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Research Output 1981 2019

2019
1 Citation (Scopus)

A comprehensive reference transcriptome resource for the Iberian ribbed newt Pleurodeles waltl, an emerging model for developmental and regeneration biology

Matsunami, M., Suzuki, M., Haramoto, Y., Fukui, A., Inoue, T., Yamaguchi, K., Uchiyama, I., Mori, K., Tashiro, K., Ito, Y., Takeuchi, T., Suzuki, K. I. T., Agata, K., Shigenobu, S. & Hayashi, T., Jun 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 3, p. 217-229 13 p.

Research output: Contribution to journalArticle

Open Access
Pleurodeles
Salamandridae
Developmental Biology
Transcriptome
Regeneration

Author Correction: Diversity in gut bacterial community of school-age children in Asia (Scientific Reports, (2015), 5, 1, (8397), 10.1038/srep08397)

Nakayama, J., Watanabe, K., Jiang, J., Matsuda, K., Chao, S. H., Haryono, P., La-ongkham, O., Sarwoko, M. A., Sujaya, I. N., Zhao, L., Chen, K. T., Chen, Y. P., Chiu, H. H., Hidaka, T., Huang, N. X., Kiyohara, C., Kurakawa, T., Sakamoto, N., Sonomoto, K., Tashiro, K. & 9 others, Tsuji, H., Chen, M. J., Leelavatcharamas, V., Liao, C. C., Nitisinprasert, S., Rahayu, E. S., Ren, F. Z., Tsai, Y. C. & Lee, Y. K., Dec 1 2019, In : Scientific reports. 9, 1, 6530.

Research output: Contribution to journalComment/debate

Open Access
1 Citation (Scopus)

Carnosine induces intestinal cells to secrete exosomes that activate neuronal cells

Sugihara, Y., Onoue, S., Tashiro, K., Sato, M., Hasegawa, T. & Katakura, Y., May 2019, In : PloS one. 14, 5, e0217394.

Research output: Contribution to journalArticle

Open Access
exosomes
Carnosine
Exosomes
carnosine
neurons
1 Citation (Scopus)

Cellulase productivity of Trichoderma reesei mutants developed in Japan varies with varying pH conditions

Hirasawa, H., Shioya, K., Mori, K., Tashiro, K., Aburatani, S., Shida, Y., Kuhara, S. & Ogasawara, W., Sep 1 2019, In : Journal of Bioscience and Bioengineering. 128, 3, p. 264-273 10 p.

Research output: Contribution to journalArticle

Trichoderma
Cellulase
Japan
Productivity
Enzymes
1 Citation (Scopus)

Continuous cell culture monitoring using a compact microplate reader with a silicone optical technology-based spatial filter

Nakashima, Y., Kounoura, M., Malasuk, C., Nakakubo, K., Watanabe, N., Iwata, S., Morita, K., Oki, Y., Kuhara, S., Tashiro, K. & Nakanishi, Y., Mar 1 2019, In : Review of Scientific Instruments. 90, 3, 035106.

Research output: Contribution to journalArticle

Continuous cell culture
silicones
readers
Silicones
Cell culture

Effects of in ovo feeding of L-leucine on amino acids metabolism and heat-shock protein-70, and -90 mRNA expression in heat-exposed chicks

Han, G., Yang, H., Wang, Y., Zhang, R., Tashiro, K., Bungo, T., Furuse, M. & Surchowdhury, V., Mar 1 2019, In : Poultry science. 98, 3, p. 1243-1253 11 p.

Research output: Contribution to journalArticle

amino acid metabolism
leucine
broiler chickens
chicks
heat
1 Citation (Scopus)
Enterobacter
Bombyx
Proteins
Genes
Plasmids

L-Leucine increases the daily body temperature and affords thermotolerance in broiler chicks

Han, G., Yang, H., Wang, Y., Haraguchi, S., Miyazaki, T., Bungo, T., Tashiro, K., Furuse, M. & Chowdhury, V. S., Jun 2019, In : Asian-Australasian Journal of Animal Sciences. 32, 6, p. 842-848 7 p.

