Research Output 1979 2020

2018

Greener L-lactic acid production through in situ extractive fermentation by an acid-tolerant Lactobacillus strain

Singhvi, M., Zendo, T., Gokhale, D. & Sonomoto, K., Aug 1 2018, In : Applied Microbiology and Biotechnology. 102, 15, p. 6425-6435 11 p.

Research output: Contribution to journalArticle

Lactobacillus
Fermentation
Lactic Acid
Acids
Proton-Translocating ATPases
19 Citations (Scopus)

Gut dysbiosis associated with hepatitis C virus infection

Inoue, T., Nakayama, J., Moriya, K., Kawaratani, H., Momoda, R., Ito, K., Iio, E., Nojiri, S., Fujiwara, K., Yoneda, M., Yoshiji, H. & Tanaka, Y., Jan 1 2018, In : Clinical Infectious Diseases. 67, 6, p. 869-877 9 p.

Research output: Contribution to journalArticle

Dysbiosis
Chronic Hepatitis C
Virus Diseases
Hepacivirus
Liver Cirrhosis
Heteropoda
Pheretima
Oligochaeta
intestinal microorganisms
earthworms
2 Citations (Scopus)

Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose

Higuchi, Y., Matsufuji, H., Tanuma, M., Arakawa, T., Mori, K., Yamada, C., Shofia, R., Matsunaga, E., Tashiro, K., Fushinobu, S. & Takegawa, K., Dec 1 2018, In : Scientific reports. 8, 1, 12013.

Research output: Contribution to journalArticle

Galactosidases
Galactose
Oligosaccharides
Bacillus
Enzymes
5 Citations (Scopus)

Impact of Land-use Change on Vertical Soil Bacterial Communities in Sabah

Tin, H. S., Palaniveloo, K., Anilik, J., Vickneswaran, M., Tashiro, Y., Vairappan, C. S. & Sakai, K., Feb 1 2018, In : Microbial Ecology. 75, 2, p. 459-467 9 p.

Research output: Contribution to journalArticle

soil bacteria
Borneo
land use change
plantations
bacterial communities
4 Citations (Scopus)

Impairment of Lhca4, a subunit of LHCI, causes high accumulation of chlorophyll and the stay-green phenotype in rice

Yamatani, H., Kohzuma, K., Nakano, M., Takami, T., Kato, Y., Hayashi, Y., Monden, Y., Okumoto, Y., Abe, T., Kumamaru, T., Tanaka, A., Sakamoto, W. & Kusaba, M., Feb 23 2018, In : Journal of Experimental Botany. 69, 5, p. 1027-1035 9 p.

Research output: Contribution to journalArticle

light harvesting complex
Chlorophyll
Phenotype
chlorophyll
Light

Innovative green chemical production by novel egyptian aquatic bacterial isolates

Elkhateeb, W. A., Hamdan, A. M., Zendo, T., Tashiro, Y. & Sonomoto, K., Jan 1 2018, In : Journal of the Faculty of Agriculture, Kyushu University. 63, 2, p. 331-337 7 p.

Research output: Contribution to journalArticle

lactic fermentation
Egypt
Mediterranean Sea
lactic acid
Lactic Acid
5 Citations (Scopus)

Mechanisms of carnosine-induced activation of neuronal cells

Yamashita, S., Sato, M., Matsumoto, T., Kadooka, K., Hasegawa, T., Fujimura, T. & Katakura, Y., Jan 1 2018, In : Bioscience, Biotechnology and Biochemistry. 82, 4, p. 683-688 6 p.

Research output: Contribution to journalArticle

Carnosine
Chemical activation
Brain
Functional Food
Aptitude
2 Citations (Scopus)

Metabolic dependent and independent pH-drop shuts down VirSR quorum sensing in Clostridium perfringens

Adachi, K., Ohtani, K., Kawano, M., Singh, R. P., Yousuf, B., Sonomoto, K., Shimizu, T. & Nakayama, J., May 2018, In : Journal of Bioscience and Bioengineering. 125, 5, p. 525-531 7 p.

