BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments

Mikita Suyama; David Torrents; Peer Bork

doi:10.1093/bioinformatics/bth172

BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments

Mikita Suyama, David Torrents, Peer Bork

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16 Citations (Scopus)

Abstract

BLAST2GENE is a program that allows a detailed analysis of genomic regions containing completely or partially duplicated genes. From a BLAST (or BL2SEQ) comparison of a protein or nucleotide query sequence with any genomic region of interest, BLAST2GENE processes all high scoring pairwise alignments (HSPs) and provides the disposition all independent copies along the genomic fragment. The results are provided in text and PostScript formats to allow an automatic and visual evaluation of the respective region.

Original language	English
Pages (from-to)	1968-1970
Number of pages	3
Journal	Bioinformatics
Volume	20
Issue number	12
DOIs	https://doi.org/10.1093/bioinformatics/bth172
Publication status	Published - Aug 12 2004
Externally published	Yes

All Science Journal Classification (ASJC) codes

Statistics and Probability
Biochemistry
Molecular Biology
Computer Science Applications
Computational Theory and Mathematics
Computational Mathematics

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10.1093/bioinformatics/bth172

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abstract = "BLAST2GENE is a program that allows a detailed analysis of genomic regions containing completely or partially duplicated genes. From a BLAST (or BL2SEQ) comparison of a protein or nucleotide query sequence with any genomic region of interest, BLAST2GENE processes all high scoring pairwise alignments (HSPs) and provides the disposition all independent copies along the genomic fragment. The results are provided in text and PostScript formats to allow an automatic and visual evaluation of the respective region.",

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AU - Bork, Peer

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AB - BLAST2GENE is a program that allows a detailed analysis of genomic regions containing completely or partially duplicated genes. From a BLAST (or BL2SEQ) comparison of a protein or nucleotide query sequence with any genomic region of interest, BLAST2GENE processes all high scoring pairwise alignments (HSPs) and provides the disposition all independent copies along the genomic fragment. The results are provided in text and PostScript formats to allow an automatic and visual evaluation of the respective region.

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BLAST2GENE: A comprehensive conversion of BLAST output into independent genes and gene fragments

Abstract

All Science Journal Classification (ASJC) codes

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