Research output: Contribution to journalArticle

Open Access
Body Temperature
heat tolerance
Leucine
body temperature
leucine
2018
1 Citation (Scopus)

Analysis of differentially expressed genes and the promoters in bovine endometrium throughout estrus cycle and early pregnancy

Musavi, S. A. A., Yamashita, S., Fujihara, T., Masaka, H., Islam, M. R., Kim, S., Gotoh, T., Kawahara, M., Tashiro, K. & Yamauchi, N., Nov 2018, In : Animal Science Journal. 89, 11, p. 1609-1621 13 p.

Research output: Contribution to journalArticle

endometrium
Estrus
Endometrium
estrous cycle
promoter regions
1 Citation (Scopus)
aerobic digestion
aerators
Thermaerobacter
aeration
bacterial communities

Draft genome sequence of Bacillus sp. HMA207, a strain that exhibits -D-galactosidase activity to release pyruvylated galactose

Higuchi, Y., Matsufuji, H., Mori, K., Matsunaga, E., Tashiro, K. & Takegawa, K., Sep 13 2018, In : Microbiology Resource Announcements. 7, 10, e01169-18.

Research output: Contribution to journalArticle

Galactosidases
Galactose
Bacillus
Genome
Firearms
Sphingobacterium
Acetylglucosaminidase
Fucose
Oligosaccharides
Genome
2 Citations (Scopus)

Genomic sequence of Saccharomyces cerevisiae BAW-6, a yeast strain optimal for brewing barley shochu

Kajiwara, Y., Mori, K., Tashiro, K., Higuchi, Y., Takegawa, K. & Takashita, H., Apr 1 2018, In : Genome Announcements. 6, 14, e00228-18.

Research output: Contribution to journalArticle

Hordeum
Citric Acid
Saccharomyces cerevisiae
Yeasts
Alcohols
2 Citations (Scopus)

Identification and characterization of a novel β-D-galactosidase that releases pyruvylated galactose

Higuchi, Y., Matsufuji, H., Tanuma, M., Arakawa, T., Mori, K., Yamada, C., Shofia, R., Matsunaga, E., Tashiro, K., Fushinobu, S. & Takegawa, K., Dec 1 2018, In : Scientific reports. 8, 1, 12013.

Research output: Contribution to journalArticle

Galactosidases
Galactose
Oligosaccharides
Bacillus
Enzymes
7 Citations (Scopus)

The habu genome reveals accelerated evolution of venom protein genes

Shibata, H., Chijiwa, T., Oda-Ueda, N., Nakamura, H., Yamaguchi, K., Hattori, S., Matsubara, K., Matsuda, Y., Yamashita, A., Isomoto, A., Mori, K., Tashiro, K., Kuhara, S., Yamasaki, S., Fujie, M., Goto, H., Koyanagi, R., Takeuchi, T., Fukumaki, Y., Ohno, M. & 4 others, Shoguchi, E., Hisata, K., Satoh, N. & Ogawa, T., Dec 1 2018, In : Scientific reports. 8, 1, 11300.

Research output: Contribution to journalArticle

venoms
snakes
genome
genes
proteins
2017
3 Citations (Scopus)

Alteration of development and gene expression induced by in ovo-nanoinjection of 3-hydroxybenzo[c]phenanthrene into Japanese medaka (Oryzias latipes) embryos

Chen, K., Tsutsumi, Y., Yoshitake, S., Qiu, X., Xu, H., Hashiguchi, Y., Honda, M., Tashiro, K., Nakayama, K., Hano, T., Suzuki, N., Hayakawa, K., Shimasaki, Y. & Oshima, Y., Jan 1 2017, In : Aquatic Toxicology. 182, p. 194-204 11 p.

Research output: Contribution to journalArticle

Oryzias
Oryzias latipes
phenanthrene
gene expression
embryo
2 Citations (Scopus)

A reconsideration of the taxonomic position of two bacterial strains isolated from Flacherie-Diseased silkworms in 1965

Iiyama, K., Morishita, M., Lee, M., Mon, H., Kusakabe, T., Tashiro, K., Akasaka, T., Yasunaga-Aoki, C. & Miyamoto, K., Jan 1 2017, In : Journal of Insect Biotechnology and Sericology. 86, 2, p. 35-41 7 p.