Research output: Contribution to journalArticle

Quorum Sensing
Clostridium
Clostridium perfringens
Quenching
Genes

Mushroom extract inhibits ultraviolet B-induced cellular senescence in human keratinocytes

Chong, Z., Matsuo, H., Kuroda, M., Yamashita, S., Parajuli, G. P., Manandhar, H. K., Shimizu, K. & Katakura, Y., Jun 1 2018, In : Cytotechnology. 70, 3, p. 1001-1008 8 p.

Research output: Contribution to journalArticle

Cell Aging
Agaricales
Keratinocytes
Galactosidases
Irradiation

Mutation in fission yeast phosphatidylinositol 4-kinase Pik1 is synthetically lethal with defect in telomere protection protein Pot1

Sugihara, A., Nguyen, L. C., Shamim, H. M., Iida, T., Nakase, M., Takegawa, K., Senda, M., Jida, S. & Ueno, M., Feb 19 2018, In : Biochemical and Biophysical Research Communications. 496, 4, p. 1284-1290 7 p.

Research output: Contribution to journalArticle

1-Phosphatidylinositol 4-Kinase
Schizosaccharomyces
Telomere
Chromosomes
Yeast
3 Citations (Scopus)

Mutations responsible for alcohol tolerance in the mutant of Synechococcus elongatus PCC 7942 (SY1043) obtained by single-cell screening system

Hirokawa, Y., Kanesaki, Y., Arai, S., Saruta, F., Hayashihara, K., Murakami, A., Shimizu, K., Honda, H., Yoshikawa, H. & Hanai, T., May 2018, In : Journal of Bioscience and Bioengineering. 125, 5, p. 572-577 6 p.

Research output: Contribution to journalArticle

Synechococcus
Screening
Alcohols
Mutation
2-Propanol
5 Citations (Scopus)

Novel biobutanol fermentation at a large extractant volume ratio using immobilized Clostridium saccharoperbutylacetonicum N1-4

Darmayanti, R. F., Tashiro, Y., Noguchi, T., Gao, M., Sakai, K. & Sonomoto, K., Dec 1 2018, In : Journal of Bioscience and Bioengineering. 126, 6, p. 750-757 8 p.

Research output: Contribution to journalArticle

Clostridium
Butanols
Butenes
Fermentation
Acetone
3 Citations (Scopus)

Optimization of a pH-shift control strategy for producing monoclonal antibodies in Chinese hamster ovary cell cultures using a pH-dependent dynamic model

Hogiri, T., Tamashima, H., Nishizawa, A. & Okamoto, M., Feb 2018, In : Journal of Bioscience and Bioengineering. 125, 2, p. 245-250 6 p.

Research output: Contribution to journalArticle

Monoclonal antibodies
Cricetulus
Cell culture
Ovary
Dynamic models
3 Citations (Scopus)

Pig testis extract augments adiponectin expression and secretion through the peroxisome proliferator-activated receptor signaling pathway in 3T3-L1 adipocytes

Kadooka, K., Sato, M., Matsumoto, T., Kuhara, S., Katakura, Y. & Fujimura, T., Jun 1 2018, In : Cytotechnology. 70, 3, p. 983-992 10 p.

Research output: Contribution to journalArticle

Peroxisome Proliferator-Activated Receptors
Adiponectin
Adipocytes
Testis
Swine

Proteomic analysis of larval integument in a dominant obese translucent (OBS) silkworm mutant

Wang, L., Dong, Z., Wang, J., Yin, Y., Liu, H., Hu, W., Peng, Z., Liu, C., Li, M., Banno, Y., Shimada, T., Xia, Q. & Zhao, P., Jan 1 2018, In : Journal of Insect Science. 18, 6, 4.

Research output: Contribution to journalArticle

silkworms
integument
proteomics
mutants
proteins
1 Citation (Scopus)

Rapid semi-quantification of triacylglycerols, phosphatidylcholines, and free fatty acids in the rice bran of one grain

Nagamoto, J., Sawazaki, A., Miyago, M., Shirouchi, B., Sakata, M., TONG, L. T., Kumamaru, T. & Sato, M., May 2018, In : Journal of Integrative Agriculture. 17, 5, p. 977-981 5 p.

