Research Output 1979 2020

2013
8 Citations (Scopus)

Construction of a ligD disruptant for efficient gene targeting in white koji mold, aspergillus kawachii

Tashiro, S., Futagami, T., Wada, S., Kajiwara, Y., Takashita, H., Omori, T., Takahashi, T., Yamada, O., Takegawa, K. & Goto, M., Jul 30 2013, In : Journal of General and Applied Microbiology. 59, 3, p. 257-260 4 p.

Research output: Contribution to journalComment/debate

Microbial Genetics
Gene Knockout Techniques
Fungal Proteins
Gene Targeting
Homologous Recombination
51 Citations (Scopus)

Continuous butanol fermentation from xylose with high cell density by cell recycling system

Zheng, J., Tashiro, Y., Yoshida, T., Gao, M., Wang, Q. & Sonomoto, K., Jan 1 2013, In : Bioresource Technology. 129, p. 360-365 6 p.

Research output: Contribution to journalArticle

Butanols
Xylose
Butenes
Fermentation
fermentation
15 Citations (Scopus)

Crystal structure of a Bombyx mori sigma-class glutathione transferase exhibiting prostaglandin e synthase activity

Yamamoto, K., Higashiura, A., Suzuki, M., Aritake, K., Urade, Y., Uodome, N. & Nakagawa, A., Jun 1 2013, In : Biochimica et Biophysica Acta - General Subjects. 1830, 6, p. 3711-3718 8 p.

Research output: Contribution to journalArticle

Bombyx
Prostaglandin-Endoperoxide Synthases
Glutathione Transferase
Prostaglandins
Glutathione
89 Citations (Scopus)

Deficiency of schnurri-2, an MHC enhancer binding protein, induces mild chronic inflammation in the brain and confers molecular, neuronal, and behavioral phenotypes related to schizophrenia

Takao, K., Kobayashi, K., Hagihara, H., Ohira, K., Shoji, H., Hattori, S., Koshimizu, H., Umemori, J., Toyama, K., Nakamura, H. K., Kuroiwa, M., Maeda, J., Atsuzawa, K., Esaki, K., Yamaguchi, S., Furuya, S., Takagi, T., Walton, N. M., Hayashi, N., Suzuki, H. & 7 others, Higuchi, M., Usuda, N., Suhara, T., Nishi, A., Matsumoto, M., Ishii, S. & Miyakawa, T., Jul 1 2013, In : Neuropsychopharmacology. 38, 8, p. 1409-1425 17 p.

Research output: Contribution to journalArticle

Encephalitis
Schizophrenia
Carrier Proteins
Phenotype
Knockout Mice
13 Citations (Scopus)

De novo sequencing and comparative analysis of expressed sequence tags from gynodioecious fig (Ficus carica L.) fruits: Caprifig and common fig

Ikegami, H., Habu, T., Mori, K., Nogata, H., Hirata, C., Hirashima, K., Tashiro, K. & Kuhara, S., Jan 1 2013, In : Tree Genetics and Genomes. 9, 4, p. 1075-1088 14 p.

Research output: Contribution to journalArticle

Carica
Ficus
Ficus carica
Expressed Sequence Tags
figs
11 Citations (Scopus)

Development of a method for long-term preservation of Bombyx mori silkworm strains using frozen ovaries

Banno, Y., Nagasaki, K., Tsukada, M., Minohara, Y., Banno, J., Nishikawa, K., Yamamoto, K., Tamura, K. & Fujii, T., Jun 1 2013, In : Cryobiology. 66, 3, p. 283-287 5 p.

Research output: Contribution to journalArticle

Bombyx
Moths
Bombyx mori
silkworms
moths
28 Citations (Scopus)

Development of a peptide antagonist against fsr quorum sensing of enterococcus faecalis

Nakayama, J., Yokohata, R., Sato, M., Suzuki, T., Matsufuji, T., Nishiguchi, K., Kawai, T., Yamanaka, Y., Nagata, K., Tanokura, M. & Sonomoto, K., Apr 19 2013, In : ACS Chemical Biology. 8, 4, p. 804-811 8 p.