Research output: Contribution to journalArticle

Multilocus Sequence Typing
Enterobacter
Bombyx
silkworms
Hafnia
7 Citations (Scopus)

Bacterial community shift for monitoring the co-composting of oil palm empty fruit bunch and palm oil mill effluent anaerobic sludge

Zainudin, M. H. M., Ramli, N., Hassan, M. A., Shirai, Y., Tashiro, K., Sakai, K. & Tashiro, Y., Jun 1 2017, In : Journal of Industrial Microbiology and Biotechnology. 44, 6, p. 869-877 9 p.

Research output: Contribution to journalArticle

Composting
Palm oil
Sewage sludge
Sewage
Fruits
5 Citations (Scopus)

Characterization of a PA14 domain-containing galactofuranose-specific β-D-galactofuranosidase from Streptomyces sp.

Matsunaga, E., Higuchi, Y., Mori, K., Yairo, N., Toyota, S., Oka, T., Tashiro, K. & Takegawa, K., Jan 1 2017, In : Bioscience, Biotechnology and Biochemistry. 81, 7, p. 1314-1319 6 p.

Research output: Contribution to journalArticle

Streptomyces
Genes
Polysaccharides
Glycoconjugates
Aspergillus fumigatus
2 Citations (Scopus)

Corrigendum: Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)

Mori, K., Shirasawa, K., Nogata, H., Hirata, C., Tashiro, K., Habu, T., Kim, S., Himeno, S., Kuhara, S. & Ikegami, H., May 10 2017, In : Scientific reports. 7, 1 p.

Research output: Contribution to journalComment/debate

Open Access

Draft genome sequence of Streptomyces sp. JHA26, a strain that harbors a PA14 domain containing β-D-galactofuranosidase

Matsunaga, E., Higuchi, Y., Mori, K., Tashiro, K. & Takegawa, K., Apr 1 2017, In : Genome Announcements. 5, 15, e0019017.

Research output: Contribution to journalArticle

Streptomyces
Genome
Firearms
Genes
12 Citations (Scopus)

Identification of RAN1 orthologue associated with sex determination through whole genome sequencing analysis in fig (Ficus carica L.)

Mori, K., Shirasawa, K., Nogata, H., Hirata, C., Tashiro, K., Habu, T., Kim, S., Himeno, S., Kuhara, S. & Ikegami, H., Jan 25 2017, In : Scientific reports. 7, 41124.

Research output: Contribution to journalArticle

Carica
Ficus
Genome
Genome-Wide Association Study
Missense Mutation
8 Citations (Scopus)

Regulation of matrix metalloproteinase-1 and alpha-smooth muscle actin expression by interleukin-1 alpha and tumour necrosis factor alpha in hepatic stellate cells

Inoue, A., Obayashi, K., Sonoda, Y., Nakamura, A., Ueno, T., Kuhara, S. & Tashiro, K., Jun 1 2017, In : Cytotechnology. 69, 3, p. 461-468 8 p.

Research output: Contribution to journalArticle

Hepatic Stellate Cells
Matrix Metalloproteinase 1
Interleukin-1alpha
Smooth Muscle
Muscle
11 Citations (Scopus)
Wolbachia
Cocos
Beetles
Alphaproteobacteria
Mortality
2016
3 Citations (Scopus)

Development and evaluation of rice giant embryo mutants for high oil content originated from a high-yielding cultivar ‘Mizuhochikara’

Sakata, M., Seno, M., Matsusaka, H., Takahashi, K., Nakamura, Y., Yamagata, Y., Angeles, E. R., Mochizuki, T., Kumamaru, T., Sato, M., Enomoto, A., Tashiro, K., Kuhara, S., Satoh, H. & Yoshimura, A., Jan 1 2016, In : Breeding Science. 66, 3, p. 425-433 9 p.

Research output: Contribution to journalArticle

high-yielding varieties
Oils
Embryonic Structures
lipid content
rice
1 Citation (Scopus)

DNA microarray analysis of plant seeds irradiated by active oxygen species in oxygen plasma

Hayashi, N., Ono, R., Nakano, R., Shiratani, M., Tashiro, K., Kuhara, S., Yasuda, K. & Hagiwara, H., Jan 1 2016, In : Plasma Medicine. 6, 3-4, p. 459-471 13 p.