Research output: Contribution to journalArticle

rice bran
Phosphatidylcholines
Nonesterified Fatty Acids
phosphatidylcholines
free fatty acids

Recognizability of heterologous co-chaperones with Streptococcus intermedius DnaK and Escherichia coli DnaK

Tomoyasu, T., Tsuruno, K., Tanatsugu, R., Miyazaki, A., Kondo, H., Tabata, A., Whiley, R. A., Sonomoto, K. & Nagamune, H., Nov 1 2018, In : MICROBIOLOGY and IMMUNOLOGY. 62, 11, p. 681-693 13 p.

Research output: Contribution to journalArticle

Streptococcus intermedius
Escherichia coli
Luciferases
Adenosine Triphosphatases
Gram-Negative Bacteria
6 Citations (Scopus)

Rna-binding protein rbp-p is required for glutelin and prolamine mrna localization in rice endosperm cells[open]

Tian, L., Chou, H. L., Zhang, L., Hwang, S. K., Starkenburg, S. R., Doroshenk, K. A., Kumamaru, T. & Okita, T. W., Jan 1 2018, In : Plant Cell. 30, 10, p. 2529-2552 24 p.

Research output: Contribution to journalArticle

Phenylpropanolamine
Endosperm
glutelins
RNA-Binding Proteins
Glutens
2 Citations (Scopus)

Selective sets of mRNAs localize to extracellular paramural bodies in a rice glup6 mutant

Yang, Y., Chou, H. L., Crofts, A. J., Zhang, L., Tian, L., Washida, H., Fukuda, M., Kumamaru, T., Oviedo, O. J., Starkenburg, S. R. & Okita, T. W., Oct 12 2018, In : Journal of Experimental Botany. 69, 21, p. 5045-5058 14 p.

Research output: Contribution to journalArticle

RNA
rice
mutants
Messenger RNA
glutelins
7 Citations (Scopus)

Semi-hydrolysis with low enzyme loading leads to highly effective butanol fermentation

Zhao, T., Tashiro, Y., Zheng, J., Sakai, K. & Sonomoto, K., Sep 2018, In : Bioresource Technology. 264, p. 335-342 8 p.

Research output: Contribution to journalArticle

Butanols
Butenes
Fermentation
fermentation
hydrolysis
14 Citations (Scopus)

Serine Synthesis via PHGDH Is Essential for Heme Production in Endothelial Cells

Vandekeere, S., Dubois, C., Kalucka, J., Sullivan, M. R., García-Caballero, M., Goveia, J., Chen, R., Diehl, F. F., Bar-Lev, L., Souffreau, J., Pircher, A., Kumar, S., Vinckier, S., Hirabayashi, Y., Furuya, S., Schoonjans, L., Eelen, G., Ghesquière, B., Keshet, E., Li, X. & 3 others, Vander Heiden, M. G., Dewerchin, M. & Carmeliet, P., Jul 12 2018, In : Cell Metabolism. 28, 4, p. in press

Research output: Contribution to journalArticle

Heme
Serine
Endothelial Cells
Respiration
Homeostasis
7 Citations (Scopus)

Shift of low to high nucleic acid bacteria as a potential bioindicator for the screening of anthropogenic effects in a receiving river due to palm oil mill effluent final discharge

Sharuddin, S. S., Ramli, N., Mohd-Nor, D., Hassan, M. A., Maeda, T., Shirai, Y., Sakai, K. & Tashiro, Y., Feb 2018, In : Ecological Indicators. 85, p. 79-84 6 p.

Research output: Contribution to journalArticle

oil mill effluents
nucleic acid
bioindicator
anthropogenic effect
nucleic acids
4 Citations (Scopus)

Starch synthase IIa-deficient mutant rice line produces endosperm starch with lower gelatinization temperature than japonica rice cultivars

Miura, S., Crofts, N., Saito, Y., Hosaka, Y., Oitome, N. F., Watanabe, T., Kumamaru, T. & Fujita, N., May 15 2018, In : Frontiers in Plant Science. 9, 645.

