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  • Daisuke Kohda
2020

Biophysics at Kyushu University

Akiyama, R., Annaka, M., Kohda, D., Kubota, H., Maeda, Y., Matsumori, N., Mizuno, D. & Yoshida, N., Apr 1 2020, In : Biophysical Reviews. 12, 2, p. 245-247 3 p.

Research output: Contribution to journalComment/debate

1 Citation (Scopus)

Conformational ensemble of an intrinsically flexible loop in mitochondrial import protein Tim21 studied by modeling and molecular dynamics simulations

Srivastava, A., Bala, S., Motomura, H., Kohda, D., Tama, F. & Miyashita, O., Feb 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 2, 129417.

Research output: Contribution to journalArticle

Crystal contact-free conformation of an intrinsically flexible loop in protein crystal: Tim21 as the case study

Bala, S., Shinya, S., Srivastava, A., Ishikawa, M., Shimada, A., Kobayashi, N., Kojima, C., Tama, F., Miyashita, O. & Kohda, D., Feb 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 2, 129418.

Research output: Contribution to journalArticle

1 Citation (Scopus)

Mosaic Cooperativity in Slow Polypeptide Topological Isomerization Revealed by Residue-Specific NMR Thermodynamic Analysis

Fujinami, D., Motomura, H., Oshima, H., Mahin, A. A., Elsayed, K. M., Zendo, T., Sugita, Y., Sonomoto, K. & Kohda, D., Mar 5 2020, In : Journal of Physical Chemistry Letters. 11, 5, p. 1934-1939 6 p.

Research output: Contribution to journalArticle

Preface to the special issue on novel measurement techniques for visualizing ‘live’ protein molecules at work

Nishida, N., Tsukazaki, T. & Kohda, D., Feb 2020, In : Biochimica et Biophysica Acta - General Subjects. 1864, 2, 129421.

Research output: Contribution to journalEditorial

2019

Computational investigation of the conformational dynamics in Tom20-mitochondrial presequence tethered complexes

Srivastava, A., Tama, F., Kohda, D. & Miyashita, O., Jan 2019, In : Proteins: Structure, Function and Bioinformatics. 87, 1, p. 81-90 10 p.

Research output: Contribution to journalArticle

3 Citations (Scopus)

Phagocytosis is mediated by two-dimensional assemblies of the F-BAR protein GAS7

Hanawa-Suetsugu, K., Itoh, Y., Ab Fatah, M., Nishimura, T., Takemura, K., Takeshita, K., Kubota, S., Miyazaki, N., Wan Mohamad Noor, W. N. I., Inaba, T., Nguyen, N. T. H., Hamada-Nakahara, S., Oono-Yakura, K., Tachikawa, M., Iwasaki, K., Kohda, D., Yamamoto, M., Kitao, A., Shimada, A. & Suetsugu, S., Dec 1 2019, In : Nature communications. 10, 1, 4763.

Research output: Contribution to journalArticle

Open Access
2018

Comparative analysis of the oligosaccharide donors (Lipid-linked oligosaccharides) for the n-oligosaccharyl transfer reaction

Taguchi, Y., Fujinami, D. & Kohda, D., Jan 1 2018, In : Trends in Glycoscience and Glycotechnology. 30, 176, p. E169-E174, J145-J150

Research output: Contribution to journalArticle

Direct visualization of DNA baton pass between replication factors bound to PCNA

Mayanagi, K., Ishino, S., Shirai, T., Oyama, T., Kiyonari, S., Kohda, D., Morikawa, K. & Ishino, Y., Dec 1 2018, In : Scientific reports. 8, 1, 16209.

Research output: Contribution to journalArticle

2 Citations (Scopus)

Structural basis of protein asn-glycosylation by oligosaccharyltransferases

Kohda, D., Jan 1 2018, Advances in Experimental Medicine and Biology. Springer New York LLC, p. 171-199 29 p. (Advances in Experimental Medicine and Biology; vol. 1104).