Research output: Contribution to journalArticle

oxygen plasma
Microarrays
Seed
seeds
gene expression

Draft genome sequence of Bacillus clausii AKU0647, a strain that produces endo-β-Nacetylglucosaminidase A

Higuchi, Y., Mori, K., Suyama, A., Huang, Y., Tashiro, K., Kuhara, S. & Takegawa, K., Jan 1 2016, In : Genome Announcements. 4, 3, e00310-16.

Research output: Contribution to journalArticle

Acetylglucosaminidase
Hydrolases
Genome
Genes
Firearms

Draft genome sequence of coccoid Lactobacillus equigenerosi NRIC 0697T isolated from the gastrointestinal tracts of healthy thoroughbreds

Toh, H., Nakano, A., Nguyen, C. T. K., Mimura, I., Arakawa, K., Tashiro, K., Kikusui, T. & Morita, H., Jan 1 2016, In : Genome Announcements. 4, 1, e01679-15.

Research output: Contribution to journalArticle

Lactobacillus
Gastrointestinal Tract
Genome
2 Citations (Scopus)

Draft genome sequence of leuconostoc mesenteroides 213m0, isolated from traditional fermented mare milk airag in bulgan aimag,Mongolia

Morita, H., Toh, H., Oshima, K., Nakano, A., Hano, C., Yoshida, S., Bolormaa, T., Burenjargal, S., Nguyen, C. T. K., Tashiro, K., Arakawa, K. & Miyamotoa, T., Jan 1 2016, In : Genome Announcements. 4, 2, e00178-16.

Research output: Contribution to journalArticle

Mongolia
Bacteriocins
Milk
Genome
Leuconostoc mesenteroides

Draft genome sequence of leuconostoc mesenteroides 406 isolated from the traditional fermented mare milk airag in Tuv Aimag,Mongolia

Morita, H., Toh, H., Oshima, K., Nakano, A., Hano, C., Yoshida, S., Nguyen, T. T. T., Wulijideligen, Tashiro, K., Arakawa, K. & Miyamoto, T., Jan 1 2016, In : Genome Announcements. 4, 2, e00166-16.

Research output: Contribution to journalArticle

Mongolia
Bacteriocins
Milk
Genome
Leuconostoc mesenteroides
1 Citation (Scopus)

Draft genome sequence of the fish pathogen Mycobacterium pseudoshottsii strain JCM15466, a species closely related to M. marinum

Hikima, J. I., Sakai, M., Aoki, T., Takeyama, H., Hawke, J., Mori, K., Tashiro, K. & Kuhara, S., Jan 1 2016, In : Genome Announcements. 4, 1, e01630-15.

Research output: Contribution to journalArticle

Bass
Mycobacterium
Fishes
Genome
1 Citation (Scopus)

Effect of oxygen plasma irradiation on gene expression in plant seeds induced by active oxygen species

Nakano, R., Tashiro, K., Aijima, R. & Hayashi, N., Jan 1 2016, In : Plasma Medicine. 6, 3-4, p. 303-313 11 p.

Research output: Contribution to journalArticle

methylation
gene expression
oxygen plasma
Gene expression
Seed
6 Citations (Scopus)

Growth enhancement and gene expression of Arabidopsis thaliana irradiated with active oxygen species

Watanabe, S., Ono, R., Hayashi, N., Shiratani, M., Tashiro, K., Kuhara, S., Inoue, A., Yasuda, K. & Hagiwara, H., Jan 1 2016, In : Japanese Journal of Applied Physics. 55, 7S2, 07LG10.

Research output: Contribution to journalArticle

gene expression
Gene expression
Plasmas
Oxygen
augmentation
8 Citations (Scopus)

Identification of miR-15b as a transformation-related factor in mantle cell lymphoma

Arakawa, F., Kimura, Y., Yoshida, N., Miyoshi, H., Doi, A., Yasuda, K., Nakajima, K., Kiyasu, J., Niino, D., Sugita, Y., Tashiro, K., Kuhara, S., Seto, M. & Ohshima, K., Feb 1 2016, In : International journal of oncology. 48, 2, p. 485-492 8 p.

