Research Output 1980 2019

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2019
1 Citation (Scopus)

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

Matsunami, M., Suzuki, M., Haramoto, Y., Fukui, A., Inoue, T., Yamaguchi, K., Uchiyama, I., Mori, K., Tashiro, K., Ito, Y., Takeuchi, T., Suzuki, K. I. T., Agata, K., Shigenobu, S. & Hayashi, T., Jun 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 3, p. 217-229 13 p.

Research output: Contribution to journalArticle

Open Access
Pleurodeles
Salamandridae
Developmental Biology
Transcriptome
Regeneration
Open Access
glutathione dehydrogenase (ascorbate)
Nilaparvata lugens
Oxidative stress
Glutathione Reductase
Glutathione Transferase

BELL1-like homeobox genes regulate inflorescence architecture and meristem maintenance in rice

Ikeda, T., Tanaka, W., Toriba, T., Suzuki, C., Maeno, A., Tsuda, K., Shiroishi, T., Kurata, T., Sakamoto, T., Murai, M., Matsusaka, H., Kumamaru, T. & Hirano, H. Y., May 1 2019, In : Plant Journal. 98, 3, p. 465-478 14 p.

Research output: Contribution to journalArticle

Inflorescence
homeotic genes
Meristem
Homeobox Genes
meristems

Carnosine induces intestinal cells to secrete exosomes that activate neuronal cells

Sugihara, Y., Onoue, S., Tashiro, K., Sato, M., Hasegawa, T. & Katakura, Y., May 1 2019, In : PloS one. 14, 5, e0217394.

Research output: Contribution to journalArticle

Open Access
exosomes
Carnosine
Exosomes
carnosine
neurons

Catechol O-methyltransferase homologs in Schizosaccharomyces pombe are response factors to alkaline and salt stress

Tominaga, A., Higuchi, Y., Mori, H., Akai, M., Suyama, A., Yamada, N. & Takegawa, K., Jun 18 2019, In : Applied Microbiology and Biotechnology. 103, 12, p. 4881-4887 7 p.

Research output: Contribution to journalArticle

Catechol O-Methyltransferase
Schizosaccharomyces
Salts
Microarray Analysis
Oligonucleotide Array Sequence Analysis

Cellulase productivity of Trichoderma reesei mutants developed in Japan varies with varying pH conditions

Hirasawa, H., Shioya, K., Mori, K., Tashiro, K., Aburatani, S., Shida, Y., Kuhara, S. & Ogasawara, W., Jan 1 2019, In : Journal of Bioscience and Bioengineering.

Research output: Contribution to journalArticle

Trichoderma
Cellulase
Japan
Productivity
Enzymes

Chemo-enzymatic synthesis of p-nitrophenyl β-D-galactofuranosyl disaccharides from Aspergillus sp. fungal-type galactomannan

Ota, R., Okamoto, Y., Vavricka, C. J., Oka, T., Matsunaga, E., Takegawa, K., Kiyota, H. & Izumi, M., Feb 1 2019, In : Carbohydrate Research. 473, p. 99-103 5 p.

Research output: Contribution to journalArticle

Disaccharides
Aspergillus
Polysaccharides
Glycoconjugates
Cell Wall

Complete genome sequence of enterococcus faecium qu50, a thermophilic lactic acid bacterium capable of metabolizing xylose

Abe, K., Kanesaki, Y., Abdel-Rahman, M. A., Watanabe, S., Zendo, T., Chibazakura, T., Shimizu-Kadota, M., Sonomoto, K. & Yoshikawa, H., May 23 2019, In : Microbiology Resource Announcements. 8, 21, e0041319.

Research output: Contribution to journalArticle

Open Access
Enterococcus faecium
Xylose
Lactic Acid
Genome
Bacteria
1 Citation (Scopus)

Comprehensive behavioral analysis and quantification of brain free amino acids of C57BL/6J congenic mice carrying the 1473G allele in tryptophan hydroxylase-2

Koshimizu, H., Hirata, N., Takao, K., Toyama, K., Ichinose, T., Furuya, S. & Miyakawa, T., Mar 1 2019, In : Neuropsychopharmacology Reports. 39, 1, p. 56-60 5 p.

