Abstract
Palindromes are important objects in strings which have been extensively studied from combinatorial, algorithmic, and bioinformatics points of views. Manacher [J. ACM 1975] proposed a seminal algorithm that computes the longest substring palindromes (LSPals) of a given string in O(n) time, where n is the length of the string. In this paper, we consider the problem of finding the LSPal after the string is edited. We present an algorithm that uses O(n) time and space for preprocessing, and answers the length of the LSPals in O(ℓ + log log n) time, after a substring in T is replaced by a string of arbitrary length ℓ. This outperforms the query algorithm proposed in our previous work [CPM 2018] that uses O(ℓ + log n) time for each query.
| Original language | English |
|---|---|
| Title of host publication | 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019 |
| Editors | Nadia Pisanti, Solon P. Pissis |
| Publisher | Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing |
| ISBN (Electronic) | 9783959771030 |
| DOIs | |
| Publication status | Published - Jun 1 2019 |
| Event | 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019 - Pisa, Italy Duration: Jun 18 2019 → Jun 20 2019 |
Publication series
| Name | Leibniz International Proceedings in Informatics, LIPIcs |
|---|---|
| Volume | 128 |
| ISSN (Print) | 1868-8969 |
Conference
| Conference | 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019 |
|---|---|
| Country | Italy |
| City | Pisa |
| Period | 6/18/19 → 6/20/19 |
Fingerprint
All Science Journal Classification (ASJC) codes
- Software
Cite this
Faster queries for longest substring palindrome after block edit. / Funakoshi, Mitsuru; Nakashima, Yuto; Inenaga, Shunsuke; Bannai, Hideo; Takeda, Masayuki.
30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019. ed. / Nadia Pisanti; Solon P. Pissis. Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing, 2019. 27 (Leibniz International Proceedings in Informatics, LIPIcs; Vol. 128).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution
}
TY - GEN
T1 - Faster queries for longest substring palindrome after block edit
AU - Funakoshi, Mitsuru
AU - Nakashima, Yuto
AU - Inenaga, Shunsuke
AU - Bannai, Hideo
AU - Takeda, Masayuki
PY - 2019/6/1
Y1 - 2019/6/1
N2 - Palindromes are important objects in strings which have been extensively studied from combinatorial, algorithmic, and bioinformatics points of views. Manacher [J. ACM 1975] proposed a seminal algorithm that computes the longest substring palindromes (LSPals) of a given string in O(n) time, where n is the length of the string. In this paper, we consider the problem of finding the LSPal after the string is edited. We present an algorithm that uses O(n) time and space for preprocessing, and answers the length of the LSPals in O(ℓ + log log n) time, after a substring in T is replaced by a string of arbitrary length ℓ. This outperforms the query algorithm proposed in our previous work [CPM 2018] that uses O(ℓ + log n) time for each query.
AB - Palindromes are important objects in strings which have been extensively studied from combinatorial, algorithmic, and bioinformatics points of views. Manacher [J. ACM 1975] proposed a seminal algorithm that computes the longest substring palindromes (LSPals) of a given string in O(n) time, where n is the length of the string. In this paper, we consider the problem of finding the LSPal after the string is edited. We present an algorithm that uses O(n) time and space for preprocessing, and answers the length of the LSPals in O(ℓ + log log n) time, after a substring in T is replaced by a string of arbitrary length ℓ. This outperforms the query algorithm proposed in our previous work [CPM 2018] that uses O(ℓ + log n) time for each query.
UR - http://www.scopus.com/inward/record.url?scp=85068094447&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=85068094447&partnerID=8YFLogxK
U2 - 10.4230/LIPIcs.CPM.2019.27
DO - 10.4230/LIPIcs.CPM.2019.27
M3 - Conference contribution
T3 - Leibniz International Proceedings in Informatics, LIPIcs
BT - 30th Annual Symposium on Combinatorial Pattern Matching, CPM 2019
A2 - Pisanti, Nadia
A2 - Pissis, Solon P.
PB - Schloss Dagstuhl- Leibniz-Zentrum fur Informatik GmbH, Dagstuhl Publishing
ER -