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Research Output 2007 2019

  • 402 Citations
  • 10 h-Index
  • 19 Article
  • 2 Chapter
  • 1 Letter
  • 1 Review article
2019

Comparison of the sequencing bias of currently available library preparation kits for Illumina sequencing of bacterial genomes and metagenomes

Sato, M. P., Ogura, Y., Nakamura, K., Nishida, R., Gotoh, Y., Hayashi, M., Hisatsune, J., Sugai, M., Takehiko, I. & Hayashi, T., Oct 1 2019, In : DNA research : an international journal for rapid publication of reports on genes and genomes. 26, 5, p. 391-398 8 p.

Research output: Contribution to journalArticle

Open Access
Metagenome
Bacterial Genomes
Base Composition
Libraries
Metagenomics
1 Citation (Scopus)

Evaluation of SNP calling methods for closely related bacterial isolates and a novel high-accuracy pipeline: BactSNP

Yoshimura, D., Kajitani, R., Gotoh, Y., Katahira, K., Okuno, M., Ogura, Y., Hayashi, T. & Itoh, T., May 1 2019, In : Microbial Genomics. 5, 5

Research output: Contribution to journalArticle

Open Access
Single Nucleotide Polymorphism
Genome
Benchmarking
Disease Outbreaks
Bacteria

Genome sequencing verifies relapsed infection of helicobacter cinaedi

Sawada, O., Gotoh, Y., Taniguchi, T., Furukawa, S., Yoshimura, D., Sasaki, S., Shida, H., Kusunoki, Y., Yamamura, T., Furuya, K., Itoh, T., Horita, T., Hayashi, T. & Misawa, N., Jan 1 2019, In : Open Forum Infectious Diseases. 6, 5

Research output: Contribution to journalArticle

Open Access
Helicobacter Infections
Genome
Infection
Single Nucleotide Polymorphism
Clone Cells

Large-scale genome analysis of bovine commensal Escherichia coli reveals that bovine-adapted E. Coli lineages are serving as evolutionary sources of the emergence of human intestinal pathogenic strains

Arimizu, Y., Kirino, Y., Sato, M. P., Uno, K., Sato, T., Gotoh, Y., Auvray, F., Brugere, H., Oswald, E., Mainil, J. G., Anklam, K. S., Döpfer, D., Yoshino, S., Ooka, T., Tanizawa, Y., Nakamura, Y., Iguchi, A., Morita-Ishihara, T., Ohnishi, M., Akashi, K. & 2 others, Hayashi, T. & Ogura, Y., Jan 1 2019, In : Genome Research. 29, 9, p. 1495-1505 11 p.

Research output: Contribution to journalArticle

Open Access
Enteropathogenic Escherichia coli
Genome
Escherichia coli
Virulence
Enterocytes
2 Citations (Scopus)

Multi-step genomic dissection of a suspected intra-hospital helicobacter cinaedi outbreak

Gotoh, Y., Taniguchi, T., Yoshimura, D., Katsura, K., Saeki, Y., Hirabara, Y., Fukuda, M., Takajo, I., Tomida, J., Kawamura, Y., Ogura, Y., Itoh, T., Misawa, N., Okayama, A. & Hayashi, T., Jan 1 2019, In : Microbial Genomics. 5, 1, 000236.

Research output: Contribution to journalArticle

Helicobacter
Disease Outbreaks
Dissection
Genome
Bacteremia
2018

Genomic characterization of β-glucuronidase–positive escherichia coli O157:H7 producing Stx2a

Ogura, Y., Seto, K., Morimoto, Y., Nakamura, K., Sato, M. P., Gotoh, Y., Itoh, T., Toyoda, A., Ohnishi, M. & Hayashi, T., Dec 2018, In : Emerging Infectious Diseases. 24, 12, p. 2219-2227 9 p.

Research output: Contribution to journalArticle

Escherichia coli O157
Virulence
Clone Cells
Shiga-Toxigenic Escherichia coli
Diarrhea
3 Citations (Scopus)

Small RNA repertoires and their intraspecies variation in Aggregatibacter actinomycetemcomitans

Oogai, Y., Gotoh, Y., Ogura, Y., Kawada-Matsuo, M., Hayashi, T. & Komatsuzawa, H., Apr 1 2018, In : DNA Research. 25, 2, p. 207-215 9 p.