Research output: Contribution to journalArticle

Congenic Mice
Tryptophan Hydroxylase
Serotonin
Alleles
Amino Acids

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., Mar 1 2019, In : Review of Scientific Instruments. 90, 3, 035106.

Research output: Contribution to journalArticle

Continuous cell culture
silicones
readers
Silicones
Cell culture
Lactic acid
Triticum
Lactic Acid
Bacteria
Yeast

Dynamics of microbial populations responsible for biodegradation during the full-scale treatment of palm oil mill effluent

Mohd-Nor, D., Ramli, N., Sharuddin, S. S., Hassan, M. A., Mustapha, N. A., Ariffin, H., Sakai, K., Tashiro, Y., Shirai, Y. & Maeda, T., Jan 1 2019, In : Microbes and Environments. 34, 2, p. 121-128 8 p.

Research output: Contribution to journalArticle

Open Access
oil mill effluents
biodegradation
acetic acid
mill
methanogens

Effect of high temperature on starch biosynthetic enzymes and starch structure in japonica rice cultivar ‘Akitakomachi’ (Oryza sativa L.) endosperm and palatability of cooked rice

Kato, K., Suzuki, Y., Hosaka, Y., Takahashi, R., Kodama, I., Sato, K., Kawamoto, T., Kumamaru, T. & Fujita, N., May 1 2019, In : Journal of Cereal Science. 87, p. 209-214 6 p.

Research output: Contribution to journalArticle

Endosperm
palatability
Starch
endosperm
Oryza sativa

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat

Eukaryotic peptide chain release factor 1 participates in translation termination of specific cysteine-poor prolamines in rice endosperm

Elakhdar, A., Ushijima, T., Fukuda, M., Yamashiro, N., Kawagoe, Y. & Kumamaru, T., Apr 1 2019, In : Plant Science. 281, p. 223-231 9 p.

Research output: Contribution to journalArticle

Phenylpropanolamine
Endosperm
prolamins
translation (genetics)
endosperm

Galactofuranosidase from JHA 19 Streptomyces sp. subcloning and biochemical characterization

Seničar, M., Legentil, L., Ferrières, V., Eliseeva, S. V., Petoud, S., Takegawa, K., Lafite, P. & Daniellou, R., Jul 1 2019, In : Carbohydrate Research. 480, p. 35-41 7 p.

Research output: Contribution to journalArticle

Streptomyces
Hydrolases
Enzymes
Substrate Specificity
Metabolism

Identification and expression analysis of the replication factor C protein in the silkworm, Bombyx mori

Yamamoto, K., Haque, M. R. & Saruta, F., Jan 1 2019, In : Journal of Insect Biotechnology and Sericology. 88, 1, p. 17-20 4 p.

Research output: Contribution to journalArticle

Replication Protein C
Bombyx
DNA replication
Bombyx mori
silkworms
1 Citation (Scopus)
Enterobacter
Bombyx
Proteins
Genes
Plasmids
Morus
Bombyx
nitrogen metabolism
uric acid
silkworms

Identification of polyphenols that repair the ultraviolet-B-induced DNA damage via SIRT1-dependent XPC/XPA activation

Chong, Z., Matsuo, H., Onoue, S., Yamamoto, H., Ito, H. & Katakura, Y., Mar 1 2019, In : Journal of Functional Foods. 54, p. 119-127 9 p.

Research output: Contribution to journalArticle

Polyphenols
DNA damage
DNA Damage
ultraviolet radiation
polyphenols

Isolation and characterization of spontaneous phage-resistant mutants of Lactobacillus paracasei

Sunthornthummas, S., Doi, K., Rangsiruji, A., Krajangsung, S., Sarawaneeyaruk, S. & Pringsulaka, O., May 1 2019, In : Food Control. 99, p. 114-123 10 p.

Research output: Contribution to journalArticle

Lactobacillus paracasei
bacteriophages
Bacteriophages
mutants
chemical derivatives

Koji glycosylceramide commonly contained in Japanese traditional fermented foods alters cholesterol metabolism in obese mice

Hamajima, H., Tanaka, M., Miyagawa, M., Sakamoto, M., Nakamura, T., Yanagita, T., Nishimukai, M., Mitsutake, S., Nakayama, J., Nagao, K. & Kitagaki, H., Jan 1 2019, In : Bioscience, Biotechnology and Biochemistry. 83, 8, p. 1514-1522 9 p.

