Cell image analysis: Algorithms, system and applications

Takeo Kanade, Zhaozheng Yin, Ryoma Bise, Seungil Huh, Sungeun Eom, Michael F. Sandbothe, Mei Chen

Research output: Chapter in Book/Report/Conference proceedingConference contribution

65 Citations (Scopus)

Abstract

We present several algorithms for cell image analysis including microscopy image restoration, cell event detection and cell tracking in a large population. The algorithms are integrated into an automated system capable of quantifying cell proliferation metrics in vitro in real-time. This offers unique opportunities for biological applications such as efficient cell behavior discovery in response to different cell culturing conditions and adaptive experiment control. We quantitatively evaluated our system's performance on 16 microscopy image sequences with satisfactory accuracy for biologists' need. We have also developed a public website compatible to the system's local user interface, thereby allowing biologists to conveniently check their experiment progress online. The website will serve as a community resource that allows other research groups to upload their cell images for analysis and comparison.

Original languageEnglish
Title of host publication2011 IEEE Workshop on Applications of Computer Vision, WACV 2011
Pages374-381
Number of pages8
DOIs
Publication statusPublished - Mar 16 2011
Externally publishedYes
Event2011 IEEE Workshop on Applications of Computer Vision, WACV 2011 - Kona, HI, United States
Duration: Jan 5 2011Jan 7 2011

Publication series

Name2011 IEEE Workshop on Applications of Computer Vision, WACV 2011

Other

Other2011 IEEE Workshop on Applications of Computer Vision, WACV 2011
CountryUnited States
CityKona, HI
Period1/5/111/7/11

Fingerprint

Image analysis
Websites
Microscopic examination
Cell proliferation
Image reconstruction
User interfaces
Experiments

All Science Journal Classification (ASJC) codes

  • Computer Science Applications
  • Computer Vision and Pattern Recognition

Cite this

Kanade, T., Yin, Z., Bise, R., Huh, S., Eom, S., Sandbothe, M. F., & Chen, M. (2011). Cell image analysis: Algorithms, system and applications. In 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011 (pp. 374-381). [5711528] (2011 IEEE Workshop on Applications of Computer Vision, WACV 2011). https://doi.org/10.1109/WACV.2011.5711528

Cell image analysis : Algorithms, system and applications. / Kanade, Takeo; Yin, Zhaozheng; Bise, Ryoma; Huh, Seungil; Eom, Sungeun; Sandbothe, Michael F.; Chen, Mei.

2011 IEEE Workshop on Applications of Computer Vision, WACV 2011. 2011. p. 374-381 5711528 (2011 IEEE Workshop on Applications of Computer Vision, WACV 2011).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Kanade, T, Yin, Z, Bise, R, Huh, S, Eom, S, Sandbothe, MF & Chen, M 2011, Cell image analysis: Algorithms, system and applications. in 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011., 5711528, 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011, pp. 374-381, 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011, Kona, HI, United States, 1/5/11. https://doi.org/10.1109/WACV.2011.5711528
Kanade T, Yin Z, Bise R, Huh S, Eom S, Sandbothe MF et al. Cell image analysis: Algorithms, system and applications. In 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011. 2011. p. 374-381. 5711528. (2011 IEEE Workshop on Applications of Computer Vision, WACV 2011). https://doi.org/10.1109/WACV.2011.5711528
Kanade, Takeo ; Yin, Zhaozheng ; Bise, Ryoma ; Huh, Seungil ; Eom, Sungeun ; Sandbothe, Michael F. ; Chen, Mei. / Cell image analysis : Algorithms, system and applications. 2011 IEEE Workshop on Applications of Computer Vision, WACV 2011. 2011. pp. 374-381 (2011 IEEE Workshop on Applications of Computer Vision, WACV 2011).
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