Abstract
In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.
| Original language | English |
|---|---|
| Pages (from-to) | 17-30 |
| Number of pages | 14 |
| Journal | DNA Research |
| Volume | 20 |
| Issue number | 1 |
| DOIs | |
| Publication status | Published - Feb 1 2013 |
Fingerprint
All Science Journal Classification (ASJC) codes
- Molecular Biology
- Genetics
Cite this
A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. / Jairin, Jirapong; Kobayashi, Tetsuya; Yamagata, Yoshiyuki; Sanada-Morimura, Sachiyo; Mori, Kazuki; Tashiro, Kosuke; Kuhara, Satoru; Kuwazaki, Seigo; Urio, Masahiro; Suetsugu, Yoshitaka; Yamamoto, Kimiko; Matsumura, Masaya; Yasui, Hideshi.
In: DNA Research, Vol. 20, No. 1, 01.02.2013, p. 17-30.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens
AU - Jairin, Jirapong
AU - Kobayashi, Tetsuya
AU - Yamagata, Yoshiyuki
AU - Sanada-Morimura, Sachiyo
AU - Mori, Kazuki
AU - Tashiro, Kosuke
AU - Kuhara, Satoru
AU - Kuwazaki, Seigo
AU - Urio, Masahiro
AU - Suetsugu, Yoshitaka
AU - Yamamoto, Kimiko
AU - Matsumura, Masaya
AU - Yasui, Hideshi
PY - 2013/2/1
Y1 - 2013/2/1
N2 - In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.
AB - In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.
UR - http://www.scopus.com/inward/record.url?scp=84874490128&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=84874490128&partnerID=8YFLogxK
U2 - 10.1093/dnares/dss030
DO - 10.1093/dnares/dss030
M3 - Article
C2 - 23204257
AN - SCOPUS:84874490128
VL - 20
SP - 17
EP - 30
JO - DNA Research
JF - DNA Research
SN - 1340-2838
IS - 1
ER -