Research output: Contribution to journalArticle

Obese Mice
Metabolism
Cholesterol
Food
Liver

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Surchowdhury, V., Jun 1 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
Body Temperature
heat tolerance
Leucine
body temperature
leucine
1 Citation (Scopus)

Modification of carbon metabolism in Synechococcus elongatus PCC 7942 by cyanophage-derived sigma factors for bioproduction improvement

Sawa, N., Tatsuke, T., Ogawa, A., Hirokawa, Y., Osanai, T. & Hanai, T., Feb 1 2019, In : Journal of Bioscience and Bioengineering. 127, 2, p. 256-264 9 p.

Research output: Contribution to journalArticle

Synechococcus
Sigma Factor
Metabolism
Bacteriophages
Carbon

Molecular characterization and expression analysis of a phosphoserine aminotransferase involving l-serine synthesis from silkworm, Bombyx mori

Haque, M. R., Hirowatari, A., Koyanagi, A., Ichinose, T., Abiru, M., Mohri, S., Furuya, S. & Yamamoto, K., Jun 1 2019, In : Archives of insect biochemistry and physiology. 101, 2, e21553.

Research output: Contribution to journalArticle

phosphoserine aminotransferase
silk glands
Bombyx
Silk
transaminases

Molecular structure of a 5,10-methylenetetrahydrofolate dehydrogenase from the silkworm Bombyx mori

Haque, M. R., Higashiura, A., Nakagawa, A., Hirowatari, A., Furuya, S. & Yamamoto, K., Apr 1 2019, In : FEBS Open Bio. 9, 4, p. 618-628 11 p.

Research output: Contribution to journalArticle

Open Access
Methylenetetrahydrofolate Dehydrogenase (NADP)
Bombyx
Molecular Structure
Morus
Molecular structure
Lactobacillus brevis
Glycosyltransferases
Cell Aggregation
Probiotics
Operon
1 Citation (Scopus)

Protective effect of lactobacillus reuteri KUB-AC5 against salmonella enteritidis challenge in chickens

Nakphaichit, M., Sobanbua, S., Siemuang, S., Vongsangnak, W., Nakayama, J. & Nitisinprasert, S., Jan 1 2019, In : Beneficial Microbes. 10, 1, p. 43-54 12 p.

Research output: Contribution to journalArticle

Lactobacillus reuteri
Salmonella enteritidis
Salmonella
Chickens
Salmonella Infections

Selective suppression of cell growth and programmed cell death-ligand 1 expression in HT1080 fibrosarcoma cells by low molecular weight fucoidan extract

Teruya, K., Kusumoto, Y., Eto, H., Nakamichi, N. & Shirahata, S., Jul 19 2019, In : Marine Drugs. 17, 7, 421.

Research output: Contribution to journalArticle

Open Access
Fibrosarcoma
Cell Death
Molecular Weight
Ligands
Growth

Semi-hydrolysate of paper pulp without pretreatment enables a consolidated fermentation system with in situ product recovery for the production of butanol

Zhao, T., Yasuda, K., Tashiro, Y., Darmayanti, R. F., Sakai, K. & Sonomoto, K., Apr 1 2019, In : Bioresource Technology. 278, p. 57-65 9 p.

Research output: Contribution to journalArticle

Butanols
Butenes
Fermentation
fermentation
Pulp

Synthetic microbial consortium with specific roles designated by genetic circuits for cooperative chemical production

Honjo, H., Iwasaki, K., Soma, Y., Tsuruno, K., Hamada, H. & Hanai, T., Sep 1 2019, In : Metabolic Engineering. 55, p. 268-275 8 p.

Research output: Contribution to journalArticle

Microbial Consortia
Timing circuits
Saccharification
Metabolism
Escherichia coli

Ursolic Acid Isolated from the Leaves of Loquat (Eriobotrya japonica) Inhibited Osteoclast Differentiation through Targeting Exportin 5

Tan, H., Zhao, C., Zhu, Q., Katakura, Y., Tanaka, H., Ohnuki, K. & Shimizu, K., Mar 27 2019, In : Journal of Agricultural and Food Chemistry. 67, 12, p. 3333-3340 8 p.

