Research Output 1979 2020

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Conference contribution
2016

Bioalcohol production by metabolically engineered cyanobacteria using photobioreactor

Horiuchi, J. I., Kumada, Y., Hanai, T., Hirokawa, Y., Murakami, A., Konishi, M., Hashi, R. & Kitamura, T., Jan 1 2016, Metabolic Engineering 11. AIChE, p. 410-411 2 p. (Metabolic Engineering 11).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Synthetic quorum sensing as a tunable cell density sensor-regulator for dynamic metabolic engineering

Hanai, T. & Soma, Y., Jan 1 2016, Metabolic Engineering 11. AIChE, p. 181-182 2 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2015
1 Citation (Scopus)

Evolutionary design of oscillatory genetic networks in silico

Naruse, Y., Hamada, H., Hanai, T. & Iba, H., Sep 10 2015, 2015 IEEE Congress on Evolutionary Computation, CEC 2015 - Proceedings. Institute of Electrical and Electronics Engineers Inc., p. 1596-1603 8 p. 7257078

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Genetic Network
Design Method
Robustness
Two-stage Design
Parameter Perturbation
2013

Japan partnership toward the classical biological control of Megacopta cribraria

Jones, W. A., Takasu, K., Ruberson, J. R. & Tashiro, K., 2013, Entomology 2013: : P-IE Section Symposium: Solutions for Invasive Insect Pests in a Connected World.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

2011

WinBEST-KIT for analyzing multilayer and multicellular systems

Sekiguchi, T. & Okamoto, M., 2011, 2011 IEEE International Conference on Systems Biology, ISB 2011. p. 161-166 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Multilayers
Metabolic Networks and Pathways
Kinetics
Biochemical engineering
Metabolic engineering
2010

Adhesion of Escherichia coli onto oxide minerals - extended dlvo theory and Flotation behaviour

Farahat, M., Hirajima, T., Sasaki, K. & Doi, K., 2010, XXV International Mineral Processing Congress 2010, IMPC 2010. Vol. 3. p. 1841-1851 11 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Oxide minerals
Flotation
adhesion
Escherichia coli
Quartz

Development of sustainable society through efficient biotechnological production of optically active L-lactic acid from cellulose-derived sugars

Abdel-Rahman, M. A., Zendo, T., Sonomoto, K. & Tashiro, Y., 2010, ICEEA 2010 - 2010 International Conference on Environmental Engineering and Applications, Proceedings. p. 312-316 5 p. 5596150

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lactic acid
Sugars
Cellulose
Glucose
Enzyme inhibition

Optimization of fermentation conditions for high L-lactic acid production from cellobiose by Entercoccus mundtii QU 25: Impact of pH control and temperature on cell growth and changes in metabolites

Abdelrahman, M. A. S. M., Zendo, T., Sonomoto, K. & Tashiro, Y., Nov 24 2010, ICEEA 2010 - 2010 International Conference on Environmental Engineering and Applications, Proceedings. p. 307-311 5 p. 5596153. (ICEEA 2010 - 2010 International Conference on Environmental Engineering and Applications, Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cell growth
Lactic acid
Metabolites
Fermentation
Temperature
2009

Development of computer-aided diagnostic system for peritoneal dialysis: NAVI light™

Hamada, H., Karino, T., Namoto, S., Yamashita, A. C., Ishizaki, M. & Okamoto, M., Dec 1 2009, World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics. 4 ed. p. 1818-1821 4 p. (IFMBE Proceedings; vol. 25, no. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Dialysis
Ultrafiltration
Urea
Creatinine
Kinetic parameters

Mathematical modeling for morphogenesis of leaf with employing cell automata and reaction-diffusion equation

Ishii, K., Hamada, H. & Okamoto, M., 2009, Proceedings of the 14th International Symposium on Artificial Life and Robotics, AROB 14th'09. p. 85-88 4 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Elongation
Numerical analysis
Automata theory
Mathematical models
Cellular automata

Mathematical modeling for spatiotemporal development of leaf primordium

Ishii, K., Hamada, H. & Okamoto, M., Oct 13 2009, Proceedings of the International Conference on Complex, Intelligent and Software Intensive Systems, CISIS 2009. p. 813-818 6 p. 5066883

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Automata theory
Mathematical models
Cellular automata
Availability
1 Citation (Scopus)

Numerical simulation for synchronization of excitatory action between beating cells

Hamada, H., Tada, A., Iwamoto, K. & Okamoto, M., Dec 1 2009, World Congress on Medical Physics and Biomedical Engineering: Image Processing, Biosignal Processing, Modelling and Simulation, Biomechanics. 4 ed. p. 1857-1860 4 p. (IFMBE Proceedings; vol. 25, no. 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Synchronization
Computer simulation
Simulators
Mathematical models
Kinetics
11 Citations (Scopus)

