• 2962 Citations
  • 29 h-Index
1994 …2020

Research output per year

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Research Output

  • 2962 Citations
  • 29 h-Index
  • 95 Article
  • 3 Review article
  • 1 Chapter
  • 1 Chapter (peer-reviewed)
2020

Evaluation of the Influence of Halogenation on the Binding of Bisphenol A to the Estrogen-Related Receptor γ

Suyama, K., Kaneko, S., Kesamaru, H., Liu, X., Matsushima, A., Kakuta, Y., Okubo, T., Kasatani, K. & Nose, T., Apr 20 2020, In : Chemical Research in Toxicology. 33, 4, p. 889-902 14 p.

Research output: Contribution to journalArticle

Structural insight into the recognition of pathogen-derived phosphoglycolipids by C-type lectin receptor DCAR

Omahdi, Z., Horikawa, Y., Nagae, M., Toyonaga, K., Imamura, A., Takato, K., Teramoto, T., Ishida, H., Kakuta, Y. & Yamasaki, S., Apr 24 2020, In : Journal of Biological Chemistry. 295, 17, p. 5807-5817 11 p.

Research output: Contribution to journalArticle

2017

Structural basis for the broad substrate specificity of the human tyrosylprotein sulfotransferase-1

Tanaka, S., Nishiyori, T., Kojo, H., Otsubo, R., Tsuruta, M., Kurogi, K., Liu, M. C., Suiko, M., Sakakibara, Y. & Kakuta, Y., Dec 1 2017, In : Scientific reports. 7, 1, 8776.

Research output: Contribution to journalArticle

6 Citations (Scopus)
2016

A rationally engineered yeast pyruvyltransferase Pvg1p introduces sialylation-like properties in neo-human-Type complex oligosaccharide

Higuchi, Y., Yoshinaga, S., Yoritsune, K. I., Tateno, H., Hirabayashi, J., Nakakita, S. I., Kanekiyo, M., Kakuta, Y. & Takegawa, K., May 19 2016, In : Scientific reports. 6, 26349.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Functional implication of archaeal homologues of human RNase P protein pair Pop5 and Rpp30

Hamasaki, M., Hazeyama, K., Iwasaki, F., Ueda, T., Nakashima, T., Kakuta, Y. & Kimura, M., Jan 1 2016, In : Journal of biochemistry. 159, 1, p. 31-40 10 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2015
1 Citation (Scopus)
1 Citation (Scopus)

On archaeal homologs of the human RNase P proteins Pop5 and Rpp30 in the hyperthermophilic archaeon Thermococcus kodakarensis

Suematsu, K., Ueda, T., Nakashima, T., Kakuta, Y. & Kimura, M., Jan 1 2015, In : Bioscience, Biotechnology and Biochemistry. 79, 6, p. 952-959 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)
2014

Characterization of putative toxin/antitoxin systems in Vibrio parahaemolyticus

Hino, M., Zhang, J., Takagi, H., Miyoshi, T., Uchiumi, T., Nakashima, T., Kakuta, Y. & Kimura, M., Jan 1 2014, In : Journal of Applied Microbiology. 117, 1, p. 185-195 11 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Characterization of the peripheral structures of archaeal RNase P RNA from Pyrococcus horikoshii OT3

Ueda, T., Yamaguchi, H., Miyanoshita, M., Nakashima, T., Kakuta, Y. & Kimura, M., Jan 27 2014, In : Journal of biochemistry. 155, 1, p. 25-33 9 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Enhancement of RNA annealing and strand displacement found in archaeal ribonuclease P proteins is conserved in Escherichia coli protein C5 and yeast protein Rpr2

Furutani, T., Hazeyama, K., Ueda, T., Tomita, S., Imai, T., Nakashima, T., Kakuta, Y. & Kimura, M., Jan 1 2014, In : Bioscience, Biotechnology and Biochemistry. 78, 10, p. 1700-1702 3 p.

Research output: Contribution to journalArticle

15 Citations (Scopus)

Tamavidin 2-HOT, a highly thermostable biotin-binding protein

Takakura, Y., Suzuki, J., Oka, N. & Kakuta, Y., Jan 10 2014, In : Journal of Biotechnology. 169, 1, p. 1-8 8 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)
2013

Crystal structure of human tyrosylprotein sulfotransferase-2 reveals the mechanism of protein tyrosine sulfation reaction

Teramoto, T., Fujikawa, Y., Kawaguchi, Y., Kurogi, K., Soejima, M., Adachi, R., Nakanishi, Y., Mishiro-Sato, E., Liu, M. C., Sakakibara, Y., Suiko, M., Kimura, M. & Kakuta, Y., Apr 11 2013, In : Nature communications. 4, 1572.

