• Source: Scopus
  • Calculated based on no. of publications stored in Pure and citations from Scopus
1992 …2021

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  • Conference contribution

    A scale-free structure prior for Bayesian inference of Gaussian graphical models

    Maruyama, O. & Shikita, S., Dec 29 2014, Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014. Zheng, H., Hu, X. T., Wang, Y., Hao, J-K., Gilbert, D., Berrar, D., Cho, K-H. & Dubitzky, W. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 131-138 8 p. 6999141. (Proceedings - 2014 IEEE International Conference on Bioinformatics and Biomedicine, IEEE BIBM 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • DegSampler: Collapsed Gibbs sampler for detecting E3 binding sites

    Maruyama, O. & Matsuzaki, F., Dec 6 2018, Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018. Institute of Electrical and Electronics Engineers Inc., p. 1-9 9 p. 8567448. (Proceedings - 2018 IEEE 18th International Conference on Bioinformatics and Bioengineering, BIBE 2018).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • DegSampler3: Pairwise dependency model in degradation motif site prediction of substrate protein sequences

    Maruyama, O. & Matsuzaki, F., Oct 2019, Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019. Institute of Electrical and Electronics Engineers Inc., p. 11-17 7 p. 8941973. (Proceedings - 2019 IEEE 19th International Conference on Bioinformatics and Bioengineering, BIBE 2019).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Designing views in hypothesiscreator: System for assisting in discovery

    Maruyama, O., Uchida, T., Sim, K. L. & Miyano, S., Jan 1 1999, Discovery Science - 2nd International Conference, DS 1999, Proceedings. Arikawa, S. & Furukawa, K. (eds.). Springer Verlag, p. 115-127 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1721).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    8 Citations (Scopus)
  • Discovery of tree structured patterns using Markov chain Monte Carlo method

    Okamoto, Y., Koyanagi, K., Shoudai, T. & Maruyama, O., 2014, Proceedings of the 7th IADIS International Conference Information Systems 2014, IS 2014. Nunes, M. B., Rodrigues, L., Powell, P. & Isaias, P. (eds.). IADIS, p. 95-102 8 p. (Proceedings of the 7th IADIS International Conference Information Systems 2014, IS 2014).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Evaluating protein sequence signatures inferred from protein-protein interaction data by gene ontology annotations

    Maruyama, O., Hirakawa, H., Iwayanagi, T., Ishida, Y., Takeda, S., Otomo, J. & Kuhara, S., Dec 1 2008, Proceedings - IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2008. p. 417-420 4 p. 4684931

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Extracting best consensus motifs from positive and negative examples

    Tateishi, E., Maruyama, O. & Miyano, S., 1996, STACS 1996 - 13th Annual Symposium on Theoretical Aspects of Computer Science, Proceedings. Puech, C. & Reischuk, R. (eds.). Springer Verlag, p. 219-230 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1046).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Citations (Scopus)
  • Fast Algorithm for Extracting Multiple Unordered Short Motifs Using Bit Operations

    Maruyama, O., Bannai, H., Tamada, Y., Kuhara, S. & Miyano, S., 2002, Proceedings of the 6th Joint Conference on Information Sciences, JCIS 2002. Caulfield, J. H., Chen, S. H., Cheng, H. D., Duro, R., Caufield, J. H., Chen, S. H., Cheng, H. D., Duro, R. & Honavar, V. (eds.). p. 1180-1185 6 p. (Proceedings of the Joint Conference on Information Sciences; vol. 6).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • Graph inference from a walk for trees of bounded degree 3 is NP-complete

    Maruyama, O. & Miyano, S., 1995, Mathematical Foundations of Computer Science 1995 - 20th International Symposium, MFCS 1995, Proceedings. Wiedermann, J. & Hajek, P. (eds.). Springer Verlag, p. 257-266 10 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 969).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    3 Citations (Scopus)
  • Heterodimeric protein complex identification

    Maruyama, O., Dec 1 2011, 2011 ACM Conference on Bioinformatics, Computational Biology and Biomedicine, BCB 2011. p. 499-501 3 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Citations (Scopus)
  • Inferring a tree from walks

    Maruyama, O. & Miyano, S., Jan 1 1992, Mathematical Foundations of Computer Science 1992 - 17 International Symposium, Proceedings. Havel, I. M. & Koubek, V. (eds.). Springer Verlag, p. 383-391 9 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 629 LNCS).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • Infrequent, unexpected, and contrast pattern discovery from bacterial genomes by genome-wide comparative analysis

    Ikeda, D., Maruyama, O. & Kuhara, S., May 27 2013, BIOINFORMATICS 2013 - Proceedings of the International Conference on Bioinformatics Models, Methods and Algorithms. p. 308-311 4 p.

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • Learning conformation rules

    Maruyama, O., Shoudai, T., Furuichi, E., Kuhara, S. & Miyano, S., 2001, Discovery Science - 4th International Conference, DS 2001, Proceedings. Jantke, K. P. & Shinohara, A. (eds.). Springer Verlag, p. 243-257 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2226).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

  • NWE: Node-weighted expansion for protein complex prediction using random walk distances

    Maruyama, O. & Chihara, A., 2010, 2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010. p. 825-826 2 p. 5703927. (2010 IEEE International Conference on Bioinformatics and Biomedicine Workshops, BIBMW 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Citations (Scopus)
  • NWE: Node-Weighted Expansion for protein complex prediction using random walk distances

    Maruyama, O. & Chihara, A., 2010, Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010. p. 590-594 5 p. 5706634. (Proceedings - 2010 IEEE International Conference on Bioinformatics and Biomedicine, BIBM 2010).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Citations (Scopus)
  • Regularizing predicted complexes by mutually exclusive protein-protein interactions

    Maruyama, O. & Wong, L., Aug 25 2015, Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015. Pei, J., Tang, J. & Silvestri, F. (eds.). Association for Computing Machinery, Inc, p. 1068-1075 8 p. (Proceedings of the 2015 IEEE/ACM International Conference on Advances in Social Networks Analysis and Mining, ASONAM 2015).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    2 Citations (Scopus)
  • Toward drawing an atlas of hypothesis classes: Approximating a hypothesis via another hypothesis model

    Maruyama, O., Shoudai, T. & Miyano, S., 2002, Discovery Science - 5th International Conference, DS 2002, Proceedings. Lange, S., Satoh, K. & Smith, C. H. (eds.). Springer Verlag, p. 220-232 13 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2534).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    1 Citation (Scopus)
  • Toward genomic hypothesis creator: View designer for discovery

    Maruyama, O., Uchida, T., Shoudai, T. & Miyano, S., 1998, Discovery Science - 1st International Conference, DS 1998, Proceedings. Arikawa, S. & Motoda, H. (eds.). Springer Verlag, p. 105-116 12 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 1532).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    5 Citations (Scopus)
  • VML: A View Modeling Language for computational knowledge discovery

    Bannai, H., Tamada, Y., Maruyama, O. & Miyano, S., 2001, Discovery Science - 4th International Conference, DS 2001, Proceedings. Jantke, K. P. & Shinohara, A. (eds.). Springer Verlag, p. 30-44 15 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 2226).

    Research output: Chapter in Book/Report/Conference proceedingConference contribution

    4 Citations (Scopus)