Research output: Contribution to journalArticle

Eriobotrya
Karyopherins
Eriobotrya japonica
ursolic acid
osteoclasts
2018

A conserved motif is essential for the correct assembly of proglutelins and for their export from the endoplasmic reticulum in rice endosperm

Tian, L., Xing, Y., Fukuda, M., Li, R., Kumamaru, T., Qian, D., Dong, X. & Qu, L. Q., Oct 12 2018, In : Journal of Experimental Botany. 69, 21, p. 5029-5043 15 p.

Research output: Contribution to journalArticle

Endosperm
Endoplasmic Reticulum
endoplasmic reticulum
endosperm
rice
1 Citation (Scopus)

Alcaligenaceae and Chromatiaceae as reliable bioindicators present in palm oil mill effluent final discharge treated by different biotreatment processes

Mohd-Nor, D., Ramli, N., Sharuddin, S. S., Hassan, M. A., Mustapha, N. A., Amran, A., Sakai, K., Shirai, Y. & Maeda, T., Dec 1 2018, In : Ecological Indicators. 95, p. 468-473 6 p.

Research output: Contribution to journalArticle

Alcaligenaceae
oil mill effluents
Chromatiaceae
bioindicator
mill

Amycolatopsis silviterrae sp. Nov., isolated from forest soil

Jamjan, W., Suriyachadkun, C., Tanasupawat, S., Sakai, K., Tashiro, Y., Okugawa, Y. & Tongpim, S., May 1 2018, In : International Journal of Systematic and Evolutionary Microbiology. 68, 5, p. 1455-1460 6 p., 002687.

Research output: Contribution to journalArticle

Amycolatopsis
forest soils
forest soil
Soil
phospholipid
1 Citation (Scopus)

Analysis of ambient pH stress response mediated by iron and copper intake in Schizosaccharomyces pombe

Higuchi, Y., Mori, H., Kubota, T. & Takegawa, K., Jan 1 2018, In : Journal of Bioscience and Bioengineering. 125, 1, p. 92-96 5 p.

Research output: Contribution to journalArticle

Schizosaccharomyces
Copper
Iron
Genes
Yeast
1 Citation (Scopus)

Analysis of differentially expressed genes and the promoters in bovine endometrium throughout estrus cycle and early pregnancy

Musavi, S. A. A., Yamashita, S., Fujihara, T., Masaka, H., Islam, M. R., Kim, S., Gotoh, T., Kawahara, M., Tashiro, K. & Yamauchi, N., Nov 1 2018, In : Animal Science Journal. 89, 11, p. 1609-1621 13 p.

Research output: Contribution to journalArticle

endometrium
Estrus
Endometrium
estrous cycle
promoter regions
9 Citations (Scopus)

An Exploratory Study on the Anti-inflammatory Effects of Fucoidan in Relation to Quality of Life in Advanced Cancer Patients

Takahashi, H., Kawaguchi, M., Kitamura, K., Narumiya, S., Kawamura, M., Tengan, I., Nishimoto, S., Hanamure, Y., Majima, Y., Tsubura, S., Teruya, K. & Shirahata, S., Jun 1 2018, In : Integrative Cancer Therapies. 17, 2, p. 282-291 10 p.

Research output: Contribution to journalArticle

Anti-Inflammatory Agents
Quality of Life
Neoplasms
Interleukin-1
Eating
4 Citations (Scopus)

Anserine/carnosine supplementation preserves blood flow in the prefrontal brain of elderly people carrying APOE e4

Ding, Q., Tanigawa, K., Kaneko, J., Totsuka, M., Katakura, Y., Imabayashi, E., Matsuda, H. & Hisatsune, T., Jun 1 2018, In : Aging and Disease. 9, 3, p. 334-345 12 p.

Research output: Contribution to journalArticle

Anserine
Carnosine
Brain
Wechsler Scales
Diffusion Tensor Imaging
4 Citations (Scopus)

Antimicrobial biodegradable food packaging impregnated with Bacteriocin 7293 for control of pathogenic bacteria in pangasius fish fillets

Woraprayote, W., Pumpuang, L., Tosukhowong, A., Zendo, T., Sonomoto, K., Benjakul, S. & Visessanguan, W., Mar 1 2018, In : LWT - Food Science and Technology. 89, p. 427-433 7 p.

