Genome-wide identification of polycomb target genes reveals a functional association of pho with scm in bombyx mori

Zhiqing Li, Daojun Cheng, Hiroaki Mon, Tsuneyuki Tatsuke, Li Zhu, Jian Xu, Man Lee, Qingyou Xia, Takahiro Kusakabe

Research output: Contribution to journalArticle

13 Citations (Scopus)

Abstract

Polycomb group (PcG) proteins are evolutionarily conserved chromatin modifiers and act together in three multimeric complexes, Polycomb repressive complex 1 (PRC1), Polycomb repressive complex 2 (PRC2), and Pleiohomeotic repressive complex (PhoRC), to repress transcription of the target genes. Here, we identified Polycomb target genes in Bombyx mori with holocentric centromere using genome-wide expression screening based on the knockdown of BmSCE, BmESC, BmPHO, or BmSCM gene, which represent the distinct complexes. As a result, the expressions of 29 genes were up-regulated after knocking down 4 PcG genes. Particularly, there is a significant overlap between targets of BmPho (331 out of 524) and BmScm (331 out of 532), and among these, 190 genes function as regulator factors playing important roles in development. We also found that BmPho, as well as BmScm, can interact with other Polycomb components examined in this study. Further detailed analysis revealed that the C-terminus of BmPho containing zinc finger domain is involved in the interaction between BmPho and BmScm. Moreover, the zinc finger domain in BmPho contributes to its inhibitory function and ectopic overexpression of BmScm is able to promote transcriptional repression by Gal4-Pho fusions including BmScm-interacting domain. Loss of BmPho expression causes relocalization of BmScm into the cytoplasm. Collectively, we provide evidence of a functional link between BmPho and BmScm, and propose two Polycomb-related repression mechanisms requiring only BmPho associated with BmScm or a whole set of PcG complexes.

Original languageEnglish
Article numbere34330
JournalPloS one
Volume7
Issue number4
DOIs
Publication statusPublished - Apr 2 2012

Fingerprint

Bombyx
Bombyx mori
Genes
Genome
genome
Zinc Fingers
genes
zinc finger motif
Polycomb Repressive Complex 1
Polycomb Repressive Complex 2
Polycomb-Group Proteins
Zinc
Centromere
modifiers (genes)
centromeres
Chromatin
Cytoplasm
Transcription
chromatin
Gene Expression

All Science Journal Classification (ASJC) codes

  • Biochemistry, Genetics and Molecular Biology(all)
  • Agricultural and Biological Sciences(all)

Cite this

Genome-wide identification of polycomb target genes reveals a functional association of pho with scm in bombyx mori. / Li, Zhiqing; Cheng, Daojun; Mon, Hiroaki; Tatsuke, Tsuneyuki; Zhu, Li; Xu, Jian; Lee, Man; Xia, Qingyou; Kusakabe, Takahiro.

In: PloS one, Vol. 7, No. 4, e34330, 02.04.2012.

Research output: Contribution to journalArticle

Li, Zhiqing ; Cheng, Daojun ; Mon, Hiroaki ; Tatsuke, Tsuneyuki ; Zhu, Li ; Xu, Jian ; Lee, Man ; Xia, Qingyou ; Kusakabe, Takahiro. / Genome-wide identification of polycomb target genes reveals a functional association of pho with scm in bombyx mori. In: PloS one. 2012 ; Vol. 7, No. 4.
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