DynaBioS

A platform for cell/biodynamics simulators

Takao Shimayoshi, Kenta Hori, Jianyin Lu, Akira Amano, Tetsuya Matsuda, Akinori Noma

Research output: Contribution to journalArticle

3 Citations (Scopus)

Abstract

Biological simulation has become an important technology for biological research. Though multi-domain simulation technique is required for analysis of complicated biological activities, multi-domain biosimuator system tends to be very complicated and so requires a high developing cost. To improve this situation, we propose a biosimulator development platform, DynaBioS, which can handle complex interactions between phenomena in different domains, such as electrophysiology and mechanics. A biosimulator system is composed of components, each of which is a sub-simulator of a phenomenon, and exchanges event messages to each others as the interaction of the phenomena. This design allows easy replacement of a model for a phenomena by interchanging a corresponding component. This platform reduces costs to develop simulators, by implementation of components by wrapping existing software products, and by reuse of components. Examples of developed simulators are given to show that this platform facilitates the development of biosimulators.

Original languageEnglish
JournalIEEJ Transactions on Electronics, Information and Systems
Volume127
Issue number11
DOIs
Publication statusPublished - Jan 1 2007
Externally publishedYes

Fingerprint

Simulators
Electrophysiology
Bioactivity
Costs
Mechanics

All Science Journal Classification (ASJC) codes

  • Electrical and Electronic Engineering

Cite this

DynaBioS : A platform for cell/biodynamics simulators. / Shimayoshi, Takao; Hori, Kenta; Lu, Jianyin; Amano, Akira; Matsuda, Tetsuya; Noma, Akinori.

In: IEEJ Transactions on Electronics, Information and Systems, Vol. 127, No. 11, 01.01.2007.

Research output: Contribution to journalArticle

Shimayoshi, Takao ; Hori, Kenta ; Lu, Jianyin ; Amano, Akira ; Matsuda, Tetsuya ; Noma, Akinori. / DynaBioS : A platform for cell/biodynamics simulators. In: IEEJ Transactions on Electronics, Information and Systems. 2007 ; Vol. 127, No. 11.
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