Find Research Outputs

2019
2 Citations (Scopus)

Crystal Structures of Csm2 and Csm3 in the Type III-A CRISPR–Cas Effector Complex

Takeshita, D., Sato, M., Inanaga, H. & Numata, T., Feb 15 2019, In : Journal of Molecular Biology. 431, 4, p. 748-763 16 p.

Research output: Contribution to journalArticle

Clustered Regularly Interspaced Short Palindromic Repeats
CRISPR-Associated Proteins
RNA
Thermoplasma
Staphylococcus epidermidis
Stomach Neoplasms
Stomach
Histology
Retrospective Studies

Cu-Fe-Ni nano alloy particles obtained by exsolution from Cu(Ni)Fe2O4 as active anode for SOFCs

Kang, B., Matsuda, J. & Ishihara, T., Jan 1 2019, In : Journal of Materials Chemistry A. 7, 45, p. 26105-26115 11 p.

Research output: Contribution to journalArticle

Solid oxide fuel cells (SOFC)
Oxides
Anodes
Metals
Energy dispersive spectroscopy
1 Citation (Scopus)

Culture of hybrid spheroids composed of calcium phosphate materials and mesenchymal stem cells on an oxygen-permeable culture device to predict in vivo bone forming capability

Sato, T., Anada, T., Hamai, R., Shiwaku, Y., Tsuchiya, K., Sakai, S., Baba, K., Sasaki, K. & Suzuki, O., Apr 1 2019, In : Acta Biomaterialia. 88, p. 477-490 14 p.

Research output: Contribution to journalArticle

Calcium phosphate
Stem cells
Mesenchymal Stromal Cells
Cell culture
Bone

Cumulative Inflammation Could Be a Risk Factor for Intestinal Failure in Crohn’s Disease

Watanabe, Y., Miyoshi, N., Fujino, S., Takahashi, H., Haraguchi, N., Hata, T., Matsuda, C., Yamamoto, H., Doki, Y., Mori, M. & Mizushima, T., Aug 15 2019, In : Digestive Diseases and Sciences. 64, 8, p. 2280-2285 6 p.

Research output: Contribution to journalArticle

Crohn Disease
Inflammation
Incidence
Multivariate Analysis
Tumor Necrosis Factor-alpha
5 Citations (Scopus)

Cupric-superoxide complex that induces a catalytic aldol reaction-type C–C bond formation

Abe, T., Hori, Y., Shiota, Y., Ohta, T., Morimoto, Y., Sugimoto, H., Ogura, T., Yoshizawa, K. & Itoh, S., Dec 1 2019, In : Communications Chemistry. 2, 1, 12.

Research output: Contribution to journalArticle

Open Access
Superoxides
carbonyl compound
Carbonyl compounds
transition element
copper
1 Citation (Scopus)
Cuprizone
Phytoestrogens
Genistein
Demyelinating Diseases
Hippocampus

Cuprizone-treated mice, a possible model of schizophrenia, highlighting the simultaneous abnormalities of GABA, serine and glycine in hippocampus

Hayakawa, E., Ohgidani, M., Fujimura, Y., Kanba, S., Miura, D. & Kato, T. A., Aug 2019, In : Schizophrenia research. 210, p. 326-328 3 p.

Research output: Contribution to journalLetter

Cuprizone
Metabolomics
Glycine
gamma-Aminobutyric Acid
Serine
4 Citations (Scopus)

Curing cytoplasmic male sterility via TALEN-mediated mitochondrial genome editing

Kazama, T., Okuno, M., Watari, Y., Yanase, S., Koizuka, C., Tsuruta, Y., Sugaya, H., Toyoda, A., Itoh, T., Tsutsumi, N., Toriyama, K., Koizuka, N. & Arimura, S. I., Jul 1 2019, In : Nature Plants. 5, 7, p. 722-730 9 p.