Research output: Contribution to journalArticle

starch synthase
endosperm
starch
amylopectin
rice
7 Citations (Scopus)

Stimulation of methane yield rate from food waste by aerobic pre-treatment

Wu, C., Yu, M., Huang, Q., Ma, H., Gao, M., Wang, Q. & Sakai, K., Aug 2018, In : Bioresource Technology. 261, p. 279-287 9 p.

Research output: Contribution to journalArticle

Methane
methane
food
Anaerobic digestion
Biological materials

Studies on highly functional fermented-products made from unutilized biomass resources by thermophilic bacteria

Miyamoto, H., Miyamoto, H., Tashiro, Y., Sakai, K. & Kodama, H., Jan 1 2018, In : Seibutsu-kogaku Kaishi. 96, 2, p. 56-63 8 p.

Research output: Contribution to journalArticle

thermophilic bacteria
Biomass
Bacteria
biomass

Substrate specificity of Nudix hydrolases from Myxococcus xanthus

Kimura, Y., Yamamoto, Y., Kajimoto, S., Sakai, A. & Takegawa, K., Jan 1 2018, In : Journal of General and Applied Microbiology. 64, 2, p. 94-98 5 p.

Research output: Contribution to journalComment/debate

Myxococcus xanthus
Substrate Specificity
nudix hydrolases
11 Citations (Scopus)

The habu genome reveals accelerated evolution of venom protein genes

Shibata, H., Chijiwa, T., Oda-Ueda, N., Nakamura, H., Yamaguchi, K., Hattori, S., Matsubara, K., Matsuda, Y., Yamashita, A., Isomoto, A., Mori, K., Tashiro, K., Kuhara, S., Yamasaki, S., Fujie, M., Goto, H., Koyanagi, R., Takeuchi, T., Fukumaki, Y., Ohno, M. & 4 others, Shoguchi, E., Hisata, K., Satoh, N. & Ogawa, T., Dec 1 2018, In : Scientific reports. 8, 1, 11300.

Research output: Contribution to journalArticle

venoms
snakes
genome
genes
proteins
2 Citations (Scopus)

The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states

Fujinami, D., -Mahin, A. A., Elsayed, K. M., Islam, M. R., Nagao, J. I., Roy, U., Momin, S., Zendo, T., Kohda, D. & Sonomoto, K., Dec 1 2018, In : Communications Biology. 1, 1, 150.

Research output: Contribution to journalArticle

Open Access
Bacteriocins
bacteriocins
lipids
hydrogen bonding
pyrophosphates
2 Citations (Scopus)
Bombyx
Biosynthesis
molybdenum
paralysis
Bombyx mori
7 Citations (Scopus)

Urban diets linked to gut microbiome and metabolome alterations in children: A comparative cross-sectional study in Thailand

Kisuse, J., La-ongkham, O., Nakphaichit, M., Therdtatha, P., Momoda, R., Tanaka, M., Fukuda, S., Popluechai, S., Kespechara, K., Sonomoto, K., Lee, Y. K., Nitisinprasert, S. & Nakayama, J., Jun 22 2018, In : Frontiers in Microbiology. 9, JUN, 1345.

Research output: Contribution to journalArticle

Metabolome
Thailand
Cross-Sectional Studies
Diet
Vegetables

Using metabolome data for mathematical modeling of plant metabolic systems

Hirai, M. Y. & Shiraishi, F., Dec 1 2018, In : Current Opinion in Biotechnology. 54, p. 138-144 7 p.

Research output: Contribution to journalReview article

Metabolome
Metabolism
Metabolic Engineering
Metabolomics
Metabolic engineering
2017

16S rRNA Metagenomics of Asian Gut Microbiota

Kisuse, J. & Nakayama, J., Sep 1 2017, Understanding Host-Microbiome Interactions - An Omics Approach: Omics of Host-Microbiome Association. Springer Singapore, p. 71-81 11 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Metagenomics
Microbiota
choloylglycine hydrolase
Prevotella
Bacteroides
8 Citations (Scopus)

A better UV light and TiO2-PET sheet arrangement for enhancing photocatalytic decomposition of volatile organic compounds

Shiraishi, F., Maruoka, D. & Tanoue, Y., Mar 24 2017, In : Separation and Purification Technology. 175, p. 185-193 9 p.