Research output: Contribution to journalArticle

Aggregatibacter actinomycetemcomitans
RNA
Intergenic DNA
Genes
Virulence
2017
2 Citations (Scopus)

Extremely low genomic diversity of Rickettsia japonica distributed in Japan

Akter, A., Ooka, T., Gotoh, Y., Yamamoto, S., Fujita, H., Terasoma, F., Kida, K., Taira, M., Nakadouzono, F., Gokuden, M., Hirano, M., Miyashiro, M., Inari, K., Shimazu, Y., Tabara, K., Toyoda, A., Yoshimura, D., Itoh, T., Kitano, T., Sato, M. P. & 5 others, Katsura, K., Mondal, S. I., Ogura, Y., Ando, S. & Hayashi, T., Jan 1 2017, In : Genome Biology and Evolution. 9, 1, p. 124-133 10 p.

Research output: Contribution to journalArticle

Rickettsia japonica
Rickettsia
tick
fever
Ticks
9 Citations (Scopus)

Population structure of escherichia coli o26: H11 with recent and repeated stx2 acquisition in multiple lineages

Ogura, Y., Gotoh, Y., Itoh, T., Sato, M. P., Seto, K., Yoshino, S., Isobe, J., Etoh, Y., Kurogi, M., Kimata, K., Maeda, E., Piérard, D., Kusumoto, M., Akiba, M., Tominaga, K., Kirino, Y., Kato, Y., Shirahige, K., Ooka, T., Ishijima, N. & 4 others, Lee, K. I., Iyoda, S., Mainil, J. G. & Hayashi, T., Nov 2017, In : Microbial Genomics. 3, 11, 000141.

Research output: Contribution to journalArticle

Escherichia coli
Enterohemorrhagic Escherichia coli
Population
Genes
Virulence
2016
24 Citations (Scopus)

Colistin-resistant mcr-1-positive pathogenic Escherichia coli in Swine, Japan, 2007-2014

Kusumoto, M., Ogura, Y., Gotoh, Y., Iwata, T., Hayashi, T. & Akiba, M., Jul 2016, In : Emerging Infectious Diseases. 22, 7, p. 1315-1317 3 p.

Research output: Contribution to journalLetter

Colistin
Japan
Swine
Escherichia coli
12 Citations (Scopus)

Emergence of a multidrug-resistant Shiga toxin-producing enterotoxigenic Escherichia coli lineage in diseased swine in Japan

Kusumoto, M., Hikoda, Y., Fujii, Y., Murata, M., Miyoshi, H., Ogura, Y., Gotoh, Y., Iwata, T., Hayashi, T. & Akiba, M., Apr 1 2016, In : Journal of Clinical Microbiology. 54, 4, p. 1074-1081 8 p.

Research output: Contribution to journalArticle

Swine Diseases
Shiga-Toxigenic Escherichia coli
Enterotoxigenic Escherichia coli
Japan
Pulsed Field Gel Electrophoresis
4 Citations (Scopus)

Genes essential for the morphogenesis of the Shiga toxin 2-transducing phage from Escherichia coli O157:H7

Mondal, S. I., Islam, M. R., Sawaguchi, A., Asadulghani, M., Ooka, T., Gotoh, Y., Kasahara, Y., Ogura, Y. & Hayashi, T., Dec 14 2016, In : Scientific reports. 6, 39036.

Research output: Contribution to journalArticle

Shiga Toxin 2
Escherichia coli O157
Essential Genes
Morphogenesis
Bacteriophages
7 Citations (Scopus)

Genetic relatedness and virulence properties of enteropathogenic Escherichia coli strains of serotype O119: H6 expressing localized adherence or localized and aggregative adherence-like patterns on HeLa cells

Garcia, B. G., Ooka, T., Gotoh, Y., Vieira, M. A. M., Yamamoto, D., Ogura, Y., Girão, D. M., Sampaio, S. C. F., Melo, A. B., Irino, K., Hayashi, T. & Gomes, T. A. T., May 1 2016, In : International Journal of Medical Microbiology. 306, 3, p. 152-164 13 p.

Research output: Contribution to journalArticle

Enteropathogenic Escherichia coli
HeLa Cells
Virulence
Escherichia coli
Biofilms
2015
22 Citations (Scopus)

Defining the genome features of Escherichia albertii, an emerging enteropathogen closely related to Escherichia coli

Ooka, T., Ogura, Y., Katsura, K., Seto, K., Kobayashi, H., Kawano, K., Tokuoka, E., Furukawa, M., Harada, S., Yoshino, S., Seto, J., Ikeda, T., Yamaguchi, K., Murase, K., Gotoh, Y., Imuta, N., Nishi, J., Gomes, T. A., Beutin, L. & Hayashi, T., Jan 1 2015, In : Genome Biology and Evolution. 7, 12, p. 3170-3179 10 p.