Research output: Contribution to journalArticle

cytoplasmic male sterility
nucleases
transcription (genetics)
genes
male fertility
9 Citations (Scopus)

Current state of the global operational aerosol multi-model ensemble: An update from the International Cooperative for Aerosol Prediction (ICAP)

Xian, P., Reid, J. S., Hyer, E. J., Sampson, C. R., Rubin, J. I., Ades, M., Asencio, N., Basart, S., Benedetti, A., Bhattacharjee, P. S., Brooks, M. E., Colarco, P. R., da Silva, A. M., Eck, T. F., Guth, J., Jorba, O., Kouznetsov, R., Kipling, Z., Sofiev, M., Perez Garcia-Pando, C. & 6 others, Pradhan, Y., Tanaka, T., Wang, J., Westphal, D. L., Yumimoto, K. & Zhang, J., Sep 1 2019, In : Quarterly Journal of the Royal Meteorological Society. 145, S1, p. 176-209 34 p.

Research output: Contribution to journalArticle

Open Access
aerosol
prediction
optical depth
data assimilation
MODIS

Current status of projects for developing cancer-related clinical practice guidelines in Japan and recommendations for the future

Imamura, M., Hirata, K., Unno, M., Kamiya, K., Gotoh, M., Konno, H., Shibata, A., Sugihara, K., Takahashi, A., Nishiyama, M., Hakamada, K., Fukui, T., Furukawa, T., Mizushima, T., Mizuma, M., Miyata, H., Mori, M., Takemasa, I., Mizuguchi, T. & Fujiwara, T., Feb 15 2019, In : International Journal of Clinical Oncology. 24, 2, p. 189-195 7 p.

Research output: Contribution to journalArticle

Practice Guidelines
Japan
Organizations
Budgets
Guidelines

Current status of site-specific cancer registry system for the clinical researches: aiming for future contribution by the assessment of present medical care

Hirata, K., Imamura, M., Fujiwara, T., Fukui, T., Furukawa, T., Gotoh, M., Hakamada, K., Ishiguro, M., Kakeji, Y., Konno, H., Miyata, H., Mori, M., Okita, K., Sato, M., Shibata, A., Takemasa, I., Unno, M., Yokoi, K., Nishidate, T. & Nishiyama, M., Sep 13 2019, In : International Journal of Clinical Oncology. 24, 9, p. 1161-1168 8 p.

Research output: Contribution to journalArticle

Registries
Research
Neoplasms
Conflict of Interest
Informatics
1 Citation (Scopus)

Current Trends in Clinical Development of Gene and Cellular Therapeutic Products for Cancer in Japan

Nagai, S. & Sugiyama, D., Jan 1 2019, In : Clinical Therapeutics. 41, 1, p. 174-184.e3

Research output: Contribution to journalReview article

Regenerative Medicine
Japan
Oncolytic Virotherapy
Cell- and Tissue-Based Therapy
Genes

Current understanding of autoimmune encephalitis and encephalopathy

Yamasaki, R., Nov 1 2019, In : Clinical and Experimental Neuroimmunology. 10, 4, p. 209-210 2 p.

Research output: Contribution to journalEditorial

Brain Diseases
Hashimoto's encephalitis
1 Citation (Scopus)

Current understanding of bioaccessibility and bioavailability of food-derived bioactive peptides

Mine, Y. & Matsui, T., Jul 2019, In : International Journal of Food Science and Technology. 54, 7, p. 2319-2320 2 p.

Research output: Contribution to journalEditorial

Peptides
Biological Availability
bioavailability
peptides
Food
1 Citation (Scopus)

Current Update on the Molecular Biology of Cutaneous Sarcoma: Dermatofibrosarcoma Protuberans

Iwasaki, T., Yamamoto, H. & Oda, Y., Apr 1 2019, In : Current Treatment Options in Oncology. 20, 4, 29.

Research output: Contribution to journalReview article

Dermatofibrosarcoma
Sarcoma
Molecular Biology
Skin
sis Genes
1 Citation (Scopus)

CXCL12 expression in intrahepatic cholangiocarcinoma is associated with metastasis and poor prognosis

Miyata, T., Yamashita, Y. I., Yoshizumi, T., Shiraishi, M., Ohta, M., Eguchi, S., Aishima, S., Fujioka, H. & Baba, H., Oct 1 2019, In : Cancer Science. 110, 10, p. 3197-3203 7 p.

