Research Output

2004

An integrated comprehensive workbench for inferring genetic networks: VoyaGene

Maki, Y., Takahashi, Y., Arikawa, Y., Watanabe, S., Aoshima, K., Eguchi, Y., Ueda, T., Aburatani, S., Kuhara, S. & Okamoto, M., Sep 1 2004, In : Journal of bioinformatics and computational biology. 2, 3, p. 533-550 18 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)
8 Citations (Scopus)

A preprocessing method for inferring genetic interaction from gene expression data using Boolean algorithm

Hakamada, K., Hanai, T., Honda, H. & Kobayashi, T., Dec 2004, In : Journal of Bioscience and Bioengineering. 98, 6, p. 457-463 7 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Characterization of a gene cluster of Staphylococcus warneri ISK-1 encoding the biosynthesis of and immunity to the lantibiotic, nukacin ISK-1

Aso, Y., Sashihara, T., Nagao, J. I., Kanemasa, Y., Koga, H., Hashimoto, T., Higuchi, T., Adachi, A., Nomiyama, H., Ishizaki, A., Nakayama, J. & Sonomoto, K., Aug 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 8, p. 1663-1671 9 p.

Research output: Contribution to journalArticle

28 Citations (Scopus)

Characterization of Schizosaccharomyces pombe mutants defective in vacuolar acidification and protein sorting

Iwaki, T., Goa, T., Tanaka, N. & Takegawa, K., Mar 1 2004, In : Molecular Genetics and Genomics. 271, 2, p. 197-207 11 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)

Characterization of the carotenoid-binding protein of the Y-gene dominant mutants of Bombyx mori

Tsuchida, K., Jouni, Z. E., Gardetto, J., Kobayashi, Y., Tabunoki, H., Azuma, M., Sugiyama, H., Takada, N., Maekawa, H., Banno, Y., Fujii, H., Iwano, H. & Wells, M. A., Apr 1 2004, In : Journal of insect physiology. 50, 4, p. 363-372 10 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., Mar 1 2004, In : Journal of bioinformatics and computational biology. 2, 1, p. 77-98 22 p.

Research output: Contribution to journalArticle

75 Citations (Scopus)

Ehd1, a B-type response regulator in rice, confers short-day promotion of flowering and controls FT-like gene expression independently of Hd1

Doi, K., Izawa, T., Fuse, T., Yamanouchi, U., Kubo, T., Shimatani, Z., Yano, M. & Yoshimura, A., Apr 15 2004, In : Genes and Development. 18, 8, p. 926-936 11 p.

Research output: Contribution to journalArticle

501 Citations (Scopus)

Heterogeneity of dnaB Locus of Mycobacterium avium-intracellulare Complex

Yamamoto, K., Rutherford, S. A., Rajagopalan, M., Hirakawa, H., Kuhara, S., Banno, Y., Fujii, H. & Madiraju, M. V. V. S., Oct 2004, In : Journal of the Faculty of Agriculture, Kyushu University. 49, 2, p. 375-381 7 p.

Research output: Contribution to journalArticle

Heterologous expression and functional analysis of the gene cluster for the biosynthesis of and immunity to the lantibiotic, nukacin ISK-1

Aso, Y., Nagao, J. I., Koga, H., Okuda, K. I., Kanemasa, Y., Sashihara, T., Nakayama, J. & Sonomoto, K., Dec 2004, In : Journal of Bioscience and Bioengineering. 98, 6, p. 429-436 8 p.

Research output: Contribution to journalArticle

31 Citations (Scopus)

High butanol production by Clostridium saccharoperbutylacetonicum N1-4 in fed-batch culture with pH-stat continuous butyric acid and glucose feeding method

Tashiro, Y., Takeda, K., Kobayashi, G., Sonomoto, K., Ishizaki, A. & Yoshino, S., Oct 2004, In : Journal of Bioscience and Bioengineering. 98, 4, p. 263-268 6 p.

Research output: Contribution to journalArticle

144 Citations (Scopus)

Identification of BMP and Activin Membrane-bound Inhibitor (BAMBI), an Inhibitor of Transforming Growth Factor-β Signaling, as a Target of the β-Catenin Pathway in Colorectal Tumor Cells

Sekiya, T., Adachi, S., Kohu, K., Yamada, T., Higuchi, O., Furukawa, Y., Nakamura, Y., Nakamura, T., Tashiro, K., Kuhara, S., Ohwada, S. & Akiyama, T., Feb 20 2004, In : Journal of Biological Chemistry. 279, 8, p. 6840-6846 7 p.

