Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA

Semvua I. Mzighani, Masato Nikaido, Miyuki Takeda, Ole Seehausen, Yohana L. Budeba, Benjamin P. Ngatunga, Egid F.B. Katunzi, Mitsuto Aibara, Shinji Mizoiri, Tetsu Sato, Hidenori Tachida, Norihiro Okada

Research output: Contribution to journalArticle

14 Citations (Scopus)

Abstract

More than 500 endemic haplochromine cichlid species inhabit Lake Victoria. This striking species diversity is a classical example of recent explosive adaptive radiation thought to have happened within the last ~15,000 years. In this study, we examined the population structure and historical demography of 3 pelagic haplochromine cichlid species that resemble in morphology and have similar niche, Haplochromis (Yssichromis) laparogramma, Haplochromis (Y.) pyrrhocephalus, and Haplochromis (Y.) sp. "glaucocephalus". We investigated the sequences of the mitochondrial DNA control region and the insertion patterns of short interspersed elements (SINEs) of 759 individuals. We show that sympatric forms are genetically differentiated in 4 of 6 cases, but we also found apparent weakening of the genetic differentiation in areas with turbid water. We estimated the timings of population expansion and species divergence to coincide with the refilling of the lake at the Pleistocene/Holocene boundary. We also found that estimates can be altered significantly by the choice of the shape of the molecular clock. If we employ the nonlinear clock model of evolutionary rates in which the rates are higher towards the recent, the population expansion was dated at around the event of desiccation of the lake ca. 17,000 YBP. Thus, we succeeded in clarifying the species and population structure of closely related Lake Victoria cichlids and in showing the importance of applying appropriate clock calibrations in elucidating recent evolutionary events.

Original languageEnglish
Article number36642
Pages (from-to)39-47
Number of pages9
JournalGene
Volume450
Issue number1-2
DOIs
Publication statusPublished - Jan 1 2010

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Victoria
Lakes
Mitochondrial DNA
Cichlids
Demography
Population
Desiccation
Nonlinear Dynamics
Calibration
Radiation
Water

All Science Journal Classification (ASJC) codes

  • Genetics

Cite this

Mzighani, S. I., Nikaido, M., Takeda, M., Seehausen, O., Budeba, Y. L., Ngatunga, B. P., ... Okada, N. (2010). Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA. Gene, 450(1-2), 39-47. [36642]. https://doi.org/10.1016/j.gene.2009.10.002

Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA. / Mzighani, Semvua I.; Nikaido, Masato; Takeda, Miyuki; Seehausen, Ole; Budeba, Yohana L.; Ngatunga, Benjamin P.; Katunzi, Egid F.B.; Aibara, Mitsuto; Mizoiri, Shinji; Sato, Tetsu; Tachida, Hidenori; Okada, Norihiro.

In: Gene, Vol. 450, No. 1-2, 36642, 01.01.2010, p. 39-47.

Research output: Contribution to journalArticle

Mzighani, SI, Nikaido, M, Takeda, M, Seehausen, O, Budeba, YL, Ngatunga, BP, Katunzi, EFB, Aibara, M, Mizoiri, S, Sato, T, Tachida, H & Okada, N 2010, 'Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA', Gene, vol. 450, no. 1-2, 36642, pp. 39-47. https://doi.org/10.1016/j.gene.2009.10.002
Mzighani, Semvua I. ; Nikaido, Masato ; Takeda, Miyuki ; Seehausen, Ole ; Budeba, Yohana L. ; Ngatunga, Benjamin P. ; Katunzi, Egid F.B. ; Aibara, Mitsuto ; Mizoiri, Shinji ; Sato, Tetsu ; Tachida, Hidenori ; Okada, Norihiro. / Genetic variation and demographic history of the Haplochromis laparogramma group of Lake Victoria-An analysis based on SINEs and mitochondrial DNA. In: Gene. 2010 ; Vol. 450, No. 1-2. pp. 39-47.
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AU - Seehausen, Ole

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