Unraveling dynamic activities of autocrine pathways that control drug-response transcriptome networks

Tamada, Y., Araki, H., Imoto, S., Nagasaki, M., Doi, A., Nakanishi, Y., Tomiyasu, Y., Yasuda, K., Dunmore, B., Sanders, D., Humphreys, S., Print, C., Charnock-Jones, D. S., Tashiro, K., Kuhara, S. & Miyano, S., Dec 1 2009, Pacific Symposium on Biocomputing 2009, PSB 2009. p. 251-263 13 p. (Pacific Symposium on Biocomputing 2009, PSB 2009).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Drug and Narcotic Control
Transcriptome
Proteins
Pharmaceutical Preparations
Fenofibrate
2008

Blind spot of G1/S checkpoint: G1/S checkpoint is invaded by DNA-damage after R-point

Iwamoto, K., Tashima, Y., Hamada, H., Okamoto, M. & Eguchi, Y., Dec 1 2008, IASTED International Symposium on Computational Biology and Bioinformatics, CBB 2008. p. 241-246 6 p. (IASTED International Symposium on Computational Biology and Bioinformatics, CBB 2008).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Optic Disk
DNA Damage
DNA
G1 Phase
Cells
1 Citation (Scopus)

Efficient inferring method of genetic interactions based on time-series of gene expression profile

Nakatsui, M., Ueda, T., Maki, Y., Ono, I. & Okamoto, M., Dec 1 2008, Proceedings of the 13th International Symposium on Artificial Life and Robotics, AROB 13th'08. p. 71-76 6 p. (Proceedings of the 13th International Symposium on Artificial Life and Robotics, AROB 13th'08).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene expression
Time series
Microarrays
Inverse problems
DNA
2007
1 Citation (Scopus)

A bio-inspired adaptive routing based on enzymatic feedback control mechanism in metabolic networks

Nozoe, T., Kawauchi, T. & Okamoto, M., Dec 1 2007, IMECS 2007 - International MultiConference of Engineers and Computer Scientists 2007. p. 1361-1365 5 p. (Lecture Notes in Engineering and Computer Science; vol. 2).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Routing algorithms
Feedback control
Feedback
Complex networks
Adaptive algorithms
2 Citations (Scopus)

Design of bio-inspired fault-tolerant adaptive routing based on enzymatic feedback control in the cell: Towards averaging load balance in the network

Iwasaki, A., Nozoe, T., Kawauchi, T. & Okamoto, M., Dec 1 2007, Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007. p. 845-850 6 p. 4524217. (Proceedings of the Frontiers in the Convergence of Bioscience and Information Technologies, FBIT 2007).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Routing algorithms
Feedback control
Fault tolerance
Internet
Feedback

Integrated comprehensive workbench for systems biology: Inference of genetic interaction and systems analysis of metabolic pathways

Nakatsui, M., Maki, Y., Sekiguchi, T. & Okamoto, M., 2007, WMSCI 2007 - The 11th World Multi-Conference on Systemics, Cybernetics and Informatics, Jointly with the 13th International Conference on Information Systems Analysis and Synthesis, ISAS 2007 - Proc.. Vol. 4. p. 7-12 6 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Systems analysis
Kinetic parameters
Dynamic response
Identification (control systems)
Scanning
2006
3 Citations (Scopus)

Biologically inspired adaptive routing by mimicking enzymic feedback control mechanism in the cell

Kawauchi, T., Nozoe, T. & Okamoto, M., Jun 14 2006, Biologically Inspired Approaches to Advanced Information Technology - Second International Workshop, BioADIT 2006. p. 371-378 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 3853 LNCS).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Adaptive Routing
Routing algorithms
Feedback Control
Feedback control
Routing Algorithm
26 Citations (Scopus)

Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles

Imoto, S., Tamada, Y., Araki, H., Yasuda, K., Print, C. G., Charnock-Jones, S. D., Sanders, D., Savoie, C. J., Tashiro, K., Kuhara, S. & Miyano, S., 2006, Proceedings of the Pacific Symposium on Biocomputing 2006, PSB 2006. p. 559-571 13 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Gene Regulatory Networks
RNA
Genes
Genome
Gene Knockdown Techniques

Imaging technology of three dimensional distribution for sugar chain on single living cell-membrane

Yamamoto, K., Ishimaru, I., Fujii, Y., Yasokawa, T., Ishizaki, K., Yoshida, M., Takegawa, K., Tanaka, N., Kuriyama, S., Masaki, T. & Nakai, S., Dec 1 2006, Optomechatronic Actuators, Manipulation, and Systems Control. 63740L. (Proceedings of SPIE - The International Society for Optical Engineering; vol. 6374).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Cell membranes
sugars
Sugars
Membrane
Imaging
2004
7 Citations (Scopus)

