A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens

Jirapong Jairin, Tetsuya Kobayashi, Yoshiyuki Yamagata, Sachiyo Sanada-Morimura, Kazuki Mori, Kosuke Tashiro, Satoru Kuhara, Seigo Kuwazaki, Masahiro Urio, Yoshitaka Suetsugu, Kimiko Yamamoto, Masaya Matsumura, Hideshi Yasui

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

In this study, we developed the first genetic linkage map for the major rice insect pest, the brown planthopper (BPH, Nilaparvata lugens). The linkage map was constructed by integrating linkage data from two backcross populations derived from three inbred BPH strains. The consensus map consists of 474 simple sequence repeats, 43 single-nucleotide polymorphisms, and 1 sequence-tagged site, for a total of 518 markers at 472 unique positions in 17 linkage groups. The linkage groups cover 1093.9 cM, with an average distance of 2.3 cM between loci. The average number of marker loci per linkage group was 27.8. The sex-linkage group was identified by exploiting X-linked and Y-specific markers. Our linkage map and the newly developed markers used to create it constitute an essential resource and a useful framework for future genetic analyses in BPH.

Original languageEnglish
Pages (from-to)17-30
Number of pages14
JournalDNA Research
Volume20
Issue number1
DOIs
Publication statusPublished - Feb 1 2013

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Sequence Tagged Sites
Genetic Linkage
Information Storage and Retrieval
Microsatellite Repeats
Single Nucleotide Polymorphism
Insects
Population
Oryza

All Science Journal Classification (ASJC) codes

  • Molecular Biology
  • Genetics

Cite this

A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. / Jairin, Jirapong; Kobayashi, Tetsuya; Yamagata, Yoshiyuki; Sanada-Morimura, Sachiyo; Mori, Kazuki; Tashiro, Kosuke; Kuhara, Satoru; Kuwazaki, Seigo; Urio, Masahiro; Suetsugu, Yoshitaka; Yamamoto, Kimiko; Matsumura, Masaya; Yasui, Hideshi.

In: DNA Research, Vol. 20, No. 1, 01.02.2013, p. 17-30.

Research output: Contribution to journalArticle

Jairin, J, Kobayashi, T, Yamagata, Y, Sanada-Morimura, S, Mori, K, Tashiro, K, Kuhara, S, Kuwazaki, S, Urio, M, Suetsugu, Y, Yamamoto, K, Matsumura, M & Yasui, H 2013, 'A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens', DNA Research, vol. 20, no. 1, pp. 17-30. https://doi.org/10.1093/dnares/dss030
Jairin, Jirapong ; Kobayashi, Tetsuya ; Yamagata, Yoshiyuki ; Sanada-Morimura, Sachiyo ; Mori, Kazuki ; Tashiro, Kosuke ; Kuhara, Satoru ; Kuwazaki, Seigo ; Urio, Masahiro ; Suetsugu, Yoshitaka ; Yamamoto, Kimiko ; Matsumura, Masaya ; Yasui, Hideshi. / A simple sequence repeat- and single-nucleotide polymorphism-based genetic linkage map of the brown planthopper, Nilaparvata lugens. In: DNA Research. 2013 ; Vol. 20, No. 1. pp. 17-30.
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