Research output: Contribution to journalArticle

Mantle-Cell Lymphoma
MicroRNAs
Microarray Analysis
B-Cell Lymphoma
Paraffin

Preimplantation embryo-secreted factors modulate maternal gene expression in rat uterus

Yamagami, K., Islam, M. R., Yoshii, Y., Mori, K., Tashiro, K. & Yamauchi, N., May 1 2016, In : Cell and tissue research. 364, 2, p. 453-463 11 p.

Research output: Contribution to journalArticle

Blastocyst
Uterus
Embryonic Structures
Mothers
Gene Expression
5 Citations (Scopus)

Unique hyper-thermal composting process in Kagoshima City forms distinct bacterial community structures

Tashiro, Y., Tabata, H., Itahara, A., Shimizu, N., Tashiro, K. & Sakai, K., Nov 1 2016, In : Journal of Bioscience and Bioengineering. 122, 5, p. 606-612 7 p.

Research output: Contribution to journalArticle

Bacterial Structures
Composting
Soil
Hot Temperature
Sewage
2015
1 Citation (Scopus)

Characterization of KfrA proteins encoded by a plasmid of Paenibacillus popilliae ATCC 14706T

Iiyama, K., Mon, H., Mori, K., Mitsudome, T., Lee, J. M., Kusakabe, T., Tashiro, K., Asano, S. I. & Yasunaga-Aoki, C., Jun 1 2015, In : Meta Gene. 4, p. 29-44 16 p.

Research output: Contribution to journalArticle

Paenibacillus
Plasmids
Contagious Ecthyma
Circular DNA
Proteins

Classification method for heterogeneity in monoclonal cell population

Aburatani, S., Tashiro, K. & Kuhara, S., Sep 21 2015, In : Journal of Physics: Conference Series. 633, 1, 012077.

Research output: Contribution to journalConference article

proteome
cluster analysis
factor analysis
profiles
96 Citations (Scopus)

Diversity in gut bacterial community of school-age children in Asia

Nakayama, J., Watanabe, K., Jiang, J., Matsuda, K., Chao, S. H., Haryono, P., La-Ongkham, O., Sarwoko, M. A., Sujaya, I. N., Zhao, L., Chen, K. T., Chen, Y. P., Chiu, H. H., Hidaka, T., Huang, N. X., Kiyohara, C., Kurakawa, T., Sakamoto, N., Sonomoto, K., Tashiro, K. & 9 others, Tsuji, H., Chen, M. J., Leelavatcharamas, V., Liao, C. C., Nitisinprasert, S., Rahayu, E. S., Ren, F. Z., Tsai, Y. C. & Lee, Y. K., Jan 1 2015, In : Scientific reports. 5, 8397.

Research output: Contribution to journalArticle

Microbiota
Bifidobacterium
Japan
Prevotella
Diet
3 Citations (Scopus)

Draft genome sequence of Bifidobacterium aesculapii DSM 26737 T , isolated from feces of baby common marmoset

Toh, H., Yamazaki, Y., Tashiro, K., Kawarai, S., Oshima, K., Nakano, A., Kim, C. N. T., Mimura, I., Arakawa, K., Iriki, A., Kikusui, T. & Morita, H., Jan 1 2015, In : Genome Announcements. 3, 6, e0146315.

Research output: Contribution to journalArticle

Callithrix
Bifidobacterium
Feces
Genome
4 Citations (Scopus)

Draft genome sequence of Streptomyces sp. JHA19, a strain that possesses β-Dgalactofuranosidase activity

Matsunaga, E., Higuchi, Y., Mori, K., Tashiro, K., Kuhara, S. & Takegawa, K., Jan 1 2015, In : Genome Announcements. 3, 5, e01171-15.

Research output: Contribution to journalArticle

Firearms
Streptomyces
Japan
Soil
Genome
1 Citation (Scopus)

Draft genome sequence of thiostrepton-producing Streptomyces azureus ATCC 14921

Sakihara, K., Maeda, J., Tashiro, K., Fujino, Y., Kuhara, S., Ohshima, T., Ogata, S. & Doi, K., Jan 1 2015, In : Genome Announcements. 3, 5, e01183-15.