Research output: Contribution to journalArticle

114 Citations (Scopus)

IL-10 augments antibody production in in Vitro immunized lymphocytes by inducing a Th2-type response and B cell maturation

Xu, Q., Katakura, Y., Yamashita, M., Fang, S., Tamura, T., Matsumoto, S. E., Aiba, Y., Teruya, K., Osada, K., Nishikawa, R. & Shirahata, S., Nov 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 11, p. 2279-2284 6 p.

Research output: Contribution to journalArticle

21 Citations (Scopus)

Inheritance of a body shape mutant named "Short Segment" of the domesticated silkworm, Bombyx mori

Banno, Y., Nishikawa, K., Nishisaka, A., Tamura, K., Yamamoto, K. & Fujii, H., Feb 1 2004, In : Journal of Insect Biotechnology and Sericology. 73, 1, p. 35-37 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

In vivo and in vitro interactions of the Bombyx mori chymotrypsin inhibitor b1 with Escherichia coli

He, N., Aso, Y., Fujii, H., Banno, Y. & Yamamoto, K., Apr 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 4, p. 835-840 6 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

M chromosome of the wild silkworm, Bombyx mandarina (n = 27), corresponds to two chromosomes in the domesticated silkworm, Bombyx mori (n = 28)

Banno, Y., Nakamura, T., Nagashima, E., Fujii, H. & Doira, H., Feb 1 2004, In : Genome. 47, 1, p. 96-101 6 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Mitogenic properties of pokeweed lectin-D isoforms on human peripheral blood lymphocytes: Non-mitogen PL-D1 and mitogen PL-D2

Yamaguchi, K., Uechi, M., Katakura, Y., Oda, T. & Ishiguro, M., Jul 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 7, p. 1591-1593 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Molecular basis for regulating cellular senescence program and its possible application to drug design

Katakura, Y., Jan 1 2004, In : Nippon Nogeikagaku Kaishi. 78, 12, p. 1142-1147 6 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Proteomic studies of lipopolysaccharide-induced polypeptides in the silkworm, Bombyx mori

Wang, Y., Zhang, P., Fujii, H., Banno, Y., Yamamoto, K. & Aso, Y., Aug 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 8, p. 1821-1823 3 p.

Research output: Contribution to journalArticle

20 Citations (Scopus)

Purification and characterization of chymotrypsin inhibitor CI-3 from hemolymph of silkworm, Bombyx mori

Zhao, Q., He, N., Shirai, K., Fujii, H., Banno, Y. & Yamamoto, K., Feb 1 2004, In : Journal of the Faculty of Agriculture, Kyushu University. 49, 1, p. 93-99 7 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Sorting nexin homologues are targets of phosphatidylinositol 3-phosphate in sporulation of Schizosaccharomyces pombe

Koga, T., Onishi, M., Nakamura, Y., Hirata, A., Nakamura, T., Shimoda, C., Iwaki, T., Takegawa, K. & Fukui, Y., Jun 1 2004, In : Genes to Cells. 9, 6, p. 561-574 14 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

Targeting of proteins to endoplasmic reticulum-derived compartments in plants. The importance of RNA localization

Crofts, A. J., Washida, H., Okita, T. W., Ogawa, M., Kumamaru, T. & Satoh, H., Nov 1 2004, In : Plant physiology. 136, 3, p. 3414-3419 6 p.

Research output: Contribution to journalReview article

55 Citations (Scopus)

The basis for colorless hemolymph and cocoons in the Y-gene recessive Bombyx mori mutants: A defect in the cellular uptake of carotenoids

Tsuchida, K., Katagiri, C., Tanaka, Y., Tabunoki, H., Sato, R., Maekawa, H., Takada, N., Banno, Y., Fujii, H., Wells, M. A. & Jouni, Z. E., Oct 1 2004, In : Journal of insect physiology. 50, 10, p. 975-983 9 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Use of segment-based microarray in the analysis of global gene expression in response to various environmental stresses in the cyanonbacterium Anabaena sp. PCC 7120

