Research Output 1979 2020

2015
49 Citations (Scopus)
2-Propanol
Gene expression
Cell Count
Sensors
Quorum Sensing
1 Citation (Scopus)

Spatiotemporal expression of Prdm genes during Xenopus development

Eguchi, R., Yoshigai, E., Koga, T., Kuhara, S. & Tashiro, K., Aug 23 2015, In : Cytotechnology. 67, 4, p. 711-719 9 p.

Research output: Contribution to journalArticle

Xenopus
Genes
Gene Expression
Epigenomics
Cell Differentiation
11 Citations (Scopus)

Structural characterization of the catalytic site of a Nilaparvata lugens delta-class glutathione transferase

Yamamoto, K., Higashiura, A., Hossain, M. T., Yamada, N., Shiotsuki, T. & Nakagawa, A., Jan 15 2015, In : Archives of Biochemistry and Biophysics. 566, p. 36-42 7 p.

Research output: Contribution to journalArticle

Glutathione Transferase
Glutathione
Catalytic Domain
Detoxification
Mutagenesis

Structural insight into the active site of a Bombyx mori unclassified glutathione transferase

Hossain, T. & Yamamoto, K., Jan 1 2015, In : Bioscience, Biotechnology and Biochemistry. 79, 6, p. 989-991 3 p.

Research output: Contribution to journalArticle

Bombyx
Glutathione Transferase
Catalytic Domain
Amino Acids
Detoxification
Biofuels
biofuels
Biomass
engineering
biomass
15 Citations (Scopus)

The impact of a single-nucleotide mutation of bgl2 on cellulase induction in a Trichoderma reesei mutant

Shida, Y., Yamaguchi, K., Nitta, M., Nakamura, A., Takahashi, M., Kidokoro, S. I., Mori, K., Tashiro, K., Kuhara, S., Matsuzawa, T., Yaoi, K., Sakamoto, Y., Tanaka, N., Morikawa, Y. & Ogasawara, W., Dec 30 2015, In : Biotechnology for Biofuels. 8, 1, 230.

Research output: Contribution to journalArticle

Trichoderma
Cellulase
Nucleotides
mutation
Cellulose
9 Citations (Scopus)

Thermoadaptation-directed enzyme evolution in an error-prone thermophile derived from Geobacillus kaustophilus HTA426

Suzuki, H., Kobayashi, J., Wada, K., Furukawa, M. & Doi, K., Jan 1 2015, In : Applied and environmental microbiology. 81, 1, p. 149-158 10 p.

Research output: Contribution to journalArticle

Bacillus kaustophilus
thermophilic microorganisms
Geobacillus
Bacillus subtilis
enzyme
1 Citation (Scopus)

Transcriptional regulation of xylose utilization in Enterococcus mundtii QU 25

Yanase, H., Araya-Kojima, T., Shiwa, Y., Watanabe, S., Zendo, T., Chibazakura, T., Shimizu-Kadota, M., Sonomoto, K. & Yoshikawa, H., Jan 1 2015, In : RSC Advances. 5, 113, p. 93283-93292 10 p.

Research output: Contribution to journalArticle

Xylose
Fermentation
Genes
Glucose
Lactic Acid
12 Citations (Scopus)

Transcriptomic analysis of temperature responses of Aspergillus kawachii during barley koji production

Futagami, T., Mori, K., Wada, S., Ida, H., Kajiwara, Y., Takashita, H., Tashiro, K., Yamada, O., Omori, T., Kuhara, S. & Goto, M., Jan 1 2015, In : Applied and environmental microbiology. 81, 4, p. 1353-1363 11 p.

Research output: Contribution to journalArticle

koji
Hordeum
Aspergillus
transcriptomics
barley
21 Citations (Scopus)

Transglycosylation activity of glycosynthase mutants of endo-β-N-Acetylglucosaminidase from coprinopsis cinerea

Eshima, Y., Higuchi, Y., Kinoshita, T., Nakakita, S. I. & Takegawa, K., Jul 21 2015, In : PloS one. 10, 7, e0132859.