Research output: Contribution to journalArticle

25 Citations (Scopus)
6 Citations (Scopus)

The crystal structure of novel chondroitin lyase ODV-E66, a baculovirus envelope protein

Kawaguchi, Y., Sugiura, N., Kimata, K., Kimura, M. & Kakuta, Y., Dec 11 2013, In : FEBS Letters. 587, 24, p. 3943-3948 6 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2012

A distinct binding mode of archaeal ribonuclease P proteins to RNA

Ishihara, M., Nishimoto, E., Yamashita, S., Kakuta, Y. & Kimura, M., Dec 1 2012, In : Bioscience, Biotechnology and Biochemistry. 76, 12, p. 2335-2337 3 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Crystallization and X-ray diffraction analysis of chondroitin lyase from baculovirus: Envelope protein ODV-E66

Kawaguchi, Y., Sugiura, N., Onishi, M., Kimata, K., Kimura, M. & Kakuta, Y., Feb 1 2012, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 68, 2, p. 190-192 3 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Crystal structure of sulfotransferase STF9 from Mycobacterium avium.

Hossain, M. M., Moriizumi, Y., Tanaka, S., Kimura, M. & Kakuta, Y., Jan 1 2012, In : Molecular and cellular biochemistry. 361, 1-2, p. 97-104 8 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Crystal structure of the rice branching enzyme I (BEI) in complex with maltopentaose

Chaen, K., Noguchi, J., Omori, T., Kakuta, Y. & Kimura, M., Aug 3 2012, In : Biochemical and Biophysical Research Communications. 424, 3, p. 508-511 4 p.

Research output: Contribution to journalArticle

25 Citations (Scopus)

Kinetics of iterative carbohydrate transfer to polysaccharide catalyzed by chondroitin polymerase on a highly sensitive flow-type 27 MHz quartz-crystal microbalance

Mori, T., Kodera, T., Yoshimine, H., Kakuta, Y., Sugiura, N., Kimata, K. & Okahata, Y., Jun 11 2012, In : Chemistry - A European Journal. 18, 24, p. 7388-7393 6 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)

Loss-of-function mutation in bi-functional marine bacterial sialyltransferase

Kajiwara, H., Katayama, S., Kakuta, Y., Okino, N., Ito, M., Mine, T. & Yamamoto, T., Oct 1 2012, In : Bioscience, Biotechnology and Biochemistry. 76, 9, p. 1639-1644 6 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Single-molecular enzymatic elongation of hyaluronan polymers visualized by high-speed atomic force microscopy

Mori, T., Hirose, A., Hagiwara, T., Ohtsuka, M., Kakuta, Y., Kimata, K. & Okahata, Y., Dec 19 2012, In : Journal of the American Chemical Society. 134, 50, p. 20254-20257 4 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)

Structural basis for catalytic activity of a silkworm Delta-class glutathione transferase

Yamamoto, K., Usuda, K., Kakuta, Y., Kimura, M., Higashiura, A., Nakagawa, A., Aso, Y. & Suzuki, M., Oct 1 2012, In : Biochimica et Biophysica Acta - General Subjects. 1820, 10, p. 1469-1474 6 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Structural biology of the ribonuclease p in the hyperthermophilic archaeon pyrococcus horikoshii OT3

Kimura, M. & Kakuta, Y., Oct 1 2012, Microorganisms in Sustainable Agriculture and Biotechnology. Springer Netherlands, Vol. 9789400722149. p. 487-508 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

6 Citations (Scopus)

Thermodynamic analysis of a multifunctional RNA-binding protein, PhoRpp38, in the hyperthermophilic archaeon Pyrococcus horikoshii OT3

Oshima, K., Nakashima, T., Kakuta, Y., Tsumoto, K. & Kimura, M., Jun 29 2012, In : Bioscience, Biotechnology and Biochemistry. 76, 6, p. 1252-1255 4 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

The structural basis for a coordinated reaction catalyzed by a bifunctional glycosyltransferase in chondroitin biosynthesis

Sobhany, M., Kakuta, Y., Sugiura, N., Kimata, K. & Negishi, M., Oct 19 2012, In : Journal of Biological Chemistry. 287, 43, p. 36022-36028 7 p.

