Comparative study of circadian clock models, in search of processes promoting oscillation

Gen Kurosawa, Atsushi Mochizuki, Yoh Iwasa

Research output: Contribution to journalArticle

45 Citations (Scopus)

Abstract

We study simple models for circadian rhythm, and examine the condition in which the equilibrium is unstable, generating a sustained oscillation. In the models, a clock gene(s) is transcribed to produce mRNAs, which are translated to produce proteins that suppress the transcription of the clock gene(s). First, using a Lyapunov function, we prove under very general conditions that two-variable models cannot generate a stable oscillation, implying that additional structures are needed for the model to generate a sustainable rhythm. By comparing several models of different complexities using the Routh-Hurwitz criteria of stability, we show that a sustained oscillation is more likely to occur if the cell is compartmentalized and the proteins need to be transported from the cytosol to the nucleus, if the proteins have to be modified before entering the nucleus, if the kinetics of transcription inhibition or the transport to the nucleus have cooperativity with a nonlinear dependence on the substrate concentration, or if the products of two clock genes form a heterodimer that suppresses both of their own genes. We discuss the implications of these results.

Original languageEnglish
Pages (from-to)193-208
Number of pages16
JournalJournal of Theoretical Biology
Volume216
Issue number2
DOIs
Publication statusPublished - Jan 1 2002

Fingerprint

Circadian Clocks
circadian rhythm
Comparative Study
oscillation
Clocks
Oscillation
Genes
Nucleus
Gene
Transcription
Proteins
Protein
genes
transcription (genetics)
Circadian Rhythm
Model
Cytosol
proteins
Lyapunov functions
cytosol

All Science Journal Classification (ASJC) codes

  • Statistics and Probability
  • Modelling and Simulation
  • Biochemistry, Genetics and Molecular Biology(all)
  • Immunology and Microbiology(all)
  • Agricultural and Biological Sciences(all)
  • Applied Mathematics

Cite this

Comparative study of circadian clock models, in search of processes promoting oscillation. / Kurosawa, Gen; Mochizuki, Atsushi; Iwasa, Yoh.

In: Journal of Theoretical Biology, Vol. 216, No. 2, 01.01.2002, p. 193-208.

Research output: Contribution to journalArticle

Kurosawa, Gen ; Mochizuki, Atsushi ; Iwasa, Yoh. / Comparative study of circadian clock models, in search of processes promoting oscillation. In: Journal of Theoretical Biology. 2002 ; Vol. 216, No. 2. pp. 193-208.
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