Clarification of the role of protein in carbonmonoxy myoglobin by investigating electronic states

Kouji Chiba, Toshiyuki Hirano, Fumitoshi Sato, Masahiro Okamoto

Research output: Contribution to journalArticle

2 Citations (Scopus)

Abstract

This article reports the proton tautomerization effects of distal histidine residues in carbonmonoxy myoglobin according to the density functional calculations of the whole protein. The electron eigenstates and electrostatic potential (ESP) distributed around heme and its pocket vary significantly depending on the protonation positions of the distal histidine residues. To investigate the range over which the electronic structures are affected by the proton tautomerization, the quantum mechanics/molecular mechanics (QM/MM) method is applied to probe the QM size to reproduce the atomic partial charges and ESP around the active center. Consequently, we show that these properties converged for the 300 pm QM/MM system in this study. During the analysis, we also find that amino residues such as Phe43, Val68, and Phe138 interact strongly with heme through orbital mixing, indicating that the protein is a medium not only interacting with the reaction center, but also buffering on electrons.

Original languageEnglish
Pages (from-to)2345-2354
Number of pages10
JournalInternational Journal of Quantum Chemistry
Volume113
Issue number21
DOIs
Publication statusPublished - Nov 5 2013

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myoglobin
Molecular mechanics
Myoglobin
Quantum theory
Electronic states
Heme
Histidine
Protons
Electrostatics
histidine
proteins
Electrons
quantum mechanics
Protonation
electronics
electrostatics
Electronic structure
Density functional theory
Proteins
protons

All Science Journal Classification (ASJC) codes

  • Atomic and Molecular Physics, and Optics
  • Condensed Matter Physics
  • Physical and Theoretical Chemistry

Cite this

Clarification of the role of protein in carbonmonoxy myoglobin by investigating electronic states. / Chiba, Kouji; Hirano, Toshiyuki; Sato, Fumitoshi; Okamoto, Masahiro.

In: International Journal of Quantum Chemistry, Vol. 113, No. 21, 05.11.2013, p. 2345-2354.

Research output: Contribution to journalArticle

Chiba, Kouji ; Hirano, Toshiyuki ; Sato, Fumitoshi ; Okamoto, Masahiro. / Clarification of the role of protein in carbonmonoxy myoglobin by investigating electronic states. In: International Journal of Quantum Chemistry. 2013 ; Vol. 113, No. 21. pp. 2345-2354.
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