Research output: Contribution to journalArticle

Coprinopsis cinerea
Acetylglucosaminidase
Oligosaccharides
oligosaccharides
mutants
23 Citations (Scopus)

Two putatively novel bacteriocins active against Gram-negative food borne pathogens produced by Weissella hellenica BCC 7293

Woraprayote, W., Pumpuang, L., Tosukhowong, A., Roytrakul, S., Perez, R. H., Zendo, T., Sonomoto, K., Benjakul, S. & Visessanguan, W., Apr 1 2015, In : Food Control. 55, p. 176-184 9 p.

Research output: Contribution to journalArticle

Weissella hellenica
Weissella
Bacteriocins
bacteriocins
food pathogens
5 Citations (Scopus)

Using dynamic sensitivities to characterize metabolic reaction systems

Sriyudthsak, K., Uno, H., Gunawan, R. & Shiraishi, F., Nov 1 2015, In : Mathematical Biosciences. 269, p. 153-163 11 p.

Research output: Contribution to journalArticle

Metabolites
Logarithmic
metabolites
Transient Behavior
Metabolic Networks and Pathways

Vsl1p cooperates with Fsv1p for vacuolar protein transport and homotypic fusion in Schizosaccharomyces pombe

Hosomi, A., Higuchi, Y., Yagi, S. & Takegawa, K., Jan 1 2015, In : Microbiology. 161, p. 89-98 10 p.

Research output: Contribution to journalArticle

Schizosaccharomyces
Protein Transport
SNARE Proteins
Membrane Fusion Proteins
Saccharomyces cerevisiae

世界のジャポニカ米市場と日本産米の競争力

伊東正一, 南石晃明, 陳妹凝, 加賀爪優, 加古敏之, 齋藤文信, 渡邉大樹, 齋藤陽子, 松江勇次, 加藤和直, 松波寿典 & 熊丸敏博, 2015, 農林統計出版.

Research output: Book/ReportBook

2014
8 Citations (Scopus)

An efficient and very accurate method for calculating steady-state sensitivities in metabolic reaction systems

Shiraishi, F., Yoshida, E. & Voit, E. O., Nov 1 2014, In : IEEE/ACM Transactions on Computational Biology and Bioinformatics. 11, 6, p. 1077-1086 10 p., 6857342.

Research output: Contribution to journalArticle

Systems Theory
Jurisprudence
Systems Analysis
Aspartic Acid
Software
2 Citations (Scopus)

A novel third chromosomal locus controls susceptibility to Autographa californica multiple nucleopolyhedrovirus in the silkworm, Bombyx mori

Xu, J., Kusakabe, T., Yamamoto, K., Suetsugu, Y., Mon, H., Li, Z., Zhu, L., Iiyama, K., Banno, Y., Yoshimura, K. & Lee, J. M., Jan 1 2014, In : Applied Microbiology and Biotechnology. 98, 7, p. 3049-3058 10 p.

Research output: Contribution to journalArticle

Nucleopolyhedrovirus
Bombyx
Internal-External Control
Baculoviridae
Chromosomes, Human, Pair 3
6 Citations (Scopus)

A U-system approach for predicting metabolic behaviors and responses based on an alleged metabolic reaction network

Sriyudthsak, K., Sawada, Y., Chiba, Y., Yamashita, Y., Kanaya, S., Onouchi, H., Fujiwara, T., Naito, S., Voit, E. O., Shiraishi, F. & Hirai, M. Y., Dec 12 2014, In : BMC systems biology. 8, 5, S4.

Research output: Contribution to journalArticle

Reaction Network
Metabolic Network
Metabolic Networks and Pathways
Arabidopsis
Systems Theory
9 Citations (Scopus)

Bacterial community structure and biochemical changes associated with composting of lignocellulosic oil palm empty fruit bunch

Zainudin, M. H. M., Hassan, M. A., Md Shah, U. K., Abdullah, N., Tokura, M., Yasueda, H., Shirai, Y., Sakai, K. & Baharuddin, A. S., Jan 23 2014, In : BioResources. 9, 1, p. 316-335 20 p.

