Research Output

2006

Visualization of the endocytic pathway in the filamentous fungus Aspergillus oryzae using an EGFP-fused plasma membrane protein

Higuchi, Y., Nakahama, T., Shoji, J. Y., Arioka, M. & Kitamoto, K., Feb 17 2006, In : Biochemical and Biophysical Research Communications. 340, 3, p. 784-791 8 p.

Research output: Contribution to journalArticle

29 Citations (Scopus)

WinBEST-KIT: Windows-based biochemical reaction simulator for metabolic pathways

Sekiguchi, T. & Okamoto, M., Jun 1 2006, In : Journal of bioinformatics and computational biology. 4, 3, p. 621-638 18 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Xylooligosaccharide fermentation with Leuconostoc lactis

Ohara, H., Owaki, M. & Sonomoto, K., May 1 2006, In : Journal of Bioscience and Bioengineering. 101, 5, p. 415-420 6 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)
2005

An agr-like two-component regulatory system in Lactobacillus plantarum is involved in production of a novel cyclic peptide and regulation of adherence

Sturme, M. H. J., Nakayama, J., Molenaar, D., Murakami, Y., Kunugi, R., Fujii, T., Vaughan, E. E., Kleerebezem, M. & De Vos, W. M., Aug 1 2005, In : Journal of bacteriology. 187, 15, p. 5224-5235 12 p.

Research output: Contribution to journalArticle

106 Citations (Scopus)

An approach to further enhance the cellular productivity of exogenous protein hyper-producing Chinese hamster ovary (CHO) cells

Teruya, K., Daimon, Y., Dong, X. Y., Katakura, Y., Miura, T., Ichikawa, A., Fujiki, T., Yamashita, M., Mori, T., Ohashi, H. & Shirahata, S., Jan 1 2005, In : Cytotechnology. 47, 1-3, p. 29-36 8 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

A novel type of immunity protein, NukH, for the lantibiotic nukacin ISK-1 produced by Staphylococcus warneri ISK-1

Aso, Y., Okuda, K. I., Nagao, J. I., Kanemasa, Y., Thi Bich Phuong, N., Koga, H., Shioya, K., Sashihara, T., Nakayama, J. & Sonomoto, K., Sep 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 7, p. 1403-1410 8 p.

Research output: Contribution to journalArticle

42 Citations (Scopus)

Asp578 in LEU4p is one of the key residues for leucine feedback inhibition release in sake yeast

Oba, T., Nomiyama, S., Hirakawa, H., Tashiro, K. & Kuhara, S., Sep 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 7, p. 1270-1273 4 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Association of the GTP-binding protein Gtr1p with Rpc19p, a shared subunit of RNA polymerase I and III in yeast Saccharomyces cerevisiae

Todaka, Y., Wang, Y., Tashiro, K., Nakashima, N., Nishimoto, T. & Sekiguchi, T., Aug 1 2005, In : Genetics. 170, 4, p. 1515-1524 10 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Astroglial expression of ceramide in Alzheimer's disease brains: A role during neuronal apoptosis

Satoi, H., Tomimoto, H., Ohtani, R., Kitano, T., Kondo, T., Watanabe, M., Oka, N., Akiguchi, I., Furuya, S., Hirabayashi, Y. & Okazaki, T., Jan 1 2005, In : Neuroscience. 130, 3, p. 657-666 10 p.

Research output: Contribution to journalArticle

118 Citations (Scopus)

Catalase from the silkworm, Bombyx mori: Gene sequence, distribution, and overexpression

Yamamoto, K., Banno, Y., Fujii, H., Miake, F., Kashige, N. & Aso, Y., Apr 2005, In : Insect Biochemistry and Molecular Biology. 35, 4, p. 277-283 7 p.

Research output: Contribution to journalArticle

40 Citations (Scopus)

Characterization of functional domains of lantibiotic-binding immunity protein, NukH, from Staphylococcus warneri ISK-1

Okuda, K. I., Aso, Y., Nagao, J. I., Shioya, K., Kanemasa, Y., Nakayama, J. & Sonomoto, K., Sep 1 2005, In : FEMS microbiology letters. 250, 1, p. 19-25 7 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Cloning, expression and characterization of theta-class glutathione S-transferase from the silkworm, Bombyx mori

Yamamoto, K., Zhang, P., Miake, F., Kashige, N., Aso, Y., Banno, Y. & Fujii, H., Jul 1 2005, In : Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 141, 3, p. 340-346 7 p.

