A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens

Jirapong Jairin; Tetsuya Kobayashi; Yoshiyuki Yamagata; Sachiyo Sanada-Morimura; Kazuki Mori; Kosuke Tashiro; Satoru Kuhara; Seigo Kuwazaki; Masahiro Urio; Yoshitaka Suetsugu; Kimiko Yamamoto; Masaya Matsumura; Hideshi Yasui

doi:10.1093/dnares/dss030

A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens

Jirapong Jairin, Tetsuya Kobayashi, Yoshiyuki Yamagata, Sachiyo Sanada-Morimura, Kazuki Mori, Kosuke Tashiro, Satoru Kuhara, Seigo Kuwazaki, Masahiro Urio, Yoshitaka Suetsugu, Kimiko Yamamoto, Masaya Matsumura, Hideshi Yasui

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14 Citations (Scopus)

Abstract

In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.

Original language	English
Pages (from-to)	17-30
Number of pages	14
Journal	DNA Research
Volume	20
Issue number	1
DOIs	https://doi.org/10.1093/dnares/dss030
Publication status	Published - Feb 2013

All Science Journal Classification (ASJC) codes

Molecular Biology
Genetics

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10.1093/dnares/dss030

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Jairin, J., Kobayashi, T., Yamagata, Y., Sanada-Morimura, S., Mori, K., Tashiro, K., Kuhara, S., Kuwazaki, S., Urio, M., Suetsugu, Y., Yamamoto, K., Matsumura, M., & Yasui, H. (2013). A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. DNA Research, 20(1), 17-30. https://doi.org/10.1093/dnares/dss030

A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. / Jairin, Jirapong; Kobayashi, Tetsuya; Yamagata, Yoshiyuki; Sanada-Morimura, Sachiyo; Mori, Kazuki; Tashiro, Kosuke; Kuhara, Satoru; Kuwazaki, Seigo; Urio, Masahiro; Suetsugu, Yoshitaka; Yamamoto, Kimiko; Matsumura, Masaya; Yasui, Hideshi.

In: DNA Research, Vol. 20, No. 1, 02.2013, p. 17-30.

Research output: Contribution to journal › Article › peer-review

Jairin, J, Kobayashi, T, Yamagata, Y, Sanada-Morimura, S, Mori, K, Tashiro, K, Kuhara, S, Kuwazaki, S, Urio, M, Suetsugu, Y, Yamamoto, K, Matsumura, M & Yasui, H 2013, 'A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens', DNA Research, vol. 20, no. 1, pp. 17-30. https://doi.org/10.1093/dnares/dss030

Jairin, Jirapong ; Kobayashi, Tetsuya ; Yamagata, Yoshiyuki ; Sanada-Morimura, Sachiyo ; Mori, Kazuki ; Tashiro, Kosuke ; Kuhara, Satoru ; Kuwazaki, Seigo ; Urio, Masahiro ; Suetsugu, Yoshitaka ; Yamamoto, Kimiko ; Matsumura, Masaya ; Yasui, Hideshi. / A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. In: DNA Research. 2013 ; Vol. 20, No. 1. pp. 17-30.

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abstract = "In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.",

author = "Jirapong Jairin and Tetsuya Kobayashi and Yoshiyuki Yamagata and Sachiyo Sanada-Morimura and Kazuki Mori and Kosuke Tashiro and Satoru Kuhara and Seigo Kuwazaki and Masahiro Urio and Yoshitaka Suetsugu and Kimiko Yamamoto and Masaya Matsumura and Hideshi Yasui",

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AU - Sanada-Morimura, Sachiyo

AU - Mori, Kazuki

AU - Tashiro, Kosuke

AU - Kuhara, Satoru

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AU - Urio, Masahiro

AU - Suetsugu, Yoshitaka

AU - Yamamoto, Kimiko

AU - Matsumura, Masaya

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A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens

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