Research output: Contribution to journalReview article

Composting
Palm oil
Fruits
composting
community structure
5 Citations (Scopus)

Bactericidal activity of nukacin ISK-1: An alternative mode of action

Roy, U., Islam, M. R., Nagao, J. I., Iida, H., Mahin, A. A., Li, M., Zendo, T., Nakayama, J. & Sonomoto, K., Jan 1 2014, In : Bioscience, Biotechnology and Biochemistry. 78, 7, p. 1270-1273 4 p.

Research output: Contribution to journalArticle

Micrococcus luteus
Bacilli
Bacillus subtilis
Staphylococcus
Membrane Potentials
3 Citations (Scopus)

Biochemical characterization of an L-tryptophan dehydrogenase from the photoautotrophic cyanobacterium Nostoc punctiforme

Ogura, R., Wakamatsu, T., Mutaguchi, Y., Doi, K. & Ohshima, T., Jun 10 2014, In : Enzyme and Microbial Technology. 60, p. 40-46 7 p.

Research output: Contribution to journalArticle

Nostoc
Amination
Deamination
Cyanobacteria
Tryptophan
11 Citations (Scopus)

Biological function of a DUF95 superfamily protein involved in the biosynthesis of a circular bacteriocin, leucocyclicin Q

Mu, F., Masuda, Y., Zendo, T., Ono, H., Kitagawa, H., Ito, H., Nakayama, J. & Sonomoto, K., Feb 1 2014, In : Journal of Bioscience and Bioengineering. 117, 2, p. 158-164 7 p.

Research output: Contribution to journalArticle

Bacteriocins
Biosynthesis
Proteins
Genes
Cyclization
14 Citations (Scopus)

Characterization of RNA binding protein RBP-P reveals a possible role in rice glutelin gene expression and RNA localization

Doroshenk, K. A., Tian, L., Crofts, A. J., Kumamaru, T. & Okita, T. W., Jan 1 2014, In : Plant Molecular Biology. 85, 4, p. 381-394 14 p.

Research output: Contribution to journalArticle

glutelins
RNA-binding proteins
RNA-Binding Proteins
Glutens
Protein Binding
12 Citations (Scopus)

Complete genome sequence of Enterococcus mundtii QU 25, an efficient L-(+)-lactic acid-producing bacterium

Yuh, S., Hiroaki, Y., Yuu, H., Shohei, S., Tomoko, A. K., Satoru, W., Takeshi, Z., Taku, C., Mariko, S. K., Hirofumi, Y. & Kenji, S., Aug 2014, In : DNA Research. 21, 4, p. 369-377 9 p.

Research output: Contribution to journalArticle

Enterococcus
Lactic Acid
Genome
Bacteria
Plasmids
117 Citations (Scopus)

Dissection of the octoploid strawberry genome by deep sequencing of the genomes of fragaria species

Hirakawa, H., Shirasawa, K., Kosugi, S., Tashiro, K., Nakayama, S., Yamada, M., Kohara, M., Watanabe, A., Kishida, Y., Fujishiro, T., Tsuruoka, H., Minami, C., Sasamoto, S., Kato, M., Nanri, K., Komaki, A., Yanagi, T., Guoxin, Q., Maeda, F., Ishikawa, M. & 4 others, Kuhara, S., Sato, S., Tabata, S. & Isobe, S. N., Apr 2014, In : DNA Research. 21, 2, p. 169-181 13 p.

Research output: Contribution to journalArticle

High-Throughput Nucleotide Sequencing
Fragaria
Dissection
Genome
Polyploidy

Diversity of glutelin acidic subunit polypeptides in rice cultivars collected from Northern Vietnam

Hoai, T. T. T., Suu, T. D., Satoh, H. & Kumamaru, T., Jun 2014, In : Plant Breeding. 133, 3, p. 341-347 7 p.

