Development of an integrated database for genome mapping and nucleotide sequences

Takahiko Suzuki, Satoru Kuhara, Toshihisa Takagi, Minoru Kanehisa

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

An integrated database system for genome mapping and DNA sequence data was developed. The system seamlessly manages two different types of data each of which has a unique complex structure. A graphical user interface (GUI) enables easy retrieval of information obtained from genome mapping and DNA sequence data. The map data are imported from the Genome Data Base (GDB). The sequence data are imported from the GenBank. Two versions of the system were developed: The first version uses an internal database management routine. The other version has a Sybase relational database interface. Trade-offs between the two versions are discussed.

Original languageEnglish
Title of host publicationProceedings of the Hawaii International Conference on System Sciences
EditorsJay F. Nunamaker, Ralph H.Jr. Sprague
PublisherPubl by IEEE
Pages68-76
Number of pages9
ISBN (Print)0818650907
Publication statusPublished - Jan 1 1995
Externally publishedYes
EventProceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5) - Wailea, HI, USA
Duration: Jan 4 1994Jan 7 1994

Publication series

NameProceedings of the Hawaii International Conference on System Sciences
Volume5
ISSN (Print)1060-3425

Other

OtherProceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5)
CityWailea, HI, USA
Period1/4/941/7/94

Fingerprint

Nucleotides
Genes
DNA sequences
Graphical user interfaces

All Science Journal Classification (ASJC) codes

  • Software
  • Industrial and Manufacturing Engineering

Cite this

Suzuki, T., Kuhara, S., Takagi, T., & Kanehisa, M. (1995). Development of an integrated database for genome mapping and nucleotide sequences. In J. F. Nunamaker, & R. H. J. Sprague (Eds.), Proceedings of the Hawaii International Conference on System Sciences (pp. 68-76). (Proceedings of the Hawaii International Conference on System Sciences; Vol. 5). Publ by IEEE.

Development of an integrated database for genome mapping and nucleotide sequences. / Suzuki, Takahiko; Kuhara, Satoru; Takagi, Toshihisa; Kanehisa, Minoru.

Proceedings of the Hawaii International Conference on System Sciences. ed. / Jay F. Nunamaker; Ralph H.Jr. Sprague. Publ by IEEE, 1995. p. 68-76 (Proceedings of the Hawaii International Conference on System Sciences; Vol. 5).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Suzuki, T, Kuhara, S, Takagi, T & Kanehisa, M 1995, Development of an integrated database for genome mapping and nucleotide sequences. in JF Nunamaker & RHJ Sprague (eds), Proceedings of the Hawaii International Conference on System Sciences. Proceedings of the Hawaii International Conference on System Sciences, vol. 5, Publ by IEEE, pp. 68-76, Proceedings of the 27th Hawaii International Conference on System Sciences (HICSS-27). Part 4 (of 5), Wailea, HI, USA, 1/4/94.
Suzuki T, Kuhara S, Takagi T, Kanehisa M. Development of an integrated database for genome mapping and nucleotide sequences. In Nunamaker JF, Sprague RHJ, editors, Proceedings of the Hawaii International Conference on System Sciences. Publ by IEEE. 1995. p. 68-76. (Proceedings of the Hawaii International Conference on System Sciences).
Suzuki, Takahiko ; Kuhara, Satoru ; Takagi, Toshihisa ; Kanehisa, Minoru. / Development of an integrated database for genome mapping and nucleotide sequences. Proceedings of the Hawaii International Conference on System Sciences. editor / Jay F. Nunamaker ; Ralph H.Jr. Sprague. Publ by IEEE, 1995. pp. 68-76 (Proceedings of the Hawaii International Conference on System Sciences).
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