Research output: Contribution to journalArticle

62 Citations (Scopus)

Comprehensive analysis of wound-inducible genes from the Nicotiana glutinosa leaves using a full-length cDNA microarray

Kouzuma, Y., Tsutsumi, Y., Abe, M., Hayashi, T., Hada, K., Uehashi, K., Shimada, Y., Tashiro, K., Kuhara, S. & Kimura, M., Oct 1 2005, In : Journal of the Faculty of Agriculture, Kyushu University. 50, 2, p. 635-648 14 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 2. Reactor performance

Shiraishi, F., Toyoda, K. & Miyakawa, H., Nov 15 2005, In : Chemical Engineering Journal. 114, 1-3, p. 145-151 7 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Decomposition of gaseous formaldehyde in a photocatalytic reactor with a parallel array of light sources: 1. Fundamental experiment for reactor design

Shiraishi, F., Ohkubo, D., Toyoda, K. & Yamaguchi, S., Nov 15 2005, In : Chemical Engineering Journal. 114, 1-3, p. 153-159 7 p.

Research output: Contribution to journalArticle

43 Citations (Scopus)

Description of complete DNA sequence of two plasmids from the nukacin ISK-1 producer, Staphylococcus warneri ISK-1

Aso, Y., Koga, H., Sashihara, T., Nagao, J. I., Kanemasa, Y., Nakayama, J. & Sonomoto, K., Mar 2005, In : Plasmid. 53, 2, p. 164-178 15 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Detection and normalization of biases present in spotted cDNA microarray data: A composite method addressing dye, intensity-dependent, spatially-dependent, and print-order biases

Uchida, S., Nishida, Y., Satou, K., Muta, S., Tashiro, K. & Kuhara, S., May 18 2005, In : DNA Research. 12, 1, p. 1-7 7 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Development of a computer-aided diagnosis system for a new modality of renal replacement therapy: An integrated approach combining both peritoneal dialysis and hemodialysis

Hamada, H., Namoto, S., Yamada, R., Yamashita, A. C., Ishizaki, M. & Okamoto, M., Dec 1 2005, In : Computers in Biology and Medicine. 35, 10, p. 845-861 17 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Dual antibacterial mechanisms of nisin Z against Gram-positive and Gram-negative bacteria

Kuwano, K., Tanaka, N., Shimizu, T., Nagatoshi, K., Nou, S. & Sonomoto, K., Nov 1 2005, In : International Journal of Antimicrobial Agents. 26, 5, p. 396-402 7 p.

Research output: Contribution to journalArticle

55 Citations (Scopus)

Dual regulatory pathways integrating the RcsC-RcsD-RcsB signalling system control enterohaemorrhagic Escherichia coli pathogenicity

Tobe, T., Ando, H., Ishikawa, H., Abe, H., Tashiro, K., Hayashi, T., Kuhara, S. & Sugimoto, N., Oct 1 2005, In : Molecular Microbiology. 58, 1, p. 320-333 14 p.

Research output: Contribution to journalArticle

48 Citations (Scopus)

Electrolyzed reduced water supplemented with platinum nanoparticles suppresses promotion of two-stage cell transformation

Nishikawa, R., Teruya, K., Katakura, Y., Osada, K., Hamasaki, T., Kashiwagi, T., Komatsu, T., Li, Y., Ye, J., Ichikawa, A., Otsubo, K., Morisawa, S., Xu, Q. & Shirahata, S., Jan 1 2005, In : Cytotechnology. 47, 1-3, p. 97-105 9 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)

Endostatin inhibits lymph node metastasis by a down-regulation of the vascular endothelial growth factor C expression in tumor cells

Fukumoto, S., Morifuji, M., Katakura, Y., Ohishi, M. & Nakamura, S., Jan 1 2005, In : Clinical and Experimental Metastasis. 22, 1, p. 31-38 8 p.

Research output: Contribution to journalArticle

50 Citations (Scopus)

Enzyme-digested fucoidan extracts derived from seaweed Mozuku of Cladosiphon novae-caledoniae kylin inhibit invasion and angiogenesis of tumor cells

Ye, J., Li, Y., Teruya, K., Katakura, Y., Ichikawa, A., Eto, H., Hosoi, M., Hosoi, M., Nishimoto, S. & Shirahata, S., Jan 1 2005, In : Cytotechnology. 47, 1-3, p. 117-126 10 p.

Research output: Contribution to journalArticle

101 Citations (Scopus)

Epistasis underlying female sterility detected in hybrid breakdown in a Japonica-Indica cross of rice (Oryza sativa L.)

Kubo, T. & Yoshimura, A., Jan 1 2005, In : Theoretical and Applied Genetics. 110, 2, p. 346-355 10 p.