Research output: Contribution to journalArticle

glutelins
Glutens
Vietnam
polypeptides
isoelectric focusing
5 Citations (Scopus)

Draft genome sequence of entomopathogenic Serratia liquefaciens strain FK01

Taira, E., Iiyama, K., Mon, H., Mori, K., Akasaka, T., Tashiro, K., Yasunaga-Aoki, C., Lee, J. M. & Kusakabe, T., Jan 1 2014, In : Genome Announcements. 2, 3, e00609-14.

Research output: Contribution to journalArticle

Serratia liquefaciens
Genome
Bombyx
Base Composition
Bacteria
5 Citations (Scopus)

Draft genome sequence of Lactobacillus namurensis Chizuka 01, isolated from nukadoko, a pickling bed of fermented rice bran

Kato, K., Toh, H., Sakamoto, N., Mori, K., Tashiro, K., Hibi, N., Sonomoto, K. & Nakayama, J., Jan 1 2014, In : Genome Announcements. 2, 1, e01263-13.

Research output: Contribution to journalArticle

Lactobacillus
Vegetables
Japan
Genome
Oryza
60 Citations (Scopus)

Early endosome motility spatially organizes polysome distribution

Higuchi, Y., Ashwin, P., Roger, Y. & Steinberg, G., Feb 3 2014, In : Journal of Cell Biology. 204, 3, p. 343-357 15 p.

Research output: Contribution to journalArticle

Polyribosomes
Endosomes
Ribosomes
Ribosome Subunits
Kinesin
9 Citations (Scopus)

Effect of enzymatic deamidation by protein-glutaminase on the textural and microstructural properties of set yoghurt

Miwa, N., Nio, N. & Sonomoto, K., May 1 2014, In : International Dairy Journal. 36, 1, p. 1-5 5 p.

Research output: Contribution to journalArticle

deamidation
glutaminase
Glutaminase
Yogurt
yogurt
5 Citations (Scopus)
Sunlight
Ultraviolet Rays
Ultraviolet radiation
Titanium dioxide
irradiation
51 Citations (Scopus)

Effects of bifidobacterial supplementation to pregnant women and infants in the prevention of allergy development in infants and on fecal microbiota

Enomoto, T., Sowa, M., Nishimori, K., Shimazu, S., Yoshida, A., Yamada, K., Furukawa, F., Nakagawa, T., Yanagisawa, N., Iwabuchi, N., Odamaki, T., Abe, F., Nakayama, J. & Xiao, J. Z., Jan 1 2014, In : Allergology International. 63, 4, p. 575-585 11 p.

Research output: Contribution to journalArticle

Microbiota
Child Development
Pregnant Women
Hypersensitivity
Probiotics
15 Citations (Scopus)

Efficient synthesis of d-branched-chain amino acids and their labeled compounds with stable isotopes using d-amino acid dehydrogenase

Akita, H., Suzuki, H., Doi, K. & Ohshima, T., Jan 1 2014, In : Applied Microbiology and Biotechnology. 98, 3, p. 1135-1143 9 p.

Research output: Contribution to journalArticle

Branched Chain Amino Acids
Isotopes
Oxidoreductases
Amino Acids
Leucine
6 Citations (Scopus)

Electrochemically reduced water protects neural cells from oxidative damage

Kashiwagi, T., Yan, H., Hamasaki, T., Kinjo, T., Nakamichi, N., Teruya, K., Kabayama, S. & Shirahata, S., 2014, In : Oxidative medicine and cellular longevity. 2014, 869121.

Research output: Contribution to journalArticle

Water
Reactive Oxygen Species
Nitric Oxide
PC12 Cells
Cytotoxicity
8 Citations (Scopus)

Enzymatic characteristics of an ApaH-like phosphatase, PrpA, and a diadenosine tetraphosphate hydrolase, ApaH, from Myxococcus xanthus

Sasaki, M., Takegawa, K. & Kimura, Y., Sep 17 2014, In : FEBS Letters. 588, 18, p. 3395-3402 8 p.

