A definitive haplotype map of structural variations determined by microarray analysis of duplicated haploid genomes

Tomoko Tahira, Koji Yahara, Yoji Kukita, Koichiro Higasa, Kiyoko Kato, Norio Wake, Kenshi Hayashi

Research output: Contribution to journalArticlepeer-review

1 Citation (Scopus)

Abstract

Complete hydatidiform moles (CHMs) are tissues carrying duplicated haploid genomes derived from single sperms, and detecting copy number variations (CNVs) in CHMs is assumed to be sensitive and straightforward methods. We genotyped 108 CHM genomes using Affymetrix SNP 6.0 (GEO#: GSE18642) and Illumina 1M-duo (GEO#: GSE54948). After quality control, we obtained 84 definitive haplotype consisting of 1.7. million SNPs and 2339 CNV regions. The results are presented in the database of our web site (http://orca.gen.kyushu-u.ac.jp/cgi-bin/gbrowse/humanBuild37D4_1/).

Original languageEnglish
Pages (from-to)55-59
Number of pages5
JournalGenomics Data
Volume2
DOIs
Publication statusPublished - 2014
Externally publishedYes

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Biochemistry
  • Molecular Medicine
  • Genetics

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