Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation

Shunsuke Matsumoto, Atsushi Shimada, James Nyirenda, Mayumi Igura, Yoshiaki Kawano, Daisuke Kohda

    Research output: Contribution to journalArticle

    56 Citations (Scopus)

    Abstract

    Oligosaccharyltransferase transfers an oligosaccharide chain to the asparagine residues in proteins. The archaeal and eubacterial oligosaccharyltransferases are single subunit membrane enzymes, referred to as "AglB" (archaeal glycosylation B) and "PglB" (protein glycosylation B), respectively. Only one crystal structure of a fulllength PglB has been solved. Here we report the crystal structures of the full-length AglB from a hyperthermophilic archaeon, Archaeoglobus fulgidus. The AglB and PglB proteins share the common overall topology of the 13 transmembrane helices, and a characteristic long plastic loop in the transmembrane region. This is the structural basis for the formation of the catalytic center, consisting of conserved acidic residues coordinating a divalent metal ion. In one crystal form, a sulfate ion was bound next to the metal ion. This structure appears to represent a dolichol-phosphate binding state, and suggests the release mechanism for the glycosylated product. The structure in the other crystal form corresponds to the resting state conformation with the well-ordered plastic loop in the transmembrane region. The overall structural similarity between the distantly related AglB and PglB proteins strongly indicates the conserved catalytic mechanism in the eukaryotic counterpart, the STT3 (stauroporine and temperature sensitivity 3) protein. The detailed structural comparison provided the dynamic view of the N-glycosylation reaction, involving the conversion between the structured and unstructured states of the plastic loop in the transmembrane region and the formation and collapse of the Ser/Thr-binding pocket in the C-Terminal globular domain.

    Original languageEnglish
    Pages (from-to)17868-17873
    Number of pages6
    JournalProceedings of the National Academy of Sciences of the United States of America
    Volume110
    Issue number44
    DOIs
    Publication statusPublished - Oct 29 2013

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    Glycosylation
    Plastics
    Ions
    Dolichol Phosphates
    Proteins
    Archaeoglobus fulgidus
    Metals
    Conversion Disorder
    Asparagine
    Archaea
    Oligosaccharides
    Sulfates
    Temperature
    Membranes
    dolichyl-diphosphooligosaccharide - protein glycotransferase
    Enzymes

    All Science Journal Classification (ASJC) codes

    • General

    Cite this

    Crystal structures of an archaeal oligosaccharyltransferase provide insights into the catalytic cycle of N-linked protein glycosylation. / Matsumoto, Shunsuke; Shimada, Atsushi; Nyirenda, James; Igura, Mayumi; Kawano, Yoshiaki; Kohda, Daisuke.

    In: Proceedings of the National Academy of Sciences of the United States of America, Vol. 110, No. 44, 29.10.2013, p. 17868-17873.

    Research output: Contribution to journalArticle

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