Research output: Contribution to journalArticle

bis(5'-nucleosyl)tetraphosphatase (asymmetrical)
Myxococcus xanthus
Phosphoric Monoester Hydrolases
Hydrolases
Adenosine Triphosphate

Erratum: Catalyser-21™, a mineral water derived from leaf soil, inhibits tumor cell invasion and angiogenesis (Cytotechnology (2007) 55 (61-70) (DOI 10.1007/s10616-007-9073-4))

Ye, J., Li, Y., Hamasaki, T., Nakamichi, N., Kawahara, T., Osada, K., Teruya, K., Kato, Y., Toh, K., Abe, M., Katakura, Y., Noguchi, K. & Shirahata, S., Mar 1 2014, In : Cytotechnology. 66, 2, p. 355-356 2 p.

Research output: Contribution to journalComment/debate

Mineral Waters
Tumors
Soil
Minerals
Cells
Arches
Crystal structure
carbonyl reductase (NADPH)

Essentiality of de novo L-serine synthesis for embryonic development and higher functions

Furuya, S., Sayano, T. & Esaki, K., 2014, In : Seikagaku. 86, 3, p. 372-381 10 p.

Research output: Contribution to journalReview article

Gene expression regulation
Phosphoglycerate Dehydrogenase
Serine
Brain
Animals
9 Citations (Scopus)

Estimation of kinetic parameters in an S-system equation model for a metabolic reaction system using the Newton-Raphson method

Iwata, M., Sriyudthsak, K., Hirai, M. Y. & Shiraishi, F., Feb 7 2014, In : Mathematical Biosciences. 248, 1, p. 11-21 11 p.

Research output: Contribution to journalArticle

S-system
Newton-Raphson method
Kinetic parameters
Kinetics
kinetics
62 Citations (Scopus)

FGFR1 activation is an escape mechanism in human lung cancer cells resistant to afatinib, a pan-EGFR family kinase inhibitor

Azuma, K., Kawahara, A., Sonoda, K., Nakashima, K., Tashiro, K., Watari, K., Izumi, H., Kage, M., Kuwano, M., Ono, M. & Hoshino, T., 2014, In : Oncotarget. 5, 15, p. 5908-5919 12 p.

Research output: Contribution to journalArticle

Lung Neoplasms
Phosphotransferases
Fibroblast Growth Factor 2
Drug Resistance
Cell Survival
18 Citations (Scopus)

FOXO3a potentiates hTERT gene expression by activating c-MYC and extends the replicative life-span of human fibroblast

Yamashita, S., Ogawa, K., Ikei, T., Fujiki, T. & Katakura, Y., Jul 7 2014, In : PloS one. 9, 7, e101864.

Research output: Contribution to journalArticle

Fibroblasts
Gene expression
fibroblasts
Cell Aging
Gene Expression
5 Citations (Scopus)

Functional analysis of putative phosphoenolpyruvate transporters localized to the Golgi apparatus in Schizosaccharomyces pombe

Yoritsune, K. I., Higuchi, Y., Matsuzawa, T. & Takegawa, K., Nov 1 2014, In : FEMS Yeast Research. 14, 7, p. 1101-1109 9 p.

Research output: Contribution to journalArticle

Phosphoenolpyruvate
Schizosaccharomyces
Golgi Apparatus
Pyruvic Acid
Green Fluorescent Proteins
10 Citations (Scopus)

Gene cluster responsible for secretion of and immunity to multiple bacteriocins, the NKR-5-3 enterocins

Ishibashi, N., Himeno, K., Masuda, Y., Perez, R. H., Iwatani, S., Zendo, T., Wilaipun, P., Leelawatcharamas, V., Nakayama, J. & Sonomotoa, K., Jan 1 2014, In : Applied and environmental microbiology. 80, 21, p. 6647-6655 9 p.

Research output: Contribution to journalArticle

enterocins
Bacteriocins
bacteriocins
Multigene Family
immunity
7 Citations (Scopus)

Glutathione-binding site of a Bombyx mori theta-class glutathione transferase

Hossain, M. D. T., Yamada, N. & Yamamoto, K., May 21 2014, In : PloS one. 9, 5, e97740.

