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Research Output 1997 2019

  • 1446 Citations
  • 21 h-Index
  • 28 Article
  • 3 Chapter (peer-reviewed)
  • 1 Editorial
  • 1 Review article
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Article
2019

Expression of genes and proteins involved in arsenic respiration and resistance in dissimilatory arsenate-reducing Geobacter sp. strain OR-1

Tsuchiya, T., Ehara, A., Kasahara, Y., Hamamura, N. & Amachi, S., Jul 1 2019, In : Applied and environmental microbiology. 85, 14, e00763-19.

Research output: Contribution to journalArticle

Geobacter
arsenates
Arsenic
arsenate
arsenic
2018
4 Citations (Scopus)

Influence of the chemical form of antimony on soil microbial community structure and arsenite oxidation activity

Kataoka, T., Mitsunobu, S. & Hamamura, N., Jan 1 2018, In : Microbes and Environments. 33, 2, p. 214-221 8 p.

Research output: Contribution to journalArticle

antimony
arsenites
arsenite
microbial communities
microbial community
2015
7 Citations (Scopus)

Application of DNA adductomics to soil bacterium Sphingobium sp. strain KK22

Kanaly, R. A., Micheletto, R., Matsuda, T., Utsuno, Y., Ozeki, Y. & Hamamura, N., Oct 1 2015, In : MicrobiologyOpen. 4, 5, p. 841-856 16 p.

Research output: Contribution to journalArticle

Soil
Acrolein
Bacteria
DNA
Ecotoxicology
2 Citations (Scopus)

Cellular response of sinorhizobium sp. Strain A2 during arsenite oxidation

Fukushima, K., Huang, H. & Hamamura, N., Dec 22 2015, In : Microbes and Environments. 30, 4, p. 330-334 5 p.

Research output: Contribution to journalArticle

Sinorhizobium
arsenites
arsenite
arsenic
oxidation
2014
19 Citations (Scopus)

Identification of anaerobic arsenite-oxidizing and arsenate-reducing bacteria associated with an alkaline saline lake in Khovsgol, Mongolia

Hamamura, N., Itai, T., Liu, Y., Reysenbach, A. L., Damdinsuren, N. & Inskeep, W. P., Oct 1 2014, In : Environmental Microbiology Reports. 6, 5, p. 476-482 7 p.

Research output: Contribution to journalArticle

Halomonas
Mongolia
arsenites
arsenates
arsenite
2013
4 Citations (Scopus)

9,10-Phenanthrenedione biodegradation by a soil bacterium and identification of transformation products by LC/ESI-MS/MS

Kanaly, R. A. & Hamamura, N., Sep 1 2013, In : Chemosphere. 92, 11, p. 1442-1449 8 p.

Research output: Contribution to journalArticle

Biodegradation
biodegradation
Bacteria
Soil
Soils
12 Citations (Scopus)
22 Citations (Scopus)

Benz[a]anthracene biotransformation and production of ring fission products by Sphingobium sp. strain KK22

Kunihiro, M., Ozeki, Y., Nogi, Y., Hamamura, N. & Kanaly, R. A., Jul 1 2013, In : Applied and environmental microbiology. 79, 14, p. 4410-4420 11 p.

Research output: Contribution to journalArticle

Sphingomonas
biotransformation
Biotransformation
biodegradation
phenanthrene
5 Citations (Scopus)

Comparative community gene expression analysis of Aquificales-dominated geothermal springs

Hamamura, N., Meneghin, J. & Reysenbach, A. L., Apr 1 2013, In : Environmental Microbiology. 15, 4, p. 1226-1237 12 p.

Research output: Contribution to journalArticle

Aquificales
Hot Springs
hot springs
thermal spring
gene expression
33 Citations (Scopus)

Effects of petroleum mixture types on soil bacterial population dynamics associated with the biodegradation of hydrocarbons in soil environments

Hamamura, N., Ward, D. M. & Inskeep, W. P., Jul 1 2013, In : FEMS microbiology ecology. 85, 1, p. 168-178 11 p.