Research output: Contribution to journalArticle

Quorum Sensing
Enterococcus faecalis
Peptides
Alanine
Amino Acids
19 Citations (Scopus)

Development of INDEL markers to discriminate all genome types rapidly in the genus Oryza

Yamaki, S., Ohyanagi, H., Yamasaki, M., Eiguchi, M., Miyabayashi, T., Kubo, T., Kurata, N. & Nonomura, K. I., Oct 8 2013, In : Breeding Science. 63, 3, p. 246-254 9 p.

Research output: Contribution to journalArticle

Oryza
Genome
genome
Sequence Deletion
Polymerase Chain Reaction
20 Citations (Scopus)

Distribution of D-amino acids in vinegars and involvement of lactic acid bacteria in the production of D-amino acids

Mutaguchi, Y., Ohmori, T., Akano, H., Doi, K. & Ohshima, T., Jan 1 2013, In : SpringerPlus. 2, 1, 691.

Research output: Contribution to journalArticle

vinegars
lactic acid bacteria
amino acids
lactic fermentation
alcohol abuse
12 Citations (Scopus)

Distribution of Virulence Markers among Vibrio vulnificus Isolates of Clinical and Environmental Origin and Regional Characteristics in Japan

Yokochi, N., Tanaka, S., Matsumoto, K., Oishi, H., Tashiro, Y., Yoshikane, Y., Nakashima, M., Kanda, K. & Kobayashi, G., Jan 30 2013, In : PloS one. 8, 1, e55219.

Research output: Contribution to journalArticle

Vibrio vulnificus
Polysaccharides
Virulence
Japan
virulence
1 Citation (Scopus)

Draft genome sequence of D-branched-chain amino acid producer Lactobacillus otakiensis JCM 15040T, isolated from a traditional Japanese pickle

Doi, K., Mori, K., Mutaguchi, Y., Tashiro, K., Fujino, Y., Ohmori, T., Kuhara, S. & Ohshima, T., Jan 1 2013, In : Genome Announcements. 1, 4, e00546-13.

Research output: Contribution to journalArticle

Branched Chain Amino Acids
Base Composition
Lactobacillus
Genome
9 Citations (Scopus)

Draft genome sequence of Geobacillus kaustophilus GBlys, a lysogenic strain with bacteriophage φOH2

Doi, K., Mori, K., Martono, H., Nagayoshi, Y., Fujino, Y., Tashiro, K., Kuhara, S. & Ohshima, T., Jan 1 2013, In : Genome Announcements. 1, 4, e00634-13.

Research output: Contribution to journalArticle

Geobacillus
Base Composition
Bacteriophages
Genome
2 Citations (Scopus)

Draft genome sequence of Paenibacillus popilliae ATCC 14706T

Iiyama, K., Mori, K., Mon, H., Chieda, Y., Lee, J. M., Kusakabe, T., Tashiro, K., Asano, S. I., Yasunaga-Aoki, C. & Shimizu, S., Dec 12 2013, In : Journal of Insect Biotechnology and Sericology. 82, 2, p. 45-48 4 p.

Research output: Contribution to journalArticle

Paenibacillus popilliae
entomopathogenic bacteria
Paenibacillus
Genes
Genome
3 Citations (Scopus)

Draft genome sequence of Pediococcus lolii NGRI 0510QT isolated from ryegrass silage

Doi, K., Mori, K., Tashiro, K., Fujino, Y., Nagayoshi, Y., Hayashi, Y., Kuhara, S. & Ohshima, T., Jan 1 2013, In : Genome Announcements. 1, 1, e00156-12.

Research output: Contribution to journalArticle

Pediococcus
Lolium
Silage
Base Composition
Islands
15 Citations (Scopus)

Drosophila Host Model Reveals New Enterococcus faecalis Quorum-Sensing Associated Virulence Factors

Teixeira, N., Varahan, S., Gorman, M. J., Palmer, K. L., Zaidman-Remy, A., Yokohata, R., Nakayama, J., Hancock, L. E., Jacinto, A., Gilmore, M. S. & de Fátima Silva Lopes, M., May 29 2013, In : PloS one. 8, 5, e64740.