Research output: Contribution to journalArticle

Volatile Organic Compounds
Volatile organic compounds
Ultraviolet radiation
Decomposition
Ultraviolet lamps
4 Citations (Scopus)

Alcohol-tolerant mutants of cyanobacterium Synechococcus elongatus PCC 7942 obtained by single-cell mutant screening system

Arai, S., Hayashihara, K., Kanamoto, Y., Shimizu, K., Hirokawa, Y., Hanai, T., Murakami, A. & Honda, H., Aug 2017, In : Biotechnology and Bioengineering. 114, 8, p. 1771-1778 8 p.

Research output: Contribution to journalArticle

Synechococcus
2-Propanol
Cyanobacteria
Screening
Alcohols
3 Citations (Scopus)

Alteration of development and gene expression induced by in ovo-nanoinjection of 3-hydroxybenzo[c]phenanthrene into Japanese medaka (Oryzias latipes) embryos

Chen, K., Tsutsumi, Y., Yoshitake, S., Qiu, X., Xu, H., Hashiguchi, Y., Honda, M., Tashiro, K., Nakayama, K., Hano, T., Suzuki, N., Hayakawa, K., Shimasaki, Y. & Oshima, Y., Jan 1 2017, In : Aquatic Toxicology. 182, p. 194-204 11 p.

Research output: Contribution to journalArticle

Oryzias
Oryzias latipes
phenanthrene
gene expression
embryo
3 Citations (Scopus)

Analysis of an acyl-CoA binding protein in Aspergillus oryzae that undergoes unconventional secretion

Kwon, H. S., Kawaguchi, K., Kikuma, T., Takegawa, K., Kitamoto, K. & Higuchi, Y., Nov 4 2017, In : Biochemical and Biophysical Research Communications. 493, 1, p. 481-486 6 p.

Research output: Contribution to journalArticle

Diazepam Binding Inhibitor
Aspergillus oryzae
Aspergillus
Yeast
Saccharomyces cerevisiae
13 Citations (Scopus)

A novel probiotic Bacillus siamensis B44v isolated from Thai pickled vegetables (Phak-dong) for potential use as a feed supplement in aquaculture

Meidong, R., Doolgindachbaporn, S., Jamjan, W., Sakai, K., Tashiro, Y., Okugawa, Y. & Tongpim, S., Jan 1 2017, In : Journal of General and Applied Microbiology. 63, 4, p. 246-253 8 p.

Research output: Contribution to journalArticle

Aquaculture
Probiotics
Vegetables
Bacillus
Fishes
11 Citations (Scopus)

Anserine/carnosine supplementation suppresses the expression of the inflammatory chemokine CCL24 in peripheral blood mononuclear cells from elderly people

Katakura, Y., Totsuka, M., Imabayashi, E., Matsuda, H. & Hisatsune, T., Nov 2017, In : Nutrients. 9, 11, 1199.

Research output: Contribution to journalArticle

Chemokine CCL24
Anserine
anserine
Carnosine
carnosine
2 Citations (Scopus)
Multilocus Sequence Typing
Enterobacter
Bombyx
silkworms
Hafnia
2 Citations (Scopus)

Asian gut microbiome

Nakayama, J., Zhang, H. & Lee, Y. K., Jun 30 2017, In : Science Bulletin. 62, 12, p. 816-817 2 p.

Research output: Contribution to journalComment/debate

9 Citations (Scopus)

Bacterial community shift for monitoring the co-composting of oil palm empty fruit bunch and palm oil mill effluent anaerobic sludge

Zainudin, M. H. M., Ramli, N., Hassan, M. A., Shirai, Y., Tashiro, K., Sakai, K. & Tashiro, Y., Jun 1 2017, In : Journal of Industrial Microbiology and Biotechnology. 44, 6, p. 869-877 9 p.