Sato, N., Ohmori, M., Ikeuchi, M., Tashiro, K., Wolk, C. P., Kaneko, T., Okasa, K., Tsuzuki, M., Ehira, S., Katoh, H., Okamoto, S., Yoshimura, H., Fijisawa, T., Kamei, A., Yoshihara, S., Narikawa, R., Hamano, T., Tabata, S. & Kuhara, S., May 4 2004, In : Journal of General and Applied Microbiology. 50, 1, p. 1-8 8 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Utility of dry gel from two-dimensional electrophoresis for peptide mass fingerprinting analysis of silkworm proteins

Zhang, P., Yamamoto, K., Wang, Y., Banno, Y., Fujii, H., Miake, F., Kashige, N. & Aso, Y., Oct 1 2004, In : Bioscience, Biotechnology and Biochemistry. 68, 10, p. 2148-2154 7 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)
2003

A comparative study and phage typing of silage-making Lactobacillus bacteriophages

Doi, K., Zhang, Y., Nishizaki, Y., Umeda, A., Ohmomo, S. & Ogata, S., Jan 1 2003, In : Journal of Bioscience and Bioengineering. 95, 5, p. 518-525 8 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

A framework of grid-oriented genetic algorithms for large-scale optimization in bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., Jan 1 2003, p. 623-630. 8 p.

Research output: Contribution to conferencePaper

8 Citations (Scopus)

A hybrid system using both promoter activation and gene amplification for establishing exogenous protein hyper-producing cell lines

Dong, X. Y., Teruya, K., Katakura, Y., Zhang, Y., Miura, T., Daimon, Y., Mori, T., Ohashi, H. & Shirahata, S., Dec 1 2003, In : Cytotechnology. 43, 1-3, p. 11-17 7 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Amino acid residue substitution at t-cell determinant-flanking sites in β-lactoglobulin modulates antigen presentation to t cells through subtle conformational change

Ametani, A., Sakurai, T., Katakura, Y., Kuhara, S., Hirakawa, H., Hosoi, T., Dosako, S. I. & Kaminogawa, S., Jan 1 2003, In : Bioscience, Biotechnology and Biochemistry. 67, 7, p. 1507-1514 8 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Analysis of initial conditions for polymerization reaction using fuzzy neural network and genetic algorithm

Hanai, T., Ohki, T., Honda, H. & Kobayashi, T., Jul 15 2003, In : Computers and Chemical Engineering. 27, 7, p. 1011-1019 9 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays

Hayashi, S., Aono, R., Hanai, T., Mori, H., Kobayashi, T. & Honda, H., Jan 1 2003, In : Journal of Bioscience and Bioengineering. 95, 4, p. 379-383 5 p.

Research output: Contribution to journalArticle

26 Citations (Scopus)

Biochemical and molecular characterization of a rice glutelin allele for the GluA-1 gene

Qu, L. Q., Wei, X. L., Satoh, H., Kumamaru, T., Ogawa, M. & Takaiwa, F., Jun 1 2003, In : Theoretical and Applied Genetics. 107, 1, p. 20-25 6 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., Jan 1 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 104-113 10 p. 1227309. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

83 Citations (Scopus)

Decreased Tumorigenicity In Vivo When Transforming Growth Factor β Treatment Causes Cancer Cell Senescence

Katakura, Y., Nakata, E., Tabira, Y., Miura, T., Teruya, K., Tsuchiya, T. & Shirahata, S., Jan 1 2003, In : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 815-821 7 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)

Discovery of novel transcription control relationships with gene regulatory networks generated from multiple-disruption full genome expression libraries

Aburatani, S., Tashiro, K., Savoie, C. J., Nishizawa, M., Hayashi, K., Ito, Y., Muta, S., Yamamoto, K., Ogawa, M., Enomoto, A., Masaki, M., Watanabe, S., Maki, Y., Takahashi, Y., Eguchi, Y., Sakaki, Y. & Kuhara, S., Apr 21 2003, In : DNA Research. 10, 1, p. 1-8 8 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Downregulation of Cap43 gene by von Hippel-Lindau tumor suppressor protein in human renal cancer cells

Masuda, K., Ono, M., Okamoto, M., Morikawa, W., Otsubo, M., Migita, T., Tsuneyosh, M., Okuda, H., Shuin, T., Naito, S. & Kuwano, M., Jul 20 2003, In : International Journal of Cancer. 105, 6, p. 803-810 8 p.