Research output: Contribution to journalArticle

12 Citations (Scopus)
2011

Crystallographic survey of active sites of an unclassified glutathione transferase from Bombyx mori

Kakuta, Y., Usuda, K., Nakashima, T., Kimura, M., Aso, Y. & Yamamoto, K., Dec 1 2011, In : Biochimica et Biophysica Acta - General Subjects. 1810, 12, p. 1355-1360 6 p.

Research output: Contribution to journalArticle

9 Citations (Scopus)

Crystal structure of the branching enzyme i (BEI) from Oryza sativa L with implications for catalysis and substrate binding

Noguchi, J., Chaen, K., Vu, N. T., Akasaka, T., Shimada, H., Nakashima, T., Nishi, A., Satoh, H., Omori, T., Kakuta, Y. & Kimura, M., Aug 1 2011, In : Glycobiology. 21, 8, p. 1108-1116 9 p.

Research output: Contribution to journalArticle

30 Citations (Scopus)

Molecular cloning, expression, and functional analysis of a predicted sulfotransferase STF9 from Mycobacterium avium

Hossain, M. M., Moriizumi, Y., Tanaka, S., Kimura, M. & Kakuta, Y., Apr 1 2011, In : Molecular and cellular biochemistry. 350, 1-2, p. 155-162 8 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Structural modeling of RNase P RNA of the hyperthermophilic archaeon Pyrococcus horikoshii OT3

Zwieb, C., Nakao, Y., Nakashima, T., Takagi, H., Goda, S., Andersen, E. S., Kakuta, Y. & Kimura, M., Oct 28 2011, In : Biochemical and Biophysical Research Communications. 414, 3, p. 517-522 6 p.

Research output: Contribution to journalArticle

11 Citations (Scopus)

The contribution of peripheral stem-loops to the catalytic activity of archaeal RNase P RNa from Pyrococcus horikoshii OT3

Hara, T., Terada, A., Yamaguchi, H., Nakashima, T., Kakuta, Y. & Kimura, M., May 16 2011, In : Bioscience, Biotechnology and Biochemistry. 75, 4, p. 816-819 4 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
2010

Glucuronyltransferase activity of KfiC from Escherichia coli strain K5 requires association of KfiA: KfiC and KfiA are essential enzymes for production of K5 polysaccharide, N-acetylheparosan

Sugiura, N., Baba, Y., Kawaguchi, Y., Iwatani, T., Suzuki, K., Kusakabe, T., Yamagishi, K., Kimata, K., Kakuta, Y. & Watanabe, H., Jan 15 2010, In : Journal of Biological Chemistry. 285, 3, p. 1597-1606 10 p.

Research output: Contribution to journalArticle

23 Citations (Scopus)

Structure of the newly found green turtle egg-white ribonuclease

Katekaew, S., Kuaprasert, B., Torikata, T., Kakuta, Y., Kimura, M., Yoneda, K. & Araki, T., Jul 15 2010, In : Acta Crystallographica Section F: Structural Biology and Crystallization Communications. 66, 7, p. 755-759 5 p.

Research output: Contribution to journalArticle

1 Citation (Scopus)

The structural mechanism of the inhibition of archaeal RelE toxin by its cognate RelB antitoxin

Shinohara, M., Guo, J. X., Mori, M., Nakashima, T., Takagi, H., Nishimoto, E., Yamashita, S., Tsumoto, K., Kakuta, Y. & Kimura, M., Sep 1 2010, In : Biochemical and Biophysical Research Communications. 400, 3, p. 346-351 6 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Zebrafish as a model for the study of the phase II cytosolic sulfotransferases

Liu, T. A., Bhuiyan, S., Liu, M. Y., Sugahara, T., Sakakibara, Y., Suiko, M., Yasuda, S., Kakuta, Y., Kimura, M., Williams, F. E. & Liu, M. C., Jul 1 2010, In : Current Drug Metabolism. 11, 6, p. 538-546 9 p.

Research output: Contribution to journalReview article

29 Citations (Scopus)
2009

Crystal structure of chondroitin polymerase from Escherichia coli K4

Osawa, T., Sugiura, N., Shimada, H., Hirooka, R., Tsuji, A., Shirakawa, T., Fukuyama, K., Kimura, M., Kimata, K. & Kakuta, Y., Jan 2 2009, In : Biochemical and Biophysical Research Communications. 378, 1, p. 10-14 5 p.