Research output: Contribution to journalArticle

49 Citations (Scopus)

Evidence for a novel racemization process of an asparaginyl residue in mouse lysozyme under physiological conditions

Ueno, K., Ueda, T., Sakai, K., Abe, Y., Hamasaki, N., Okamoto, M. & Imoto, T., Jan 1 2005, In : Cellular and Molecular Life Sciences. 62, 2, p. 199-205 7 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Functional impairment of telomerase in sublines derived from human lung adenocarcinoma exposed to mild oxidative stress

Katakura, Y., Yoshizaki, K., Yasuda, T., Tsunematsu, T., Uehara, N., Miura, T., Fujiki, T. & Shirahata, S., Aug 26 2005, In : Biochemical and Biophysical Research Communications. 334, 2, p. 450-459 10 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Genetic variation of glutelin acidic subunit polypeptides in Bangladesh rice genetic resources

Jahan, M. S., Uemura, Y., Kumamaru, T., Hamid, A. & Satoh, H., Dec 1 2005, In : Genetic Resources and Crop Evolution. 52, 8, p. 977-987 11 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Global analysis of altered gene expressions during the process of esophageal squamous cell carcinogenesis in the rat: A study combined with a laser microdissection and a cDNA microarray

Nishida, K., Mine, S., Utsunomiya, T., Inoue, H., Okamoto, M., Udagawa, H., Hanai, T. & Mori, M., Jan 15 2005, In : Cancer Research. 65, 2, p. 401-409 9 p.

Research output: Contribution to journalArticle

37 Citations (Scopus)

Glucan-binding activity of silkworm 30-kDa apolipoprotein and its involvement in defense against fungal infection

Ujita, M., Katsuno, Y., Kawachi, I., Ueno, Y., Banno, Y., Fujii, H. & Hara, A., Jun 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 6, p. 1178-1185 8 p.

Research output: Contribution to journalArticle

35 Citations (Scopus)

"Gridifying" an evolutionary algorithm for inference of genetic networks using the improved GOGA framework and its performance evaluation on OBI grid

Imade, H., Mizuguchi, N., Ono, I., Ono, N. & Okamoto, M., Oct 17 2005, In : Lecture Notes in Bioinformatics (Subseries of Lecture Notes in Computer Science). 3370, p. 171-186 16 p.

Research output: Contribution to journalConference article

9 Citations (Scopus)

High production of acetone-butanol-ethanol with high cell density culture by cell-recycling and bleeding

Tashiro, Y., Takeda, K., Kobayashi, G. & Sonomoto, K., Nov 4 2005, In : Journal of Biotechnology. 120, 2, p. 197-206 10 p.

Research output: Contribution to journalArticle

106 Citations (Scopus)

Identification and production of a bacteriocin from Enterococcus mundtii QU 2 isolated from soybean

Zendo, T., Eungruttanagorn, N., Fujioka, S., Tashiro, Y., Nomura, K., Sera, Y., Kobayashi, G., Nakayama, J., Ishizaki, A. & Sonomoto, K., Nov 8 2005, In : Journal of Applied Microbiology. 99, 5, p. 1181-1190 10 p.

Research output: Contribution to journalArticle

64 Citations (Scopus)

Integration of molecular and classical linkage groups of the silkworm, Bombyx mori (n = 28)

Yasukochi, Y., Banno, Y., Yamamoto, K., Goldsmith, M. R. & Fujii, H., Aug 1 2005, In : Genome. 48, 4, p. 626-629 4 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

Lanthionine introduction into nukacin ISK-1 prepeptide by co-expression with modification enzyme NukM in Escherichia coli

Nagao, J. I., Harada, Y., Shioya, K., Aso, Y., Zendo, T., Nakayama, J. & Sonomoto, K., Oct 21 2005, In : Biochemical and Biophysical Research Communications. 336, 2, p. 507-513 7 p.

Research output: Contribution to journalArticle

44 Citations (Scopus)

Localization and interaction of the biosynthetic proteins for the lantibiotic, nukacin ISK-1

Nagao, J. I., Aso, Y., Sashihara, T., Shioya, K., Adachi, A., Nakayama, J. & Sonomoto, K., Sep 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 7, p. 1341-1347 7 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Molecular and biochemical characterization of manganese-containing superoxide dismutase from the silkworm, Bombyx mori

Yamamoto, K., Zhang, P., He, N., Wang, Y., Aso, Y., Banno, Y. & Fujii, H., Dec 1 2005, In : Comparative Biochemistry and Physiology - B Biochemistry and Molecular Biology. 142, 4, p. 403-409 7 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Molecular monitoring of the developmental bacterial community in the gastrointestinal tract of Japanese infants

Songjinda, P., Nakayama, J., Kuroki, Y., Tanaka, S., Fukuda, S., Kiyohara, C., Yamamoto, T., Izuchi, K., Shirakawa, T. & Sonomoto, K., Mar 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 3, p. 638-641 4 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Neuroglial activation in Niemann-Pick Type C mice is suppressed by intracerebral transplantation of bone marrow-derived mesenchymal stem cells

