Comparative study of methods for extraction and purification of environmental DNA from high-strength wastewater sludge

Meisam Tabatabaei, Mohd Rafein Zakaria, Raha Abdul Rahim, Norhani Abdullah, André Denis G. Wright, Yoshihito Shirai, Mehdi Shamsara, Kenji Sakai, Mohd Ali Hassan

Research output: Contribution to journalArticle

6 Citations (Scopus)

Abstract

DNA extraction from wastewater sludge (COD 50000 and BOD 25000 mg/l) was conducted using nine different methods normally used for environmental samples including a procedure used in this study and the results obtained were compared. The quality of the differently extracted DNAs was subsequently assessed by measuring humic acid concentration, cell lysis efficiency, polymerase chain reaction (PCR) amplification of methanogenic and eubacterial 16S rDNA. The protocol developed in this study was further evaluated by extracting DNA from various high-strength wastewater sludge samples, denaturing gradient gel electrophoresis (DGGE) and fluorescent in situ hybridization (FISH) analyses. The results revealed that great differences existed among the nine procedures and only a few produced satisfactory results when applied to high-strength wastewater sludge. Thermal shock alone was shown inefficient to disrupt the methanogenic cell wall to release the DNA. The method presented in this study (Procedure 9) is generally recommended because of the low concentration of contaminants and its high efficiency despite its simplicity.

Original languageEnglish
Pages (from-to)4926-4937
Number of pages12
JournalAfrican Journal of Biotechnology
Volume9
Issue number31
Publication statusPublished - Sep 3 2010

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Applied Microbiology and Biotechnology
  • Molecular Biology
  • Genetics
  • Agronomy and Crop Science

Fingerprint Dive into the research topics of 'Comparative study of methods for extraction and purification of environmental DNA from high-strength wastewater sludge'. Together they form a unique fingerprint.

  • Cite this

    Tabatabaei, M., Zakaria, M. R., Rahim, R. A., Abdullah, N., Wright, A. D. G., Shirai, Y., Shamsara, M., Sakai, K., & Hassan, M. A. (2010). Comparative study of methods for extraction and purification of environmental DNA from high-strength wastewater sludge. African Journal of Biotechnology, 9(31), 4926-4937.