Research output: Chapter in Book/Report/Conference proceedingChapter

2 Citations (Scopus)

Structures of the prefusion form of measles virus fusion protein in complex with inhibitors

Hashiguchi, T., Fukuda, Y., Matsuoka, R., Kuroda, D., Kubota, M., Shirogane, Y., Watanabe, S., Tsumoto, K., Kohda, D., Plemper, R. K. & Yanagi, Y., Mar 6 2018, In : Proceedings of the National Academy of Sciences of the United States of America. 115, 10, p. 2496-2501 6 p.

Research output: Contribution to journalArticle

19 Citations (Scopus)

The lantibiotic nukacin ISK-1 exists in an equilibrium between active and inactive lipid-II binding states

Fujinami, D., -Mahin, A. A., Elsayed, K. M., Islam, M. R., Nagao, J. I., Roy, U., Momin, S., Zendo, T., Kohda, D. & Sonomoto, K., Dec 1 2018, In : Communications Biology. 1, 1, 150.

Research output: Contribution to journalArticle

Open Access
5 Citations (Scopus)
8 Citations (Scopus)
2017

Asn-linked oligosaccharide chain of a crenarchaeon, Pyrobaculum calidifontis, is reminiscent of the eukaryotic high-mannose-type glycan

Fujinami, D., Taguchi, Y. & Kohda, D., Aug 1 2017, In : Glycobiology. 27, 8, p. 701-712 12 p.

Research output: Contribution to journalArticle

5 Citations (Scopus)

Protein-ligand interactions studied by NMR

Hiroaki, H. & Kohda, D., Nov 23 2017, Experimental Approaches of NMR Spectroscopy: Methodology and Application to Life Science and Materials Science. Springer Singapore, p. 579-600 22 p.

Research output: Chapter in Book/Report/Conference proceedingChapter

1 Citation (Scopus)

Tethering an N-glycosylation sequon-containing peptide creates a catalytically competent oligosaccharyltransferase complex

Matsumoto, S., Taguchi, Y., Shimada, A., Igura, M. & Kohda, D., Jan 31 2017, In : Biochemistry. 56, 4, p. 602-611 10 p.

Research output: Contribution to journalArticle

18 Citations (Scopus)
6 Citations (Scopus)

X-ray crystal structure of Escherichia coli HspQ, a protein involved in the retardation of replication initiation

Abe, Y., Shioi, S., Kita, S., Nakata, H., Maenaka, K., Kohda, D., Katayama, T. & Ueda, T., Nov 2017, In : FEBS Letters. 591, 22, p. 3805-3816 12 p.

Research output: Contribution to journalLetter

2016

Comparative analysis of archaeal lipid-linked oligosaccharides that serve as oligosaccharide donors for Asn glycosylation

Taguchi, Y., Fujinami, D. & Kohda, D., May 20 2016, In : Journal of Biological Chemistry. 291, 21, p. 11042-11054 13 p.

Research output: Contribution to journalArticle

22 Citations (Scopus)

Rational design of crystal contact-free space in protein crystals for analyzing spatial distribution of motions within protein molecules

Matsuoka, R., Shimada, A., Komuro, Y., Sugita, Y. & Kohda, D., Mar 2016, In : Protein Science. 25, 3, p. 754-768 15 p.

Research output: Contribution to journalArticle

8 Citations (Scopus)
8 Citations (Scopus)

Trisaccharide containing α2,3-linked sialic acid is a receptor for mumps virus

Kubota, M., Takeuchi, K., Watanabe, S., Ohno, S., Matsuoka, R., Kohda, D., Nakakita, S. I., Hiramatsu, H., Suzuki, Y., Nakayama, T., Terada, T., Shimizu, K., Shimizu, N., Shiroishi, M., Yanagi, Y. & Hashiguchi, T., Oct 11 2016, In : Proceedings of the National Academy of Sciences of the United States of America. 113, 41, p. 11579-11584 6 p.

Research output: Contribution to journalArticle

27 Citations (Scopus)