Research output: Contribution to journalArticle

Open Access
Cholangiocarcinoma
Neoplasm Metastasis
Liver
Oligonucleotide Array Sequence Analysis
Genes

Cytidine deaminase enables Toll-like receptor 8 activation by cytidine or its analogs

Furusho, K., Shibata, T., Sato, R., Fukui, R., Motoi, Y., Zhang, Y., Saitoh, S. I., Ichinohe, T., Moriyama, M., Nakamura, S. & Miyake, K., Mar 5 2019, In : International immunology. 31, 3, p. 167-173 7 p.

Research output: Contribution to journalArticle

Open Access
Toll-Like Receptor 8
Cytidine Deaminase
Cytidine
RNA
Leukocytes
4 Citations (Scopus)

Cyto/chemokine profile of in vitro scratched keratinocyte model: Implications of significant upregulation of CCL20, CXCL8 and IL36G in Koebner phenomenon

Furue, K., Ito, T., Tanaka, Y., Yumine, A., Hashimoto-Hachiya, A., Takemura, M., Murata, M., Yamamura, K., Tsuji, G. & Furue, M., Apr 2019, In : Journal of Dermatological Science. 94, 1, p. 244-251 8 p.

Research output: Contribution to journalArticle

Keratinocytes
Chemokines
Psoriasis
Up-Regulation
Benzo(a)pyrene
1 Citation (Scopus)

Cytomegalovirus reactivation is associated with increased mortality more than 100 days after allogeneic hematopoietic stem cell transplantation for adult T-cell leukemia/lymphoma

ATL Working Group of the Japan Society for Hematopoietic Cell Transplantation, May 2019, In : American Journal of Hematology. 94, 5, p. E143-E146

Research output: Contribution to journalLetter

Adult T Cell Leukemia Lymphoma
Hematopoietic Stem Cell Transplantation
Cytomegalovirus
Mortality

Cytotoxicity of trifluridine correlates with the thymidine kinase 1 expression level

Kataoka, Y., Iimori, M., Niimi, S., Tsukihara, H., Wakasa, T., Saeki, H., Oki, E., Maehara, Y. & Kitao, H., Dec 1 2019, In : Scientific reports. 9, 1, 7964.

Research output: Contribution to journalArticle

Open Access
Trifluridine
thymidine kinase 1
Colorectal Neoplasms
DNA
Clustered Regularly Interspaced Short Palindromic Repeats

DAC-less PAM4 transmitter using electro-optic polymer dual-drive Mach-Zehnder modulator with imbalanced binary driving electronics

Lu, G. W., Hong, J., Zhang, H., Qiu, F. & Yokoyama, S., Jan 1 2019, CLEO: Science and Innovations, CLEO_SI 2019. OSA - The Optical Society, (Optics InfoBase Conference Papers; vol. Part F129-CLEO_SI 2019).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electrooptical effects
Modulators
Mach number
Transmitters
Polymers

DAC-less PAM4 Transmitter Using Electro-Optic Polymer Dual-Drive Mach-Zehnder Modulator with Imbalanced Binary Driving Electronics

Lu, G. W., Hong, J., Zhang, H., Qiu, F. & Yokoyama, S., May 1 2019, 2019 Conference on Lasers and Electro-Optics, CLEO 2019 - Proceedings. Institute of Electrical and Electronics Engineers Inc., 8749666. (2019 Conference on Lasers and Electro-Optics, CLEO 2019 - Proceedings).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Electrooptical effects
transmitters
Modulators
Mach number
electro-optics

DAHA and skein algebra of surfaces: double-torus knots

Hikami, K., Oct 1 2019, In : Letters in Mathematical Physics. 109, 10, p. 2305-2358 54 p.