Research output: Contribution to journalArticle

Escherichia albertii
enteropathogens
Escherichia
genomics
genome
26 Citations (Scopus)

The Shiga toxin 2 production level in enterohemorrhagic Escherichia coli O157:H7 is correlated with the subtypes of toxin-encoding phage

Ogura, Y., Mondal, S. I., Islam, M. R., Mako, T., Arisawa, K., Katsura, K., Ooka, T., Gotoh, Y., Murase, K., Ohnishi, M. & Hayashi, T., Nov 16 2015, In : Scientific reports. 5, 16663.

Research output: Contribution to journalArticle

Shiga Toxin 2
Enterohemorrhagic Escherichia coli
Escherichia coli O157
Bacteriophages
Shiga Toxin
2012
12 Citations (Scopus)

A sensitive and simple plaque formation method for the Stx2 phage of Escherichia coli O157: H7, which does not form plaques in the standard plating procedure

Islam, M. R., Ogura, Y., Asadulghani, M., Ooka, T., Murase, K., Gotoh, Y. & Hayashi, T., May 1 2012, In : Plasmid. 67, 3, p. 227-235 9 p.

Research output: Contribution to journalArticle

Escherichia coli O157
Bacteriophages
Mitomycin
Enterohemorrhagic Escherichia coli
Agar
2010
30 Citations (Scopus)

Novel antibacterial compounds specifically targeting the essential WalR response regulator

Gotoh, Y., Doi, A., Furuta, E., Dubrac, S., Ishizaki, Y., Okada, M., Igarashi, M., Misawa, N., Yoshikawa, H., Okajima, T., Msadek, T. & Utsumi, R., Mar 1 2010, In : Journal of Antibiotics. 63, 3, p. 127-134 8 p.

Research output: Contribution to journalArticle

Bacillus subtilis
Staphylococcus aureus
Regulon
Gram-Positive Bacteria
Cell Division
163 Citations (Scopus)

Two-component signal transduction as potential drug targets in pathogenic bacteria

Gotoh, Y., Eguchi, Y., Watanabe, T., Okamoto, S., Doi, A. & Utsumi, R., Apr 1 2010, In : Current Opinion in Microbiology. 13, 2, p. 232-239 8 p.

Research output: Contribution to journalReview article

Signal Transduction
Bacteria
Virulence
Pharmaceutical Preparations
Quorum Sensing
8 Citations (Scopus)

X-Ray crystal structure of the DNA-binding domain of response regulator WalR essential to the cell viability of staphylococcus aureus and interaction with target DNA

Doi, A., Okajima, T., Gotoh, Y., Tanizawa, K. & Utsumi, R., Oct 8 2010, In : Bioscience, Biotechnology and Biochemistry. 74, 9, p. 1901-1907 7 p.

Research output: Contribution to journalArticle

Staphylococcus aureus
Cell Survival
Crystal structure
Cells
X-Rays
2008
26 Citations (Scopus)

Inhibitors targeting two-component signal transduction

Watanabe, T., Okada, A., Gotoh, Y. & Utsumi, R., Dec 1 2008, Bacterial Signal Transduction: Networks and Drug Targets. Utsumi, R. (ed.). p. 229-236 8 p. (Advances in Experimental Medicine and Biology; vol. 631).

Research output: Chapter in Book/Report/Conference proceedingChapter

Signal transduction
Signal Transduction
Anti-Bacterial Agents
Drug Discovery
Growth
17 Citations (Scopus)

Response regulator YycF essential for bacterial growth: X-ray crystal structure of the DNA-binding domain and its PhoB-like DNA recognition motif

Okajima, T., Doi, A., Okada, A., Gotoh, Y., Tanizawa, K. & Utsumi, R., Oct 15 2008, In : FEBS Letters. 582, 23-24, p. 3434-3438 5 p.

Research output: Contribution to journalArticle

Helix-Turn-Helix Motifs
Signal transduction
Nucleotide Motifs
Base Composition
Gram-Positive Bacteria
2007
33 Citations (Scopus)

Targeting Two-Component Signal Transduction: A Novel Drug Discovery System

Okada, A., Gotoh, Y., Watanabe, T., Furuta, E., Yamamoto, K. & Utsumi, R., Jan 1 2007, Two Component Signaling Systems, Part A. Academic Press Inc., p. 386-395 10 p. (Methods in Enzymology; vol. 422).

Research output: Chapter in Book/Report/Conference proceedingChapter

Signal transduction
Drug Discovery
Histidine
Signal Transduction
Phosphotransferases