Crystal structure of rat apo-heme oxygenase-1 (HO-1): Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms

Masakazu Sugishima, Hiroshi Sakamoto, Yoshimitsu Kakuta, Yoshiaki Omata, Shunsuke Hayashi, Masato Noguchi, Keiichi Fukuyama

Research output: Contribution to journalArticle

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Abstract

Heme oxygenase (HO) catalyzes the oxidative cleavage of heme to biliverdin by utilizing O2 and NADPH. HO (apoHO) was crystallized as twinned P32 with three molecules per asymmetric unit, and its crystal structure was determined at 2.55 Å resolution. Structural comparison of apoHO and its complex with heme (HO-heme) showed three distinct differences. First, the A helix of the eight α-helices (A-H) in HO-heme, which includes the proximal ligand of heme (His25), is invisible in apoHO. In addition, the B helix, a portion of which builds the heme pocket, is shifted toward the heme pocket in apoHO. Second, Gln38 is shifted toward the position where the α-meso carbon of heme is located in HO-heme. Nε of Gln38 is hydrogen-bonded to the carbonyl group of Glu29 located at the C-terminal side of the A helix in HO-heme, indicative that this hydrogen bond restrains the angle between the A and B helices in HO-heme. Third, the amide group of Gly143 in the F helix is directed outward from the heme pocket in apoHO, whereas it is directed toward the distal ligand of heme in HO-heme. This means that the F helix around Gly143 must change its conformation to accommodate heme binding. The apoHO structure has the characteristic that the helix on one side of the heme pocket fluctuates, whereas the rest of the structure is similar to that of HO-heme, as observed in such hemoproteins as myoglobin and cytochromes b5 and b562. These structural features of apoHO suggest that the orientation of the proximal helix and the position of His25 are fixed upon heme binding.

Original languageEnglish
Pages (from-to)7293-7300
Number of pages8
JournalBiochemistry
Volume41
Issue number23
DOIs
Publication statusPublished - Jun 11 2002

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Heme Oxygenase-1
Heme
Rats
Crystal structure
Heme Oxygenase (Decyclizing)
Hydrogen
Biliverdine
Ligands
Cytochromes b5
Myoglobin

All Science Journal Classification (ASJC) codes

  • Biochemistry

Cite this

Crystal structure of rat apo-heme oxygenase-1 (HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms. / Sugishima, Masakazu; Sakamoto, Hiroshi; Kakuta, Yoshimitsu; Omata, Yoshiaki; Hayashi, Shunsuke; Noguchi, Masato; Fukuyama, Keiichi.

In: Biochemistry, Vol. 41, No. 23, 11.06.2002, p. 7293-7300.

Research output: Contribution to journalArticle

Sugishima, Masakazu ; Sakamoto, Hiroshi ; Kakuta, Yoshimitsu ; Omata, Yoshiaki ; Hayashi, Shunsuke ; Noguchi, Masato ; Fukuyama, Keiichi. / Crystal structure of rat apo-heme oxygenase-1 (HO-1) : Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms. In: Biochemistry. 2002 ; Vol. 41, No. 23. pp. 7293-7300.
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abstract = "Heme oxygenase (HO) catalyzes the oxidative cleavage of heme to biliverdin by utilizing O2 and NADPH. HO (apoHO) was crystallized as twinned P32 with three molecules per asymmetric unit, and its crystal structure was determined at 2.55 {\AA} resolution. Structural comparison of apoHO and its complex with heme (HO-heme) showed three distinct differences. First, the A helix of the eight α-helices (A-H) in HO-heme, which includes the proximal ligand of heme (His25), is invisible in apoHO. In addition, the B helix, a portion of which builds the heme pocket, is shifted toward the heme pocket in apoHO. Second, Gln38 is shifted toward the position where the α-meso carbon of heme is located in HO-heme. Nε of Gln38 is hydrogen-bonded to the carbonyl group of Glu29 located at the C-terminal side of the A helix in HO-heme, indicative that this hydrogen bond restrains the angle between the A and B helices in HO-heme. Third, the amide group of Gly143 in the F helix is directed outward from the heme pocket in apoHO, whereas it is directed toward the distal ligand of heme in HO-heme. This means that the F helix around Gly143 must change its conformation to accommodate heme binding. The apoHO structure has the characteristic that the helix on one side of the heme pocket fluctuates, whereas the rest of the structure is similar to that of HO-heme, as observed in such hemoproteins as myoglobin and cytochromes b5 and b562. These structural features of apoHO suggest that the orientation of the proximal helix and the position of His25 are fixed upon heme binding.",
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T2 - Mechanism of heme binding in HO-1 inferred from structural comparison of the apo and heme complex forms