Research output: Contribution to journalArticle

Petroleum
Population Dynamics
Hydrocarbons
biodegradation
population dynamics
40 Citations (Scopus)

Identification of antimony-and arsenic-oxidizing bacteria associated with antimony mine tailing

Hamamura, N., Fukushima, K. & Itai, T., Jun 1 2013, In : Microbes and Environments. 28, 2, p. 257-263 7 p.

Research output: Contribution to journalArticle

antimony
arsenic
tailings
Sinorhizobium
bacterium
40 Citations (Scopus)

Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages

Takacs-Vesbach, C., Inskeep, W. P., Jay, Z. J., Herrgard, M. J., Rusch, D. B., Tringe, S. G., Kozubal, M. A., Hamamura, N., Macur, R. E., Fouke, B. W., Reysenbach, A. L., McDermott, T. R., Jennings, R. D. M., Hengartner, N. W. & Xie, G., Jan 1 2013, In : Frontiers in Microbiology. 4, MAY

Research output: Contribution to journalArticle

Metagenome
Sequence Analysis
Sulfides
citryl-CoA lyase
rRNA Genes
2011
90 Citations (Scopus)

Community ecology of hot spring cyanobacterial mats: Predominant populations and their functional potential

Klatt, C. G., Wood, J. M., Rusch, D. B., Bateson, M. M., Hamamura, N., Heidelberg, J. F., Grossman, A. R., Bhaya, D., Cohan, F. M., Kühl, M., Bryant, D. A. & Ward, D. M., Aug 1 2011, In : ISME Journal. 5, 8, p. 1262-1278 17 p.

Research output: Contribution to journalArticle

Hot Springs
Metagenomics
hot springs
community ecology
thermal spring
28 Citations (Scopus)

The membrane-associated monooxygenase in the butane-oxidizing Gram-positive bacterium Nocardioides sp. strain CF8 is a novel member of the AMO/PMO family

Sayavedra-Soto, L. A., Hamamura, N., Liu, C. W., Kimbrel, J. A., Chang, J. H. & Arp, D. J., Jun 1 2011, In : Environmental Microbiology Reports. 3, 3, p. 390-396 7 p.

Research output: Contribution to journalArticle

methane monooxygenase
Nocardioides
Gram-Positive Bacteria
Gram-positive bacteria
Mixed Function Oxygenases
2010
127 Citations (Scopus)

Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function

Inskeep, W. P., Rusch, D. B., Jay, Z. J., Herrgard, M. J., Kozubal, M. A., Richardson, T. H., Macur, R. E., Hamamura, N., Jennings, R. D. M., Fouke, B. W., Reysenbach, A. L., Roberto, F., Young, M., Schwartz, A., Boyd, E. S., Badger, J. H., Mathur, E. J., Ortmann, A. C., Bateson, M., Geesey, G. & 1 others, Frazier, M., Dec 1 2010, In : PloS one. 5, 3, e9773.

Research output: Contribution to journalArticle

Geothermal springs
Metagenome
Sulfides
microbial communities
community structure
2009
54 Citations (Scopus)

Complete and draft genome sequences of six members of the aquificales

Reysenbach, A. L., Hamamura, N., Podar, M., Griffiths, E., Ferreira, S., Hochstein, R., Heidelberg, J., Johnson, J., Mead, D., Pohorille, A., Sarmiento, M., Sehweighofer, K., Seshadri, R. & Voytek, M. A., Mar 1 2009, In : Journal of bacteriology. 191, 6, p. 1992-1993 2 p.

Research output: Contribution to journalArticle

Azores
Genome
Portugal
Calcium Carbonate
Chemotaxis
91 Citations (Scopus)

Linking microbial oxidation of arsenic with detection and phylogenetic analysis of arsenite oxidase genes in diverse geothermal environments

Hamamura, N., Macur, R. E., Korf, S., Ackerman, G., Taylor, W. P., Kozubal, M., Reysenbach, A. L. & Inskeep, W. P., Feb 1 2009, In : Environmental Microbiology. 11, 2, p. 421-431 11 p.