Bae, J. S., Furuya, S., Ahn, S. J., Yi, S. J., Hirabayashi, Y. & Jin, H. K., Jun 24 2005, In : Neuroscience Letters. 381, 3, p. 234-236 3 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Partial deletions of the W chromosome due to reciprocal translocation in the silkworm Bombyx mori

Abe, H., Seki, M., Ohbayashi, F., Tanaka, N., Yamashita, J., Fujii, T., Yokoyama, T., Takahashi, M., Banno, Y., Sahara, K., Yoshido, A., Ihara, J., Yasukochi, Y., Mita, K., Ajimural, M., Suzuki, M. G., Oshiki, T. & Shimada, T., Aug 1 2005, In : Insect Molecular Biology. 14, 4, p. 339-352 14 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Proteomic studies of isoforms of the P25 component of Bombyx mori fibroin

Zhang, P., Yamamoto, K., Aso, Y., Banno, Y., Sakano, D., Wang, Y. & Fujii, H., Dec 8 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 11, p. 2086-2093 8 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Reconstitution and function of Tetragenococcus halophila chaperonin 60 tetradecamer

Tosukhowong, A., Nakayama, J., Mizunoe, Y., Sugimoto, S., Fukuda, D. & Sonomoto, K., Jan 2005, In : Journal of Bioscience and Bioengineering. 99, 1, p. 30-37 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Release from Regulations of β-Glucosidase I Production in Bifidobacterium breve 203 by Acclimation to Cellobiose

Sakai, K., Sadamitsu, Y., Sakurai, M. & Sakai, K., Jan 1 2005, In : NIHON SHOKUHIN KOUGAKUKAISHI (Japan Journal of Food Engineering). 6, 3, p. 205-208 4 p.

Research output: Contribution to journalArticle

Structure analysis of complex carbohydrate exhibiting IL-12 inducing activity derived from mineral water in natural leaf soil

Kato, Y., Ohta, M., Kamei, K., Wakita, H., Kawahara, T., Yamano, Y., Hamasaki, T., Teruya, K., Osada, K., Nishikawa, R., Noguchi, K. & Shirahata, S., May 1 2005, In : bunseki kagaku. 54, 5, p. 391-397 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Superoxide dismutase from the silkworm, Bombyx mori: Sequence, distribution, and overexpression

Yamamoto, K., Zhang, P., Banno, Y., Fujii, H., Miake, F., Kashige, N. & Aso, Y., Mar 1 2005, In : Bioscience, Biotechnology and Biochemistry. 69, 3, p. 507-514 8 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

The role of mRNA and protein sorting in seed storage protein synthesis, transport, and deposition

Crofts, A. J., Washida, H., Okita, T. W., Satoh, M., Ogawa, M., Kumamaru, T. & Satoh, H., Dec 1 2005, In : Biochemistry and Cell Biology. 83, 6, p. 728-737 10 p.

Research output: Contribution to journalArticle

39 Citations (Scopus)

Utilization of excess sludge by acetone-butanol-ethanol fermentation employing Clostridium saccharoperbutylacetonicum N1-4 (ATCC 13564)

Kobayashi, G., Eto, K., Tashiro, Y., Okubo, K., Sonomoto, K. & Ishizaki, A., Jan 1 2005, In : Journal of Bioscience and Bioengineering. 99, 5, p. 517-519 3 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)
2004

A carotenoid-binding protein (CBP) plays a crucial role in cocoon pigmentation of silkworm (Bombyx mori) larvae

Tabunoki, H., Higurashi, S., Ninagi, O., Fujii, H., Banno, Y., Nozaki, M., Kitajima, M., Miura, N., Atsumi, S., Tsuchida, K., Maekawa, H. & Sato, R., Jun 4 2004, In : FEBS Letters. 567, 2-3, p. 175-178 4 p.

Research output: Contribution to journalArticle

68 Citations (Scopus)

A grid-oriented genetic algorithm framework for bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., Jan 1 2004, In : New Generation Computing. 22, 2, p. 177-186 10 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

Analysis of artificial and spontaneous parthenogenetic development in mosaic mutations and the parthenogenetic strain of bombyx mori

Kusakabe, T., Kido, K., Kita, K., Banno, Y., Mon, H., Kawaguchi, Y. & Koga, K., Jan 1 2004, In : Invertebrate Reproduction and Development. 45, 2, p. 101-108 8 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

An evolutionary algorithm taking account of mutual interactions among substances for inference of genetic networks

Ono, I., Ono, N., Seike, Y., Nakatsui, M., Morishita, R. & Okamoto, M., 2004, Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004. Vol. 2. p. 2060-2067 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

7 Citations (Scopus)