherapies by exploiting the diversity of microbial quorum sensing systems

Yousuf, B., Adachi, K. & Nakayama, J., May 30 2018, Biotechnological Applications of Quorum Sensing Inhibitors. Springer Singapore, p. 151-208 58 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

chemotherapy
Quorum Sensing
Chemotherapy
virulence
Virulence
Bombycidae
Telenomus
Scelionidae
Bombyx mori
Taiwan
6 Citations (Scopus)

Diversified transporters and pathways for bacteriocin secretion in gram-positive bacteria

Zheng, S. & Sonomoto, K., May 1 2018, In : Applied Microbiology and Biotechnology. 102, 10, p. 4243-4253 11 p.

Research output: Contribution to journalReview article

Bacteriocins
Secretory Pathway
Gram-Positive Bacteria
Bacteria
Peptides

Draft genome sequence of Bacillus sp. HMA207, a strain that exhibits -D-galactosidase activity to release pyruvylated galactose

Higuchi, Y., Matsufuji, H., Mori, K., Matsunaga, E., Tashiro, K. & Takegawa, K., Sep 13 2018, In : Microbiology Resource Announcements. 7, 10, e01169-18.

Research output: Contribution to journalArticle

Galactosidases
Galactose
Bacillus
Genome
Firearms
1 Citation (Scopus)
Sphingobacterium
Acetylglucosaminidase
Fucose
Oligosaccharides
Genome
2 Citations (Scopus)

Dynamic bacterial community changes in the autothermal thermophilic aerobic digestion process with cell lysis activities, shaking and temperature increase

Cheng, H., Asakura, Y., Kanda, K., Fukui, R., Kawano, Y., Okugawa, Y., Tashiro, Y. & Sakai, K., Aug 2018, In : Journal of Bioscience and Bioengineering. 126, 2, p. 196-204 9 p.

Research output: Contribution to journalArticle

Digestion
Bacteria
Temperature
Assays
Oxygen supply
2 Citations (Scopus)

Early-life Photoperiod Influences Depression-like Behavior, Prepulse Inhibition of the Acoustic Startle Response, and Hippocampal Astrogenesis in Mice

Takai, Y., Kawai, M., Ogo, T., Ichinose, T., Furuya, S., Takaki, N., Tone, Y., Udo, H., Furuse, M. & Yasuo, S., Mar 15 2018, In : Neuroscience. 374, p. 133-143 11 p.

Research output: Contribution to journalArticle

Startle Reflex
Photoperiod
Acoustics
Depression
Dentate Gyrus
16 Citations (Scopus)

Effects of digestate recirculation on a two-stage anaerobic digestion system, particularly focusing on metabolite correlation analysis

Wu, C., Huang, Q., Yu, M., Ren, Y., Wang, Q. & Sakai, K., Mar 1 2018, In : Bioresource Technology. 251, p. 40-48 9 p.

Research output: Contribution to journalArticle

Anaerobic digestion
Methane
Metabolites
Methanogens
metabolite
1 Citation (Scopus)

Enhanced vulnerability to oxidative stress and induction of inflammatory gene expression in 3-phosphoglycerate dehydrogenase-deficient fibroblasts

Hamano, M., Haraguchi, Y., Sayano, T., Zyao, C., Arimoto, Y., Kawano, Y., Moriyasu, K., Udono, M., Katakura, Y., Ogawa, T., Kato, H. & Furuya, S., Jun 2018, In : FEBS Open Bio. 8, 6, p. 914-922 9 p.

Research output: Contribution to journalArticle

Phosphoglycerate Dehydrogenase
Oxidative stress
Fibroblasts
Gene expression
Oxidative Stress
1 Citation (Scopus)
sex linkage
Bombyx
Bombyx mori
silkworms
Ovum
2 Citations (Scopus)

Enzymatic characterization of two epsilon-class glutathione S-transferases of Spodoptera litura

Hirowatari, A., Chen, Z., Mita, K. & Yamamoto, K., Mar 2018, In : Archives of insect biochemistry and physiology. 97, 3, e21443.

Research output: Contribution to journalArticle

Spodoptera
Spodoptera litura
Tobacco
Insecticides
Glutathione Transferase
1 Citation (Scopus)

Evaluation of an S-system root-finding method for estimating parameters in a metabolic reaction model

Iwata, M., Miyawaki-Kuwakado, A., Yoshida, E., Komori, S. & Shiraishi, F., Jul 1 2018, In : Mathematical Biosciences. 301, p. 21-31 11 p.

Research output: Contribution to journalArticle

S-system
Root-finding
Time series
Mathematical models
Evaluation
5 Citations (Scopus)

Evaluation of leader peptides that affect the secretory ability of a multiple bacteriocin transporter, EnkT

Sushida, H., Ishibashi, N., Zendo, T., Wilaipun, P., Leelawatcharamas, V., Nakayama, J. & Sonomoto, K., Jul 2018, In : Journal of Bioscience and Bioengineering. 126, 1, p. 23-29 7 p.

Research output: Contribution to journalArticle

Bacteriocins
Protein Sorting Signals
ATP-Binding Cassette Transporters
Adenosinetriphosphate
Amino acids
29 Citations (Scopus)

Evaluation of probiotic Bacillus aerius B81e isolated from healthy hybrid catfish on growth, disease resistance and innate immunity of Pla-mong Pangasius bocourti

Meidong, R., Khotchanalekha, K., Doolgindachbaporn, S., Nagasawa, T., Nakao, M., Sakai, K. & Tongpim, S., Feb 2018, In : Fish and Shellfish Immunology. 73, p. 1-10 10 p.

Research output: Contribution to journalArticle

Pangasius bocourti
probiotics
disease resistance
Bacillus (bacteria)
Bacilli
2 Citations (Scopus)

Evaluation of the mass transfer rate using computer simulation in a three-dimensional interwoven hollow fiber-type bioartificial liver

Sakiyama, R., Hamada, H., Blau, B., Freyer, N., Zeilinger, K., Schubert, F. & Miki, T., Jan 1 2018, (Accepted/In press) In : Biotechnology letters.

Research output: Contribution to journalArticle

Artificial Liver
Bioreactors
Liver
Computer Simulation
Mass transfer
13 Citations (Scopus)

Free lactic acid production under acidic conditions by lactic acid bacteria strains: challenges and future prospects

Singhvi, M., Zendo, T. & Sonomoto, K., Jul 1 2018, In : Applied Microbiology and Biotechnology. 102, 14, p. 5911-5924 14 p.

Research output: Contribution to journalReview article

Lactic Acid
Bacteria
Fermentation
Acids
Caustics
2 Citations (Scopus)

Genetic diversity and genetic variation in morpho-physiological traits to improve heat tolerance in Spring barley

Sallam, A., Amro, A., EL-Akhdar, A., Dawood, M. F. A., Kumamaru, T. & Stephen Baenziger, P., Dec 1 2018, In : Molecular biology reports. 45, 6, p. 2441-2453 13 p.

Research output: Contribution to journalArticle

Hordeum
Genotype
Hot Temperature
Seedlings
Proline
2 Citations (Scopus)

Genomic sequence of Saccharomyces cerevisiae BAW-6, a yeast strain optimal for brewing barley shochu

Kajiwara, Y., Mori, K., Tashiro, K., Higuchi, Y., Takegawa, K. & Takashita, H., Apr 1 2018, In : Genome Announcements. 6, 14, e00228-18.

Research output: Contribution to journalArticle

Hordeum
Citric Acid
Saccharomyces cerevisiae
Yeasts
Alcohols