AU - Sugishima, Masakazu

AU - Sakamoto, Hiroshi

AU - Kakuta, Yoshimitsu

AU - Omata, Yoshiaki

AU - Hayashi, Shunsuke

AU - Noguchi, Masato

AU - Fukuyama, Keiichi

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N2 - Heme oxygenase (HO) catalyzes the oxidative cleavage of heme to biliverdin by utilizing O2 and NADPH. HO (apoHO) was crystallized as twinned P32 with three molecules per asymmetric unit, and its crystal structure was determined at 2.55 Å resolution. Structural comparison of apoHO and its complex with heme (HO-heme) showed three distinct differences. First, the A helix of the eight α-helices (A-H) in HO-heme, which includes the proximal ligand of heme (His25), is invisible in apoHO. In addition, the B helix, a portion of which builds the heme pocket, is shifted toward the heme pocket in apoHO. Second, Gln38 is shifted toward the position where the α-meso carbon of heme is located in HO-heme. Nε of Gln38 is hydrogen-bonded to the carbonyl group of Glu29 located at the C-terminal side of the A helix in HO-heme, indicative that this hydrogen bond restrains the angle between the A and B helices in HO-heme. Third, the amide group of Gly143 in the F helix is directed outward from the heme pocket in apoHO, whereas it is directed toward the distal ligand of heme in HO-heme. This means that the F helix around Gly143 must change its conformation to accommodate heme binding. The apoHO structure has the characteristic that the helix on one side of the heme pocket fluctuates, whereas the rest of the structure is similar to that of HO-heme, as observed in such hemoproteins as myoglobin and cytochromes b5 and b562. These structural features of apoHO suggest that the orientation of the proximal helix and the position of His25 are fixed upon heme binding.

AB - Heme oxygenase (HO) catalyzes the oxidative cleavage of heme to biliverdin by utilizing O2 and NADPH. HO (apoHO) was crystallized as twinned P32 with three molecules per asymmetric unit, and its crystal structure was determined at 2.55 Å resolution. Structural comparison of apoHO and its complex with heme (HO-heme) showed three distinct differences. First, the A helix of the eight α-helices (A-H) in HO-heme, which includes the proximal ligand of heme (His25), is invisible in apoHO. In addition, the B helix, a portion of which builds the heme pocket, is shifted toward the heme pocket in apoHO. Second, Gln38 is shifted toward the position where the α-meso carbon of heme is located in HO-heme. Nε of Gln38 is hydrogen-bonded to the carbonyl group of Glu29 located at the C-terminal side of the A helix in HO-heme, indicative that this hydrogen bond restrains the angle between the A and B helices in HO-heme. Third, the amide group of Gly143 in the F helix is directed outward from the heme pocket in apoHO, whereas it is directed toward the distal ligand of heme in HO-heme. This means that the F helix around Gly143 must change its conformation to accommodate heme binding. The apoHO structure has the characteristic that the helix on one side of the heme pocket fluctuates, whereas the rest of the structure is similar to that of HO-heme, as observed in such hemoproteins as myoglobin and cytochromes b5 and b562. These structural features of apoHO suggest that the orientation of the proximal helix and the position of His25 are fixed upon heme binding.

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