Research output: Contribution to journalArticle

Affine Hecke Algebra
Torus knot
algebra
Algebra
polynomials

Daigoji Temple. A Shingon Esoteric Buddhist Universe in Kyoto

Bogel, C. J., Mar 2019, In : 美術史學硏究 (Korean Journal of Art History). 301, p. 101–103

Research output: Contribution to journalBook/Film/Article review

Open Access
1 Citation (Scopus)

Dairy consumption and risk of functional disability in an elderly Japanese population: The Hisayama Study

Yoshida, D., Ohara, T., Hata, J., Shibata, M., Hirakawa, Y., Honda, T., Uchida, K., Takasugi, S., Kitazono, T., Kiyohara, Y. & Ninomiya, T., Jun 1 2019, In : American Journal of Clinical Nutrition. 109, 6, p. 1664-1671 8 p.

Research output: Contribution to journalArticle

Activities of Daily Living
Population
Independent Living
Geriatrics
Mental Competency
3 Citations (Scopus)

Danger-pose detection system using commodity wi-fi for bathroom monitoring

Zhang, Z., Ishida, S., Tagashira, S. & Fukuda, A., Feb 2 2019, In : Sensors (Switzerland). 19, 4, 884.

Research output: Contribution to journalArticle

Open Access
Toilet Facilities
commodities
Wi-Fi
Channel state information
hazards

Dappled Tiling

Derouet-Jourdan, A., Kaji, S. & Ochiai, H., 2019, Mathematical Insights into Advanced Computer Graphics Techniques. Springer Singapore, p. 59-72

Research output: Chapter in Book/Report/Conference proceedingChapter (peer-reviewed)

Data-driven spectral analysis for coordinative structures in periodic human locomotion

Fujii, K., Takeishi, N., Kibushi, B., Kouzaki, M. & Kawahara, Y., Dec 1 2019, In : Scientific reports. 9, 1, 16755.

Research output: Contribution to journalArticle

Open Access
Locomotion
Walking
Biological Phenomena
Gait

Data driven time scale in Gaussian quasi-likelihood inference

Eguchi, S. & Masuda, H., Oct 15 2019, In : Statistical Inference for Stochastic Processes. 22, 3, p. 383-430 48 p.

Research output: Contribution to journalArticle

Likelihood Inference
Quasi-likelihood
Data-driven
Model Selection
Time Scales

Decentralization is Coming

Fenwick, M. & Vermeulen, E. P. M., Aug 2019, In : Journal of the British Blockchain Association. 2, 7, p. 1-6

Research output: Contribution to journalArticle

Open Access

Decision-making dilemmas of paediatricians: A qualitative study in Japan

Sasazuki, M., Sakai, Y., Kira, R., Toda, N., Ichimiya, Y., Akamine, S., Torio, M., Ishizaki, Y., Sanefuji, M., Narama, M., Itai, K., Hara, T., Takada, H., Kizawa, Y. & Ohga, S., Aug 1 2019, In : BMJ open. 9, 8, e026579.

Research output: Contribution to journalArticle

Open Access
Decision Making
Japan
Interviews
Consensus
Professional Education
2 Citations (Scopus)

Decomposition analysis of sustainable green technology inventions in China

Fujii, H. & Managi, S., Feb 1 2019, In : Technological Forecasting and Social Change. 139, p. 10-16 7 p.

Research output: Contribution to journalArticle

Environmental technology
Patents and inventions
China
Technology
Decomposition

Decomposition of methanol on supported Pd–Au catalyst for recovery of unused waste heat at low temperature

Ishihara, T., Kong, Y., Izuka, S. & Takagaki, A., Jan 1 2019, In : journal of the japan petroleum institute. 62, 6, p. 296-302 7 p.

Research output: Contribution to journalArticle

Open Access
Waste heat
Catalyst supports
Methanol
Decomposition
Recovery

Decreased and slower diaphragmatic motion during forced breathing in severe COPD patients: Time-resolved quantitative analysis using dynamic chest radiography with a flat panel detector system

Hida, T., Yamada, Y., Ueyama, M., Araki, T., Nishino, M., Kurosaki, A., Jinzaki, M., Honda, H., Hatabu, H. & Kudoh, S., Mar 2019, In : European Journal of Radiology. 112, p. 28-36 9 p.