Research output: Contribution to journalArticle

Quorum Sensing
quorum sensing
Enterococcus faecalis
Virulence Factors
Drosophila
56 Citations (Scopus)

D-Serine in glia and neurons derives from 3-phosphoglycerate dehydrogenase

Ehmsen, J. T., Ma, T. M., Sason, H., Rosenberg, D., Ogo, T., Furuya, S., Snyder, S. H. & Wolosker, H., Jul 30 2013, In : Journal of Neuroscience. 33, 30, p. 12464-12469 6 p.

Research output: Contribution to journalArticle

Phosphoglycerate Dehydrogenase
Neuroglia
Serine
Neurons
Enzymes
13 Citations (Scopus)

Effect of enzymatic deamidation on the heat-induced conformational changes in whey protein isolate and its relation to gel properties

Miwa, N., Yokoyama, K., Nio, N. & Sonomoto, K., Mar 6 2013, In : Journal of Agricultural and Food Chemistry. 61, 9, p. 2205-2212 8 p.

Research output: Contribution to journalArticle

deamidation
whey protein isolate
glutaminase
Glutaminase
Hot Temperature
9 Citations (Scopus)

Effect of Lactobacillus brevis 119-2 isolated from Tsuda kabu red turnips on cholesterol levels in cholesterol-administered rats

Watanabe, S., Katsube, T., Hattori, H., Sato, H., Ishijima, T., Nakai, Y., Abe, K. & Sonomoto, K., Jul 1 2013, In : Journal of Bioscience and Bioengineering. 116, 1, p. 45-51 7 p.

Research output: Contribution to journalArticle

Lactobacillus brevis
Brassica napus
Cholesterol
Rats
Nutrition
82 Citations (Scopus)

Effects of bacteriocins on methicillin-resistant Staphylococcus aureus biofilm

Okuda, K. I., Zendo, T., Sugimoto, S., Iwase, T., Tajima, A., Yamada, S., Sonomoto, K. & Mizunoe, Y., Nov 1 2013, In : Antimicrobial Agents and Chemotherapy. 57, 11, p. 5572-5579 8 p.

Research output: Contribution to journalArticle

Bacteriocins
Methicillin-Resistant Staphylococcus aureus
Biofilms
Infection
Glycopeptides
29 Citations (Scopus)

Efficient butanol production without carbon catabolite repression from mixed sugars with Clostridium saccharoperbutylacetonicum N1-4

Noguchi, T., Tashiro, Y., Yoshida, T., Zheng, J., Sakai, K. & Sonomoto, K., Dec 1 2013, In : Journal of Bioscience and Bioengineering. 116, 6, p. 716-721 6 p.

Research output: Contribution to journalArticle

Catabolite Repression
Clostridium
Butanols
Xylose
Butenes
78 Citations (Scopus)

Engineering a synthetic pathway in cyanobacteria for isopropanol production directly from carbon dioxide and light

Kusakabe, T., Tatsuke, T., Tsuruno, K., Hirokawa, Y., Atsumi, S., Liao, J. C. & Hanai, T., Jan 1 2013, In : Metabolic Engineering. 20, p. 101-108 8 p.

Research output: Contribution to journalArticle

Coenzyme A-Transferases
Clostridium
2-Propanol
Cyanobacteria
acetoacetate decarboxylase
Cell Aging
Biotechnology
Transforming Growth Factor beta
Biochemistry
Neoplasms
6 Citations (Scopus)

Ethanol-inducible gene expression using gld1 + promoter in the fission yeast Schizosaccharomyces pombe

Matsuzawa, T., Tohda, H. & Takegawa, K., Aug 1 2013, In : Applied Microbiology and Biotechnology. 97, 15, p. 6835-6843 9 p.

Research output: Contribution to journalArticle

Schizosaccharomyces
Ethanol
Gene Expression
Glucose
1-Propanol
5 Citations (Scopus)

Evaluation of the inhibitory effects of chloroform on ortho-chlorophenol- and chloroethenedechlorinating Desulfitobacterium strains

Futagami, T., Fukaki, Y., Fujihara, H., Takegawa, K., Goto, M. & Furukawa, K., Jan 1 2013, In : AMB Express. 3, p. 1-8 8 p., 30.