An evolutionary algorithm taking account of mutual interactions among substances for inference of genetic networks

Ono, I., Ono, N., Seike, Y., Nakatsui, M., Morishita, R. & Okamoto, M., 2004, Proceedings of the 2004 Congress on Evolutionary Computation, CEC2004. Vol. 2. p. 2060-2067 8 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Evolutionary algorithms
2003
8 Citations (Scopus)

A framework of grid-oriented genetic algorithms for large-scale optimization in bioinformatics

Imade, H., Morishita, R., Ono, I., Ono, N. & Okamoto, M., 2003, 2003 Congress on Evolutionary Computation, CEC 2003 - Proceedings. IEEE Computer Society, Vol. 1. p. 623-630 8 p. 1299634

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Large-scale Optimization
Bioinformatics
Genetic algorithms
Genetic Algorithm
Grid
83 Citations (Scopus)

Combining microarrays and biological knowledge for estimating gene networks via Bayesian networks

Imoto, S., Higuchi, T., Goto, T., Tashiro, K., Kuhara, S. & Miyano, S., Jan 1 2003, Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003. Institute of Electrical and Electronics Engineers Inc., p. 104-113 10 p. 1227309. (Proceedings of the 2003 IEEE Bioinformatics Conference, CSB 2003).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bayesian networks
Microarrays
Genes
Proteins
Gene expression
25 Citations (Scopus)

Finding multiple solutions based on an evolutionary algorithm for inference of genetic networks by S-system

Morishita, R., Imade, H., Ono, L., Ono, N. & Okamoto, M., 2003, 2003 Congress on Evolutionary Computation, CEC 2003 - Proceedings. IEEE Computer Society, Vol. 1. p. 615-622 8 p. 1299633

Research output: Chapter in Book/Report/Conference proceedingConference contribution

S-system
Genetic Network
Multiple Solutions
Network Structure
Evolutionary algorithms
2002
15 Citations (Scopus)

Bayesian network and nonparametric heteroscedastic regression for nonlinear modeling of genetic network

Imoto, S., Sunyong, K., Goto, T., Aburatani, S., Tashiro, K., Kuhara, S. & Miyano, S., Jan 1 2002, Proceedings - IEEE Computer Society Bioinformatics Conference, CSB 2002. Institute of Electrical and Electronics Engineers Inc., p. 219-227 9 p. 1039344

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Bayesian networks
Gene expression
Genes
Microarrays
Gene Expression
1995

Knowledge-based rules for control of the sake (Ginjoshu) making process and their application in fuzzy control

Honda, H., Hanai, T., Nishida, Y., Fukaya, I. & Kobayashi, T., Jan 1 1995, Advances in Fuzzy Logic, Neural Networks and Genetic Algorithms - IEEE/Nagoya-University World Wisepersons Workshop, 1994, Selected Papers. Furuhashi, T. (ed.). Springer Verlag, p. 101-110 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Fermentation
Knowledge-based
Fuzzy control
Fuzzy Control
Temperature Control
1990
1 Citation (Scopus)

Development of biochemical threshold-logic device capable of storing short-memory

Okamoto, M., Dec 1 1990, Biomedical Engineering Perspectives: Health Care Technologies for the 1990's and Beyond. pt 4 ed. Publ by IEEE, p. 1770-1771 2 p. (Proceedings of the Annual Conference on Engineering in Medicine and Biology; no. pt 4).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Threshold logic
Logic devices
Data storage equipment
Enzymes
Switching circuits
1984
3 Citations (Scopus)

IMMOBILIZATION OF PLANT CELLS AND ITS APPLICATION TO PIGMENT PRODUCTION.

Tanaka, A., Sonomoto, K., Usui, N., Nakajima, H., Fukui, S., Sato, F. & Yamada, Y., Dec 1 1984, Unknown Host Publication Title. Verlag Chemie, p. 287-291 5 p.

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Pigments
Cells
Synthetic resins
Polysaccharides
Nutrients
1982
3 Citations (Scopus)

ESTER EXCHANGE OF TRIGLYCERIDE BY ENTRAPPED LIPASE IN ORGANIC SOLVENT.

Yokozeki, K., Tanaka, T., Yamanaka, S., Takinami, T., Hirose, Y., Sonomoto, K., Tanaka, A. & Fukui, S., Dec 1 1982, Enzyme Engineering: Proceedings of the International Enzyme Engineering Conference. Plenum Press, p. 151-152 2 p. (Enzyme Engineering: Proceedings of the International Enzyme Engineering Conference; vol. 6).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Lipases
Organic solvents
Esters
Triglycerides