Research output: Contribution to journalArticle

Thiostrepton
Streptomyces
Genome
Base Composition

Erratum to: De novo sequencing and comparative analysis of expressed sequence tags from gynodioecious fig (Ficus carica L.) fruits: caprifig and common fig [Tree Genetics & Genomes, 9, (2013), 1075-1088, DOI:10.1007/s11295-013-0622-z]

Ikegami, H., Habu, T., Mori, K., Nogata, H., Hirata, C., Hirashima, K., Tashiro, K. & Kuhara, S., Dec 1 2015, In : Tree Genetics and Genomes. 11, 6, 1 p., 132.

Research output: Contribution to journalComment/debate

5 Citations (Scopus)

Galanin plays an important role in cancer invasiveness and is associated with poor prognosis in stage II colorectal cancer

Nagayoshi, K., Ueki, T., Tashiro, K., Mizuuchi, Y., Manabe, T., Araki, H., Oda, Y., Kuhara, S. & Tanaka, M., Dec 1 2015, In : Oncology reports. 33, 2, p. 539-546 8 p.

Research output: Contribution to journalArticle

Galanin
Colorectal Neoplasms
Neoplasms
Recurrence
Survival
2 Citations (Scopus)

Haptoglobin promoter polymorphism rs5472 as a prognostic biomarker for peptide vaccine efficacy in castration-resistant prostate cancer patients

Araki, H., Pang, X., Komatsu, N., Soejima, M., Miyata, N., Takaki, M., Muta, S., Sasada, T., Noguchi, M., Koda, Y., Itoh, K., Kuhara, S. & Tashiro, K., Dec 1 2015, In : Cancer Immunology, Immunotherapy. 64, 12, p. 1565-1573 9 p.

Research output: Contribution to journalArticle

Subunit Vaccines
Haptoglobins
Castration
Prostatic Neoplasms
Vaccination
9 Citations (Scopus)

Identification and characterization of a novel galactofuranose-specific β-D-galactofuranosidase from Streptomyces species

Matsunaga, E., Higuchi, Y., Mori, K., Yairo, N., Oka, T., Shinozuka, S., Tashiro, K., Izumi, M., Kuhara, S. & Takegawa, K., Sep 4 2015, In : PloS one. 10, 9, e0137230.

Research output: Contribution to journalArticle

Streptomyces
Genes
Polysaccharides
genes
16S Ribosomal RNA
8 Citations (Scopus)

Impaired ATP6V0A2 expression contributes to Golgi dispersion and glycosylation changes in senescent cells

Udono, M., Fujii, K., Harada, G., Tsuzuki, Y., Kadooka, K., Zhang, P., Fujii, H., Amano, M., Nishimura, S. I., Tashiro, K., Kuhara, S. & Katakura, Y., Nov 27 2015, In : Scientific reports. 5, 17342.

Research output: Contribution to journalArticle

Cell Aging
Glycosylation
Genes
Fluorescein-5-isothiocyanate
Diploidy
6 Citations (Scopus)

Mechanisms and consequences of carnosine-induced activation of intestinal epithelial cells

Kadooka, K., Fujii, K., Matsumoto, T., Sato, M., Morimatsu, F., Tashiro, K., Kuhara, S. & Katakura, Y., Mar 1 2015, In : Journal of Functional Foods. 13, p. 32-37 6 p.

Research output: Contribution to journalArticle

Carnosine
carnosine
epithelial cells
Epithelial Cells
Caco-2 Cells
8 Citations (Scopus)

Pyrosequencing analysis of microbial community and food-borne bacteria on restaurant cutting boards collected in Seri Kembangan, Malaysia, and their correlation with grades of food premises

Abdul-Mutalib, N. A., Amin Nordin, S., Osman, M., Ishida, N., Tashiro, K., Sakai, K., Tashiro, Y., Maeda, T. & Shirai, Y., May 4 2015, In : International Journal of Food Microbiology. 200, p. 57-65 9 p.

Research output: Contribution to journalArticle

cutting boards
Cronobacter
Restaurants
food grades
restaurants
1 Citation (Scopus)

Spatiotemporal expression of Prdm genes during Xenopus development

Eguchi, R., Yoshigai, E., Koga, T., Kuhara, S. & Tashiro, K., Aug 23 2015, In : Cytotechnology. 67, 4, p. 711-719 9 p.

Research output: Contribution to journalArticle

Xenopus
Genes
Gene Expression
Epigenomics
Cell Differentiation