Research output: Contribution to journalArticle

Desulfitobacterium
Chloroform
Chlorinated Hydrocarbons
2-chlorophenol
Aromatic Hydrocarbons
65 Citations (Scopus)

Evolutionary changes of multiple visual pigment genes in the complete genome of Pacific bluefin tuna

Nakamura, Y., Mori, K., Saitoh, K., Oshima, K., Mekuchi, M., Sugaya, T., Shigenobu, Y., Ojima, N., Muta, S., Fujiwara, A., Yasuike, M., Oohara, I., Hirakawa, H., Surchowdhury, V., Kobayashi, T., Nakajima, K., Sano, M., Wada, T., Tashiro, K., Ikeo, K. & 4 others, Hattori, M., Kuhara, S., Gojobori, T. & Inouye, K., Jul 2 2013, In : Proceedings of the National Academy of Sciences of the United States of America. 110, 27, p. 11061-11066 6 p.

Research output: Contribution to journalArticle

Retinal Pigments
Fishes
Genome
Tuna
Genes
3 Citations (Scopus)

Exploring the implicit interlayer regulatory mechanism between cells and tissue: Stochastic mathematical analyses of the spontaneous ordering in beating synchronization

Hamada, H., Nomura, F., Kaneko, T., Yasuda, K. & Okamoto, M., Mar 1 2013, In : BioSystems. 111, 3, p. 208-215 8 p.

Research output: Contribution to journalArticle

Synchronization
Tissue
Cell
Fluctuations
Interval
63 Citations (Scopus)

Fucoidan extract enhances the anti-cancer activity of chemotherapeutic agents in MDA-MB-231 and MCF-7 breast cancer cells

Zhang, Z., Teruya, K., Yoshida, T., Eto, H. & Shirahata, S., Jan 1 2013, In : Marine Drugs. 11, 1, p. 81-98 18 p.

Research output: Contribution to journalArticle

Breast Neoplasms
MCF-7 Cells
Neoplasms
Phosphorylation
Apoptosis
3 Citations (Scopus)

Functional expression of schizosaccharomyces pombe Vba2p in the vacuolar membrane of Saccharomyces cerevisiae

Pongcharoen, P., Kawano-Kawada, M., Iwaki, T., Sugimoto, N., Sekito, T., Akiyama, K., Takegawa, K. & Kakinuma, Y., Oct 1 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 9, p. 1988-1990 3 p.

Research output: Contribution to journalArticle

Quinidine
Schizosaccharomyces
Yeast
Lysine
Saccharomyces cerevisiae
4 Citations (Scopus)

Genomic features of Lactococcus lactis IO-1, a lactic acid bacterium that utilizes xylose and produces high levels of L-lactic acid

Shimizu-Kadota, M., Kato, H., Shiwa, Y., Oshima, K., Machii, M., Araya-Kojima, T., Zendo, T., Hattori, M., Sonomoto, K. & Yoshikawa, H., Oct 1 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 9, p. 1804-1808 5 p.

Research output: Contribution to journalArticle

Nisin
Synthetic Genes
Prophages
Horizontal Gene Transfer
Lactococcus lactis
35 Citations (Scopus)

gfsA encodes a novel galactofuranosyltransferase involved in biosynthesis of galactofuranose antigen of O-glycan in Aspergillus nidulans and Aspergillus fumigatus

Komachi, Y., Hatakeyama, S., Motomatsu, H., Futagami, T., Kizjakina, K., Sobrado, P., Ekino, K., Takegawa, K., Goto, M., Nomura, Y. & Oka, T., Dec 1 2013, In : Molecular Microbiology. 90, 5, p. 1054-1073 20 p.

Research output: Contribution to journalArticle

Aspergillus nidulans
O Antigens
Aspergillus fumigatus
Polysaccharides
Cell Wall
1 Citation (Scopus)

Ght2+ is required for UDP-galactose synthesis from extracellular galactose by Schizosaccharomyces pombe

Matsuzawa, T., Hara, F., Tanaka, N., Tohda, H. & Takegawa, K., Jun 1 2013, In : Applied Microbiology and Biotechnology. 97, 11, p. 4957-4964 8 p.