Research output: Contribution to journalArticle

Pangasius
Food Packaging
fish fillets
Bacteriocins
food packaging

Application of the v-cryoplate method for the cryopreservation of silkworm embryos

Fukumori, H., Tanaka, D. & Banno, Y., Jan 1 2018, In : Journal of Insect Biotechnology and Sericology. 87, 3, p. 89-96 8 p.

Research output: Contribution to journalArticle

Vitrification
Bombyx
Cryopreservation
silkworms
cryopreservation
Reaction Network
Metabolic Network
Metabolites
Metabolic Networks and Pathways
Network Model
1 Citation (Scopus)

A reexamination on the deficiency of riboflavin accumulation in Malpighian tubules in larval translucent mutants of the silkworm, Bombyx mori

Zhang, H., Kiuchi, T., Hirayama, C., Banno, Y., Katsuma, S. & Shimada, T., Oct 1 2018, In : Genetica. 146, 4-5, p. 425-431 7 p.

Research output: Contribution to journalArticle

Riboflavin Deficiency
Malpighian Tubules
Malpighian tubules
Bombyx
Riboflavin
1 Citation (Scopus)

Assessment of genetic diversity in Egyptian barley (Hordeum vulgare L.) genotypes using SSR and SNP markers

Elakhdar, A., Kumamaru, T., Qualset, C. O., Brueggeman, R. S., Amer, K. & Capo-chichi, L., Oct 1 2018, In : Genetic Resources and Crop Evolution. 65, 7, p. 1937-1951 15 p.

Research output: Contribution to journalArticle

Hordeum
barley
Hordeum vulgare
Single Nucleotide Polymorphism
genotype
2 Citations (Scopus)

ATPase activity regulation by leader peptide processing of ABC transporter maturation and secretion protein, NukT, for lantibiotic nukacin ISK-1

Zheng, S., Nagao, J. I., Nishie, M., Zendo, T. & Sonomoto, K., Jan 1 2018, In : Applied Microbiology and Biotechnology. 102, 2, p. 763-772 10 p.

Research output: Contribution to journalArticle

Bacteriocins
ATP-Binding Cassette Transporters
Protein Sorting Signals
Adenosine Triphosphatases
Peptide Hydrolases
1 Citation (Scopus)
aerobic digestion
aerators
Thermaerobacter
aeration
bacterial communities
4 Citations (Scopus)

Azoreductase from alkaliphilic Bacillus sp. AO1 catalyzes indigo reduction

Suzuki, H., Abe, T., Doi, K. & Ohshima, T., Nov 1 2018, In : Applied Microbiology and Biotechnology. 102, 21, p. 9171-9181 11 p.

Research output: Contribution to journalArticle

Indigo Carmine
Bacillus
Polygonum
azoreductase
NAD
1 Citation (Scopus)

Catalytic Activity Profile of Polyphosphate Kinase 1 from Myxococcus xanthus

Kamatani, S., Takegawa, K. & Kimura, Y., Apr 1 2018, In : Current Microbiology. 75, 4, p. 379-385 7 p.

Research output: Contribution to journalArticle

Myxococcus xanthus
Adenosine Triphosphate
Adenosine Diphosphate
Polyphosphates
Adenosine Monophosphate

Characterisation of a diazinon-metabolising glutathione S-transferase in the silkworm Bombyx mori by X-ray crystallography and genome editing analysis

Yamamoto, K., Higashiura, A., Hirowatari, A., Yamada, N., Tsubota, T., Sezutsu, H. & Nakagawa, A., Dec 1 2018, In : Scientific reports. 8, 1, 16835.

Research output: Contribution to journalArticle

Diazinon
Bombyx
X Ray Crystallography
Insecticides
Glutathione Transferase
1 Citation (Scopus)

Characterisation of the action mechanism of a Lactococcus-specific bacteriocin, lactococcin Z

Daba, G. M., Ishibashi, N., Gong, X., Taki, H., Yamashiro, K., Lim, Y. Y., Zendo, T. & Sonomoto, K., Nov 1 2018, In : Journal of Bioscience and Bioengineering. 126, 5, p. 603-610 8 p.

Research output: Contribution to journalArticle

Lactococcus
Bacteriocins
Membranes
Carbon
Glucose