TY - GEN

T1 - Computing longest common substring and all palindromes from compressed strings

AU - Matsubara, Wataru

AU - Inenaga, Shunsuke

AU - Ishino, Akira

AU - Shinohara, Ayumi

AU - Nakamura, Tomoyuki

AU - Hashimoto, Kazuo

N1 - Copyright:
Copyright 2020 Elsevier B.V., All rights reserved.

PY - 2008

Y1 - 2008

N2 - This paper studies two problems on compressed strings described in terms of straight line programs (SLPs). One is to compute the length of the longest common substring of two given SLP-compressed strings, and the other is to compute all palindromes of a given SLP-compressed string. In order to solve these problems efficiently (in polynomial time w.r.t. the compressed size) decompression is never feasible, since the decompressed size can be exponentially large. We develop combinatorial algorithms that solve these problems in O(n4 log n) time with O(n3) space, and in O(n 4) time with O(n2) space, respectively, where n is the size of the input SLP-compressed strings.

AB - This paper studies two problems on compressed strings described in terms of straight line programs (SLPs). One is to compute the length of the longest common substring of two given SLP-compressed strings, and the other is to compute all palindromes of a given SLP-compressed string. In order to solve these problems efficiently (in polynomial time w.r.t. the compressed size) decompression is never feasible, since the decompressed size can be exponentially large. We develop combinatorial algorithms that solve these problems in O(n4 log n) time with O(n3) space, and in O(n 4) time with O(n2) space, respectively, where n is the size of the input SLP-compressed strings.

UR - http://www.scopus.com/inward/record.url?scp=38549098620&partnerID=8YFLogxK

UR - http://www.scopus.com/inward/citedby.url?scp=38549098620&partnerID=8YFLogxK

U2 - 10.1007/978-3-540-77566-9_31

DO - 10.1007/978-3-540-77566-9_31

M3 - Conference contribution

AN - SCOPUS:38549098620

SN - 354077565X

SN - 9783540775652

T3 - Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

SP - 364

EP - 375

BT - SOFSEM 2008

PB - Springer Verlag

T2 - SOFSEM 2008 - 34th Conference on Current Trends in Theory and Practice of Computer Science

Y2 - 19 January 2008 through 25 January 2008

ER -