Research output: Contribution to journalArticle

Uridine Diphosphate Galactose
Schizosaccharomyces
Galactose
Monosaccharide Transport Proteins
Uridine Diphosphate Glucose
7 Citations (Scopus)

Haptoglobin proved a prognostic biomarker in peripheral blood of patients with personalized peptide vaccinations for advanced castration-resistant prostate cancer

Pang, X., Tashiro, K., Eguchi, R., Komatsu, N., Sasada, T., Itoh, K. & Kuhara, S., Jun 14 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 4, p. 766-770 5 p.

Research output: Contribution to journalArticle

Haptoglobins
Castration
Biomarkers
Prostatic Neoplasms
Vaccination
19 Citations (Scopus)

High-throughput screening of inhibitors targeting Agr/Fsr quorum sensing in staphylococcus aureus and enterococcus faecalis

Desouky, S. E., Nishiguchi, K., Zendo, T., Igarashi, Y., Williams, P., Sonomoto, K. & Nakayama, J., Jun 12 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 5, p. 923-927 5 p.

Research output: Contribution to journalArticle

Quorum Sensing
Cyclic Peptides
Enterococcus faecalis
Staphylococcus aureus
Screening
2 Citations (Scopus)

How to infer the interactive large scale regulatory network in 'omic' studies

Komori, A., Maki, Y., Ono, I. & Okamoto, M., Jan 1 2013, In : Procedia Computer Science. 23, p. 44-52 9 p.

Research output: Contribution to journalConference article

Inverse problems
Time series
Genetic algorithms
Systems Biology
Metabolic Networks and Pathways
96 Citations (Scopus)

Hydrothermal pretreatment and enzymatic saccharification of corn stover for efficient ethanol production

Saha, B. C., Yoshida, T., Cotta, M. A. & Sonomoto, K., Jan 1 2013, In : Industrial Crops and Products. 44, p. 367-372 6 p.

Research output: Contribution to journalArticle

saccharification
corn stover
ethanol production
pretreatment
sugars
10 Citations (Scopus)
Bombyx
NADP
Ecdysone
Crystal structure
Catalysis
24 Citations (Scopus)

Identification, purification, and characterization of a novel amino acid racemase, isoleucine 2-epimerase, from Lactobacillus Species

Mutaguchi, Y., Ohmori, T., Wakamatsu, T., Doi, K. & Ohshima, T., Nov 1 2013, In : Journal of bacteriology. 195, 22, p. 5207-5215 9 p.

Research output: Contribution to journalArticle

Amino Acid Isomerases
Racemases and Epimerases
Isoleucine
Lactobacillus
Enzymes
Open Access
Lactobacillus johnsonii
rice bran
lactic acid bacteria
anaerobic conditions
Lactobacillus
17 Citations (Scopus)

Identification and characterization of novel multiple bacteriocins produced by Lactobacillus sakei D98

Sawa, N., Koga, S., Okamura, K., Ishibashi, N., Zendo, T. & Sonomoto, K., Jul 1 2013, In : Journal of Applied Microbiology. 115, 1, p. 61-69 9 p.

Research output: Contribution to journalArticle

Bacteriocins
Disulfides
Lactobacillus sakei
Listeria
Protein Sequence Analysis
12 Citations (Scopus)

Identification of a Metabolic Reaction Network from Time-Series Data of Metabolite Concentrations

Sriyudthsak, K., Shiraishi, F. & Hirai, M. Y., Jan 17 2013, In : PloS one. 8, 1, e51212.

Research output: Contribution to journalArticle

Glycolysis
Metabolites
Metabolic Networks and Pathways
Time series
time series analysis
7 Citations (Scopus)

Identification of a soluble isoform of human IL-17RA generated by alternative splicing

Sohda, M., Misumi, Y., Tashiro, K., Yamazaki, M., Saku, T. & Oda, K., Dec 1 2013, In : Cytokine. 64, 3, p. 642-645 4 p.

Research output: Contribution to journalArticle

Interleukins
Alternative Splicing
Protein Isoforms
Interleukin-17
Interleukin-17 Receptors
15 Citations (Scopus)

Identification of Key Uric Acid Synthesis Pathway in a Unique Mutant Silkworm Bombyx mori Model of Parkinson's Disease

Tabunoki, H., Ono, H., Ode, H., Ishikawa, K., Kawana, N., Banno, Y., Shimada, T., Nakamura, Y., Yamamoto, K., Satoh, J. I. & Bono, H., Jul 24 2013, In : PloS one. 8, 7, e69130.