Research output: Contribution to journalArticle

arsenites
arsenite
Arsenic
arsenic
Aquificales
2008
38 Citations (Scopus)
Petroleum
alkane
crude oil
Genes
Alkanes
2007
137 Citations (Scopus)

Detection, diversity and expression of aerobic bacterial arsenite oxidase genes

Inskeep, W. P., Macur, R. E., Hamamura, N., Warelow, T. P., Ward, S. A. & Santini, J. M., Apr 1 2007, In : Environmental Microbiology. 9, 4, p. 934-943 10 p.

Research output: Contribution to journalArticle

arsenites
arsenite
Arsenic
arsenic
gene
117 Citations (Scopus)

Population level functional diversity in a microbial community revealed by comparative genomic and metagenomic analyses

Bhaya, D., Grossman, A. R., Steunou, A. S., Khuri, N., Cohan, F. M., Hamamura, N., Melendrez, M. C., Bateson, M. M., Ward, D. M. & Heidelberg, J. F., Dec 1 2007, In : ISME Journal. 1, 8, p. 703-713 11 p.

Research output: Contribution to journalArticle

Metagenomics
Synechococcus
functional diversity
microbial communities
microbial community
2006
118 Citations (Scopus)

Microbial population dynamics associated with crude-oil biodegradation in diverse soils

Hamamura, N., Olson, S. H., Ward, D. M. & Inskeep, W. P., Sep 1 2006, In : Applied and environmental microbiology. 72, 9, p. 6316-6324 9 p.

Research output: Contribution to journalArticle

Petroleum
Population Dynamics
biodegradation
crude oil
hydrocarbons
2005
32 Citations (Scopus)

Development of a PCR method for the detection and quantification of benzoyl-CoA reductase genes and its application to monitored natural attenuation

Hosoda, A., Kasai, Y., Hamamura, N., Takahata, Y. & Watanabe, K., Dec 1 2005, In : Biodegradation. 16, 6, p. 591-601 11 p.

Research output: Contribution to journalArticle

Natural attenuation
Coenzymes
natural attenuation
Oxidoreductases
Genes
49 Citations (Scopus)
hydrocarbon seep
Hydrocarbons
bacterial communities
acid soils
rainbow
2002
66 Citations (Scopus)
Archaeal DNA
Archaea
Groundwater
Methane
Petroleum
2001
74 Citations (Scopus)

Two Distinct Monooxygenases for Alkane Oxidation in Nocardioides sp. Strain CF8

Hamamura, N., Yeager, C. M. & Arp, D. J., 2001, In : Applied and Environmental Microbiology. 67, 3-12, p. 4992-4998 7 p.

Research output: Contribution to journalArticle

Nocardioides
Alkanes
decane
octane
Mixed Function Oxygenases
2000
32 Citations (Scopus)

Isolation and characterization of alkane-utilizing Nocardioides sp. strain CF8

Hamamura, N. & Arp, D. J., May 1 2000, In : FEMS microbiology letters. 186, 1, p. 21-26 6 p.

Research output: Contribution to journalArticle

Alkanes
Mixed Function Oxygenases
Copper
Acetylene
Carboxylic Acids
1999
78 Citations (Scopus)

Diversity in butane monooxygenases among butane-grown bacteria

Hamamura, N., Storfa, R. T., Semprini, L. & Arp, D. J., Jan 1 1999, In : Applied and environmental microbiology. 65, 10, p. 4586-4593 8 p.

Research output: Contribution to journalArticle

Mixed Function Oxygenases
Pseudomonas butanovora
Bacteria
Mycobacterium vaccae
acetylene
1997
74 Citations (Scopus)

Chloroform cometabolism by butane-grown CF8, Pseudomonas butanovora, and Mycobacterium vaccae JOB5 and methane-grown Methylosinus trichosporium OB3b

Hamamura, N., Page, C., Long, T., Semprini, L. & Arp, D. J., Sep 1 1997, In : Applied and Environmental Microbiology. 63, 9, p. 3607-3613 7 p.

Research output: Contribution to journalArticle

Pseudomonas butanovora
Methylosinus trichosporium
Mycobacterium vaccae
Methane
Mycobacterium