Research output: Contribution to journalArticle

Radiography
Chronic Obstructive Pulmonary Disease
Respiration
Thorax
Diaphragm

Decreased stimulus-driven connectivity of the primary visual cortex during visual motion stimulation in amnestic mild cognitive impairment: An fMRI study

Yamasaki, T., Aso, T., Kaseda, Y., Mimori, Y., Doi, H., Matsuoka, N., Takamiya, N., Torii, T., Takahashi, T., Ohshita, T., Yamashita, H., Doi, H., Inamizu, S., Chatani, H. & Tobimatsu, S., Oct 15 2019, In : Neuroscience Letters. 711, 134402.

Research output: Contribution to journalArticle

Photic Stimulation
Visual Cortex
Alzheimer Disease
Magnetic Resonance Imaging
Parietal Lobe

Decreased stress-induced depression-like behavior in lactating rats is associated with changes in the hypothalamic-pituitary-adrenal axis, brain monoamines, and brain amino acid metabolism

Hamada, M., Nishigawa, T., Maesono, S., Aso, K., Ikeda, H. & Furuse, M., Jul 4 2019, In : Stress. 22, 4, p. 482-491 10 p.

Research output: Contribution to journalArticle

Depression
Amino Acids
Corticosterone
Brain
Prefrontal Cortex
1 Citation (Scopus)

Decreasing the operating voltage of a polymer-stabilized blue phase based on intermolecular affinity

Yoshizawa, D., Okumura, Y., Yamamoto, J. & Kikuchi, H., Jul 1 2019, In : Polymer Journal. 51, 7, p. 667-673 7 p.

Research output: Contribution to journalArticle

Polymers
Electric potential
Doping (additives)
Liquid crystals
Isosorbide
11 Citations (Scopus)

Dedifferentiation process driven by TGF-beta signaling enhances stem cell properties in human colorectal cancer

Nakano, M., Kikushige, Y., Miyawaki, K., Kunisaki, Y., Mizuno, S., Takenaka, K., Tamura, S., Okumura, Y., Ito, M., Ariyama, H., Kusaba, H., Nakamura, M., Maeda, T., Baba, E. & Akashi, K., Feb 7 2019, In : Oncogene. 38, 6, p. 780-793 14 p.

Research output: Contribution to journalArticle

Neoplastic Stem Cells
Transforming Growth Factor beta
Colorectal Neoplasms
Stem Cells
Organoids
7 Citations (Scopus)

DeepCT: Tomographic Combinatorial Testing for Deep Learning Systems

Ma, L., Juefei-Xu, F., Xue, M., Li, B., Li, L., Liu, Y. & Zhao, J., Mar 15 2019, SANER 2019 - Proceedings of the 2019 IEEE 26th International Conference on Software Analysis, Evolution, and Reengineering. Shihab, E., Lo, D. & Wang, X. (eds.). Institute of Electrical and Electronics Engineers Inc., p. 614-618 5 p. 8668044. (SANER 2019 - Proceedings of the 2019 IEEE 26th International Conference on Software Analysis, Evolution, and Reengineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Learning systems
Testing
Deep learning

Deep False-Name-Proof Auction Mechanisms

Sakurai, Y., Oyama, S., Guo, M. & Yokoo, M., Jan 1 2019, PRIMA 2019: Principles and Practice of Multi-Agent Systems - 22nd International Conference, Proceedings. Baldoni, M., Dastani, M., Liao, B., Sakurai, Y. & Zalila Wenkstern, R. (eds.). Springer, p. 594-601 8 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 11873 LNAI).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Auctions
Network architecture
Multi agent systems
Strategy-proofness
Neural networks
7 Citations (Scopus)