Research output: Contribution to journalArticle

44 Citations (Scopus)

Crystal structure of α/β-galactoside α2,3-sialyltransferase from a luminous marine bacterium, Photobacterium phosphoreum

Iwatani, T., Okino, N., Sakakura, M., Kajiwara, H., Takakura, Y., Kimura, M., Ito, M., Yamamoto, T. & Kakuta, Y., Jun 18 2009, In : FEBS Letters. 583, 12, p. 2083-2087 5 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Expression and functional analysis of a predicted atsg arylsulphatase identified from mycobacterium tuberculosis genomic data

Hossain, M. M., Kawarabayasi, Y., Kimura, M. & Kakuta, Y., Dec 1 2009, In : Journal of biochemistry. 146, 6, p. 767-769 3 p.

Research output: Contribution to journalArticle

6 Citations (Scopus)

Induced-fit type ligand binding guided by free-rotatory Leu residue present in the 7th α-helix peptide in the estrogen-related receptor γ (ERRγ)

Matsushima, A., Okada, H., Liu, X., Tokunaga, T., Teramoto, T., Kakuta, Y. & Shimohigashi, Y., 2009, Peptide Science 2008. p. 521-522

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Mechanistic insights into the hydrolysis and synthesis of ceramide by neutral ceramidase

Inoue, T., Okino, N., Kakuta, Y., Hijikata, A., Okano, H., Goda, H. M., Tani, M., Sueyoshi, N., Kambayashi, K., Matsumura, H., Kai, Y. & Ito, M., Apr 3 2009, In : Journal of Biological Chemistry. 284, 14, p. 9566-9577 12 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

On the similar spatial arrangement of active site residues in PAPS-dependent and phenolic sulfate-utilizing sulfotransferases

Teramoto, T., Adachi, R., Sakakibara, Y., Liu, M. C., Suiko, M., Kimura, M. & Kakuta, Y., Sep 17 2009, In : FEBS Letters. 583, 18, p. 3091-3094 4 p.

Research output: Contribution to journalArticle

4 Citations (Scopus)
14 Citations (Scopus)

Structural basis for the broad range substrate specificity of a novel mouse cytosolic sulfotransferase-mSULT1D1

Teramoto, T., Sakakibara, Y., Liu, M. C., Suiko, M., Kimura, M. & Kakuta, Y., Jan 30 2009, In : Biochemical and Biophysical Research Communications. 379, 1, p. 76-80 5 p.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Tamavidins - Novel avidin-like biotin-binding proteins from the Tamogitake mushroom

Takakura, Y., Tsunashima, M., Suzuki, J., Usami, S., Kakuta, Y., Okino, N., Ito, M. & Yamamoto, T., Mar 1 2009, In : FEBS Journal. 276, 5, p. 1383-1397 15 p.

Research output: Contribution to journalArticle

36 Citations (Scopus)
2008

[Novel catabolic pathway of glycosphingolipids that includes a cytosolic glucocerebrosidase, klotho-related protein (KLrP)].

Hayashi, Y., Okino, N., Kakuta, Y. & Ito, M., Sep 1 2008, In : Tanpakushitsu kakusan koso. Protein, nucleic acid, enzyme. 53, 12 Suppl, p. 1462-1467 6 p.

Research output: Contribution to journalReview article

Biochemical and crystallographic characterization of the starch branching enzyme I (BEI) from Oryza sativa L

Vu, N. T., Shimada, H., Kakuta, Y., Nakashima, T., Ida, H., Omori, T., Nishi, A., Satoh, H. & Kimura, M., Dec 1 2008, In : Bioscience, Biotechnology and Biochemistry. 72, 11, p. 2858-2866 9 p.

Research output: Contribution to journalArticle

17 Citations (Scopus)

Crystal structure and functional analysis of an archaeal chromatin protein alba from the hyperthermophilic archaeon Pyrococcus horikoshii OT3

Hada, K., Nakashima, T., Osawa, T., Shimada, H., Kakuta, Y. & Kimura, M., Apr 7 2008, In : Bioscience, Biotechnology and Biochemistry. 72, 3, p. 749-758 10 p.

Research output: Contribution to journalArticle

16 Citations (Scopus)

Crystal structure of an archaeal Ski2p-like protein from Pyrococcus horikoshii OT3

Zhang, X., Nakashima, T., Kakuta, Y., Yao, M., Tanaka, I. & Kimura, M., Jan 1 2008, In : Protein Science. 17, 1, p. 136-145 10 p.

Research output: Contribution to journalArticle

7 Citations (Scopus)

Crystal structure of mSULT1D1, a mouse catecholamine sulfotransferase

Teramoto, T., Sakakibara, Y., Inada, K., Kurogi, K., Liu, M. C., Suiko, M., Kimura, M. & Kakuta, Y., Nov 26 2008, In : FEBS Letters. 582, 28, p. 3909-3914 6 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)