Research output: Contribution to journalArticle

Composting
Palm oil
Sewage sludge
Sewage
Fruits
6 Citations (Scopus)

Bacterial community shift revealed Chromatiaceae and Alcaligenaceae as potential bioindicators in the receiving river due to palm oil mill effluent final discharge

Sharuddin, S. S., Ramli, N., Hassan, M. A., Mustapha, N. A., Amran, A., Mohd-Nor, D., Sakai, K., Tashiro, Y., Shirai, Y. & Maeda, T., Nov 2017, In : Ecological Indicators. 82, p. 526-529 4 p.

Research output: Contribution to journalArticle

Alcaligenaceae
oil mill effluents
Chromatiaceae
bioindicator
bacterial communities

Bioconversion of water-hyacinth to nutritionally enriched animal feed by solid state fermentation using Pleurotus sajor-caju

Shamim, H. M., Abdel-Rahman, M. A., Hussain, M. S., Islam, M. R. & Abdullah-Al-Mahin, M. C., Jan 1 2017, In : Journal of Microbiology, Biotechnology and Food Sciences. 6, 5, p. 1165-1169 5 p.

Research output: Contribution to journalArticle

Eichhornia
Pleurotus sajor-caju
Pleurotus
Eichhornia crassipes
solid state fermentation
10 Citations (Scopus)

Bm-muted, orthologous to mouse muted and encoding a subunit of the BLOC-1 complex, is responsible for the otm translucent mutation of the silkworm Bombyx mori

Zhang, H., Kiuchi, T., Wang, L., Kawamoto, M., Suzuki, Y., Sugano, S., Banno, Y., Katsuma, S. & Shimada, T., Sep 20 2017, In : Gene. 629, p. 92-100 9 p.

Research output: Contribution to journalArticle

Bombyx
Lysosomes
Organelles
Mutation
Fat Body
4 Citations (Scopus)

Carnosine activates the CREB pathway in Caco-2 cells

Fujii, K., Abe, K., Kadooka, K., Matsumoto, T. & Katakura, Y., Jun 1 2017, In : Cytotechnology. 69, 3, p. 523-527 5 p.

Research output: Contribution to journalArticle

Carnosine
Caco-2 Cells
Brain
Carrier Proteins
Chemical activation
5 Citations (Scopus)

Characterization of a PA14 domain-containing galactofuranose-specific β-D-galactofuranosidase from Streptomyces sp.

Matsunaga, E., Higuchi, Y., Mori, K., Yairo, N., Toyota, S., Oka, T., Tashiro, K. & Takegawa, K., Jan 1 2017, In : Bioscience, Biotechnology and Biochemistry. 81, 7, p. 1314-1319 6 p.

Research output: Contribution to journalArticle

Streptomyces
Genes
Polysaccharides
Glycoconjugates
Aspergillus fumigatus
7 Citations (Scopus)

Characterization of Recombinant Thermococcus kodakaraensis (KOD) DNA Polymerases Produced Using Silkworm-Baculovirus Expression Vector System

Yamashita, M., Xu, J., Morokuma, D., Hirata, K., Hino, M., Mon, H., Takahashi, M., Hamdan, S. M., Sakashita, K., Iiyama, K., Banno, Y., Kusakabe, T. & Lee, J. M., Jun 1 2017, In : Molecular Biotechnology. 59, 6, p. 221-233 13 p.

Research output: Contribution to journalArticle

Thermococcus
Bombyx
Baculoviridae
DNA-Directed DNA Polymerase
Larva

Complete genome sequence of Thermus thermophilus TMY, isolated from a geothermal power plant

Fujino, Y., Nagayoshi, Y., Ohshima, T., Ogata, S. & Doi, K., Jan 1 2017, In : Genome Announcements. 5, 5, e01596-16.

Research output: Contribution to journalArticle

Thermus thermophilus
Power Plants
Genome
Silicon Dioxide
Genes
8 Citations (Scopus)
Dihydroxyacetone Phosphate
Synechococcus
Photosynthesis
Cyanobacteria
Lactic Acid