Research output: Contribution to journalArticle

taxonomic keys
Bombyx
Parkinson disease
uric acid
Bombyx mori
8 Citations (Scopus)

Identification of thermo tolerant lactic acid bacteria isolated from silage prepared in the hot and humid climate of Southwestern Japan

Doi, K., Nishizaki, Y., Kimura, H., Kitahara, M., Fujino, Y., Ohmomo, S., Ohshima, T. & Ogata, S., Jan 1 2013, In : SpringerPlus. 2, 1, p. 1-12 12 p., 485.

Research output: Contribution to journalArticle

Silage
Climate
Random Amplified Polymorphic DNA Technique
Lactic Acid
Japan
30 Citations (Scopus)

Improved lactic acid productivity by an open repeated batch fermentation system using Enterococcus mundtii QU 25

Abdel-Rahman, M. A., Tashiro, Y., Zendo, T. & Sonomoto, K., Jan 1 2013, In : RSC Advances. 3, 22, p. 8437-8445 9 p.

Research output: Contribution to journalArticle

Lactic acid
Fermentation
Lactic Acid
Productivity
Glucose
7 Citations (Scopus)

Increased tyrosine in the brain and serum of mice by orally administering dipeptide SY

Esaki, K., Ohmori, T., Maebuchi, M., Nakamori, T., Ohshima, T. & Furuya, S., Jun 14 2013, In : Bioscience, Biotechnology and Biochemistry. 77, 4, p. 847-849 3 p.

Research output: Contribution to journalArticle

Tyrosine
Brain
Serum
Deficiency Diseases
Serine
31 Citations (Scopus)
Caspases
Molecular Weight
Molecular weight
Cells
Apoptosis
10 Citations (Scopus)

Interactions of the intact FsrC membrane histidine kinase with the tricyclic peptide inhibitor siamycin I revealed through synchrotron radiation circular dichroism

Phillips-Jones, M. K., Patching, S. G., Edara, S., Nakayama, J., Hussain, R. & Siligardi, G., Jan 14 2013, In : Physical Chemistry Chemical Physics. 15, 2, p. 444-447 4 p.

Research output: Contribution to journalArticle

Circular dichroism spectroscopy
histidine
Micelles
Synchrotron radiation
Histidine
3 Citations (Scopus)

Interactive network analysis of the plasma amino acids profile in a mouse model of hyperglycemia

Tanaka, T., Mochida, T., Maki, Y., Shiraki, Y., Mori, H., Matsumoto, S., Shimbo, K., Ando, T., Nakamura, K., Endo, F. & Okamoto, M., Jan 1 2013, In : SpringerPlus. 2, 1, p. 1-12 12 p., 287.

Research output: Contribution to journalArticle

Electric network analysis
Plasmas
Amino Acids
Glycine
Alanine
1 Citation (Scopus)

In vitro immunization of Epstein-Barr virus-immortalized B cells augments antigen-specific antibody production

Harada, G., Matsumoto, S. E., Yamashita, M., Fujii, K., Shirahata, S. & Katakura, Y., Dec 1 2013, In : Cytotechnology. 65, 6, p. 979-983 5 p.

Research output: Contribution to journalArticle

Immunization
Antigens
Human Herpesvirus 4
Viruses
Antibodies
13 Citations (Scopus)

Involvement of the novel two-component nsrrs and lcrrs systems in distinct resistance pathways against nisin a and nukacin isk-1 in streptococcus mutans

Kawada-Matsuo, M., Oogai, Y., Zendo, T., Nagao, J., Shibata, Y., Yamashita, Y., Ogura, Y., Hayashi, T., Sonomoto, K. & Komatsuzawa, H., Aug 1 2013, In : Applied and environmental microbiology. 79, 15, p. 4751-4755 5 p.

Research output: Contribution to journalArticle

Nisin
Streptococcus mutans
nisin
Bacteriocins
bacteriocins