Research output: Contribution to journalArticle

57 Citations (Scopus)

Effect of heterologous expression of molecular chaperone DnaK from Tetragenococcus halophilus on salinity adaptation of Escherichia coli

Sugimoto, S., Nakayama, J., Fukuda, D., Sonezaki, S., Watanabe, M., Tosukhowong, A. & Sonomoto, K., Jan 1 2003, In : Journal of Bioscience and Bioengineering. 96, 2, p. 129-133 5 p.

Research output: Contribution to journalArticle

13 Citations (Scopus)

Effects of UV Dose on Formation of Spontaneously Developing Pocks in Streptomyces azureus ATCC14921

Yamada, S., Suenaga, H., Doi, K., Yoshino, S. & Ogata, S., Jan 1 2003, In : Bioscience, Biotechnology and Biochemistry. 67, 4, p. 797-802 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Estimating gene networks from gene expression data by combining Bayesian network model with promoter element detection

Tamada, Y., Kim, S. Y., Bannai, H., Imoto, S., Tashiro, K., Kuhara, S. & Miyano, S., Dec 1 2003, In : Bioinformatics. 19, SUPPL. 2, p. ii227-ii236

Research output: Contribution to journalArticle

138 Citations (Scopus)

Extracellular carbohydrate-signal triggering cAMP-dependent protein kinase-dependent neuronal actin-reorganization

Chen, N., Furuya, S., Shinoda, Y., Yumoto, M., Ohtake, A., Sato, K., Doi, H., Hashimoto, Y., Kudo, Y. & Higashi, H., Jan 1 2003, In : Neuroscience. 122, 4, p. 985-995 11 p.

Research output: Contribution to journalArticle

10 Citations (Scopus)

Finding multiple solutions based on an evolutionary algorithm for inference of genetic networks by S-system

Morishita, R., Imade, H., Ono, L., Ono, N. & Okamoto, M., 2003, 2003 Congress on Evolutionary Computation, CEC 2003 - Proceedings. IEEE Computer Society, Vol. 1. p. 615-622 8 p. 1299633

Research output: Chapter in Book/Report/Conference proceedingConference contribution

25 Citations (Scopus)

Ganglioside/calmodulin kinase II signal inducing cdc42-mediated neuronal actin reorganization

Chen, N., Furuya, S., Doi, H., Hashimoto, Y., Kudo, Y. & Higashi, H., Aug 4 2003, In : Neuroscience. 120, 1, p. 163-176 14 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)
10 Citations (Scopus)
20 Citations (Scopus)

Identification of the lantibiotic nisin q, a new natural nisin variant produced by lactococcus lactis 61-14 isolated from a river in japan

Zendo, T., Fukao, M., Ueda, K., Higuchi, T., Nakayama, J. & Sonomoto, K., Jan 1 2003, In : Bioscience, Biotechnology and Biochemistry. 67, 7, p. 1616-1619 4 p.

Research output: Contribution to journalArticle

93 Citations (Scopus)

In pursuit of various novel functions of lactic acid bacteria

Aso, Y., Nagao, J. I., Nakayama, J. & Sonomoto, K., Jan 1 2003, In : Nippon Nogeikagaku Kaishi. 77, 8, p. 741-743 3 p.

Research output: Contribution to journalArticle

Making plastics from garbage: A novel process for poly-L-lactate production from municipal food waste

Sakai, K., Taniguchi, M., Miura, S., Ohara, H., Matsumoto, T. & Shirai, Y., Jul 1 2003, In : Journal of Industrial Ecology. 7, 3-4, p. 63-74 12 p.

Research output: Contribution to journalArticle

80 Citations (Scopus)

Mutations of the silkworm molybdenum cofactor sulfurase gene, og, cause translucent larval skin

Kômoto, N., Sezutsu, H., Yukuhiro, K., Banno, Y. & Fujii, H., Apr 1 2003, In : Insect Biochemistry and Molecular Biology. 33, 4, p. 417-427 11 p.

Research output: Contribution to journalArticle

32 Citations (Scopus)

Nucleotide sequence of conjugative and integrating plasmid pSLS from streptomyces laurentii ATCC31255

Sakemi, H., Nishitake, S., Rodprapakorn, M., Shirakami, T., Takechi, S., Doi, K. & Ogata, S., Feb 1 2003, In : Journal of the Faculty of Agriculture, Kyushu University. 47, 2, p. 407-417 11 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)