Research output: Contribution to journalArticle

Bombyx
Bombyx mori
silkworms
Glutathione Transferase
glutathione transferase
23 Citations (Scopus)

Heat shock factor 1 accelerates hepatocellular carcinoma development by activating nuclear factor-κB/mitogen-activated protein kinase

Chuma, M., Sakamoto, N., Nakai, A., Hige, S., Nakanishi, M., Natsuizaka, M., Suda, G., Sho, T., Hatanaka, K., Matsuno, Y., Yokoo, H., Kamiyama, T., Taketomi, A., Fujii, G., Tashiro, K., Hikiba, Y., Fujimoto, M., Asaka, M. & Maeda, S., Feb 1 2014, In : Carcinogenesis. 35, 2, p. 272-281 10 p., bgt343.

Research output: Contribution to journalArticle

Mitogen-Activated Protein Kinases
Hepatocellular Carcinoma
Shock
Hot Temperature
Hepatocytes
3 Citations (Scopus)

Identification of anti-allergic lactic acid bacteria that suppress Ca2+ influx and histamine release in human basophilic cells

Fujii, K., Fujiki, T., Koiso, A., Hirakawa, K., Yamashita, M., Matsumoto, T., Hasegawa, T., Morimatsu, F. & Katakura, Y., Jan 1 2014, In : Journal of Functional Foods. 10, p. 370-376 7 p.

Research output: Contribution to journalArticle

Anti-Allergic Agents
Histamine Release
histamine
lactic acid bacteria
Lactic Acid

Identification of residues essential for catalytic activity of a Bombyx mori arginase

Hossain, T., Nagaoka, S. & Yamamoto, K., Jan 1 2014, In : Journal of Insect Biotechnology and Sericology. 83, 2, p. 47-51 5 p.

Research output: Contribution to journalArticle

Arginase
arginase
Bombyx
Bombyx mori
catalytic activity
13 Citations (Scopus)

Immuno-electron microscopy of primary cell cultures from genetically modified animals in liquid by atmospheric scanning electron microscopy

Kinoshita, T., Mori, Y., Hirano, K., Sugimoto, S., Okuda, K. I., Matsumoto, S., Namiki, T., Ebihara, T., Kawata, M., Nishiyama, H., Sato, M., Suga, M., Higashiyama, K., Sonomoto, K., Mizunoe, Y., Nishihara, S. & Sato, C., Apr 2014, In : Microscopy and Microanalysis. 20, 2, p. 469-483 15 p.

Research output: Contribution to journalArticle

Cell culture
Electron microscopy
animals
electron microscopy
Animals
8 Citations (Scopus)

Influence of single-nucleotide polymorphisms in the gene encoding granule-bound starch synthase I on amylose content in Vietnamese rice cultivars

Hoai, T. T. T., Matsusaka, H., Toyosawa, Y., Suu, T. D., Satoh, H. & Kumamaru, T., Jan 1 2014, In : Breeding Science. 64, 2, p. 142-148 7 p.

Research output: Contribution to journalArticle

starch synthase
Amylose
amylose
single nucleotide polymorphism
Single Nucleotide Polymorphism

Insights into metabolism and the galactose recognition system from microarray analysis in the fission yeast schizosaccharomyces pombe

Takegawa, K. & Matsuzawa, T., Nov 1 2014, Microbial Production: From Genome Design to Cell Engineering. Springer Japan, Vol. 9784431546078. p. 109-118 10 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

Schizosaccharomyces
Microarray Analysis
Microarrays
Galactose
Metabolism
12 Citations (Scopus)

Isolation of thermophilic l-lactic acid producing bacteria showing homo-fermentative manner under high aeration condition

Tongpim, S., Meidong, R., Poudel, P., Yoshino, S., Okugawa, Y., Tashiro, Y., Taniguchi, M. & Sakai, K., Mar 1 2014, In : Journal of Bioscience and Bioengineering. 117, 3, p. 318-324 7 p.

Research output: Contribution to journalArticle

Lactic acid
Lactic Acid
Bacteria
Bacilli
Oxygen