Deephunter: A coverage-guided fuzz testing framework for deep neural networks

Xie, X., Ma, L., Juefei-Xu, F., Xue, M., Chen, H., Liu, Y., Zhao, J., Li, B., Yin, J. & See, S., Jul 10 2019, ISSTA 2019 - Proceedings of the 28th ACM SIGSOFT International Symposium on Software Testing and Analysis. Zhang, D. & Moller, A. (eds.). Association for Computing Machinery, Inc, p. 158-168 11 p. (ISSTA 2019 - Proceedings of the 28th ACM SIGSOFT International Symposium on Software Testing and Analysis).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Seed
Testing
Defects
Deep neural networks
Accidents
2 Citations (Scopus)

DeepJIT: An end-to-end deep learning framework for just-in-time defect prediction

Hoang, T., Khanh Dam, H., Kamei, Y., Lo, D. & Ubayashi, N., May 2019, Proceedings - 2019 IEEE/ACM 16th International Conference on Mining Software Repositories, MSR 2019. IEEE Computer Society, p. 34-45 12 p. 8816772. (IEEE International Working Conference on Mining Software Repositories; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Defects
Quality assurance
Learning systems
Deep learning
Experiments
5 Citations (Scopus)

DeepStellar: Model-based quantitative analysis of stateful deep learning systems

Du, X., Xie, X., Li, Y., Ma, L., Liu, Y. & Zhao, J., Aug 12 2019, ESEC/FSE 2019 - Proceedings of the 2019 27th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering. Apel, S., Dumas, M., Russo, A. & Pfahl, D. (eds.). Association for Computing Machinery, Inc, p. 477-487 11 p. (ESEC/FSE 2019 - Proceedings of the 2019 27th ACM Joint Meeting European Software Engineering Conference and Symposium on the Foundations of Software Engineering).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Recurrent neural networks
Learning systems
Chemical analysis
Image classification
Speech recognition

DeepVisual: A visual programming tool for deep learning systems

Xie, C., Qi, H., Ma, L. & Zhao, J., May 2019, Proceedings - 2019 IEEE/ACM 27th International Conference on Program Comprehension, ICPC 2019. IEEE Computer Society, p. 130-134 5 p. 8813295. (IEEE International Conference on Program Comprehension; vol. 2019-May).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Computer programming
Learning systems
Neural networks
Network architecture
Drag

Defect Density-Dependent Electron Injection from Excited-State Ru(II) Tris-Diimine Complexes into Defect-Controlled Oxide Semiconductors

Nishioka, S., Yamazaki, Y., Okazaki, M., Sekizawa, K., Sahara, G., Murakoshi, R., Saito, D., Kuriki, R., Oshima, T., Hyodo, J., Yamazaki, Y., Ishitani, O., Mallouk, T. E. & Maeda, K., Nov 21 2019, In : Journal of Physical Chemistry C. 123, 46, p. 28310-28318 9 p.

Research output: Contribution to journalArticle

Electron injection
Defect density
Excited states
Oxides
injection
1 Citation (Scopus)

Deficiency of stress-associated gene Nupr1 increases bone volume by attenuating differentiation of osteoclasts and enhancing differentiation of osteoblasts

Shiraki, M., Xu, X., Iovanna, J. L., Kukita, T., Hirata, H., Kamohara, A., Kubota, Y., Miyamoto, H., Mawatari, M. & Kukita, A., Aug 1 2019, In : FASEB journal : official publication of the Federation of American Societies for Experimental Biology. 33, 8, p. 8836-8852 17 p.

Research output: Contribution to journalArticle

Osteoblasts
Osteoclasts
Bone
Genes
Bone and Bones
1 Citation (Scopus)

Definition of the profile gain factor and its application for internal transport barrier analysis in torus plasmas

Lhd Experiment Group, Jun 17 2019, In : Plasma Physics and Controlled Fusion. 61, 8, 085005.

Research output: Contribution to journalArticle

Plasmas
Ions
profiles
Thermal diffusion
ion temperature

Deformation of Ionospheric Potential Pattern by Ionospheric Hall Polarization

Nakamizo, A. & Yoshikawa, A., Sep 1 2019, In : Journal of Geophysical Research: Space Physics. 124, 9, p. 7553-7580 28 p.

Research output: Contribution to journalArticle

ionospherics
polarization
Polarization
causes
IMF