Abstract
Allele and haplotype frequencies of the human leukocyte antigens (HLA) were studied in the Kinh Vietnamese population. We analyzed 170 unrelated healthy individuals. DNA-based HLA typing was performed using a microsphere-based array genotyping platform with sequence-specific oligonucleotide probes to distinguish HLA-A, -B, -C, -DRB1 and -DQB1 alleles. A total of 21 HLA-A, 37 HLA-B, 18 HLA-C, 25 HLA-DRB1, and 14 HLA-DQB1 alleles were identified. HLA-A*1101, A*2402, A*3303, B*1502, B*4601, Cw*0102, Cw*0702, Cw*0801, DRB1*1202, DQB1*0301, DQB1*0303, and DQB1*0501 were found with frequencies higher than 10%. Two representative haplotypes bearing two to five HLA loci were A*1101- B*1502 and A*3303-B*5801 for HLA-A-B; Cw*0801- B*1502 and Cw*0102-B*4601 for HLA-C-B; B*1502- DRB1*1202 and B*4601-DRB1*0901 for HLA-B-DRB1; DRB1*1202-DQB1*0301 and DRB1*0901-DQB1*0303 for HLA-DRB1-DQB1; A*1101-Cw*0801-B*1502 and A*3303- Cw*0302-B*5801 for HLA-A-C-B; A*1101-B*1502- DRB1*1202 and A*2901-B*0705-DRB1*1001 for HLA-A-B-DRB1, A*1101-Cw*0801-B*1502-DRB1*1202-DQB1*0301 and A*2901-Cw*1505-B*0705-DRB1*1001-DQB1*0501 for HLA-A-C-B-DRB1-DQB1. Allele distribution and haplotype analysis demonstrated that the Vietnamese population shares HLA patterns with southern Chinese, Thai, Javanese and Micronesians, while it also retains unique characteristics.
| Original language | English |
|---|---|
| Pages (from-to) | 127-134 |
| Number of pages | 8 |
| Journal | Tissue antigens |
| Volume | 71 |
| Issue number | 2 |
| DOIs | |
| Publication status | Published - Feb 1 2008 |
| Externally published | Yes |
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All Science Journal Classification (ASJC) codes
- Immunology and Allergy
- Immunology
- Biochemistry
- Genetics
Cite this
HLA-A, -B, -C, -DRB1 and -DQB1 alleles and haplotypes in the Kinh population in Vietnam. / Hoa, B. K.; Hang, N. T.L.; Kashiwase, K.; Ohashi, J.; Lien, L. T.; Horie, T.; Shojima, J.; Hijikata, M.; Sakurada, S.; Satake, M.; Tokunaga, K.; Sasazuki, T.; Keicho, N.
In: Tissue antigens, Vol. 71, No. 2, 01.02.2008, p. 127-134.Research output: Contribution to journal › Article
}
TY - JOUR
T1 - HLA-A, -B, -C, -DRB1 and -DQB1 alleles and haplotypes in the Kinh population in Vietnam
AU - Hoa, B. K.
AU - Hang, N. T.L.
AU - Kashiwase, K.
AU - Ohashi, J.
AU - Lien, L. T.
AU - Horie, T.
AU - Shojima, J.
AU - Hijikata, M.
AU - Sakurada, S.
AU - Satake, M.
AU - Tokunaga, K.
AU - Sasazuki, T.
AU - Keicho, N.
PY - 2008/2/1
Y1 - 2008/2/1
N2 - Allele and haplotype frequencies of the human leukocyte antigens (HLA) were studied in the Kinh Vietnamese population. We analyzed 170 unrelated healthy individuals. DNA-based HLA typing was performed using a microsphere-based array genotyping platform with sequence-specific oligonucleotide probes to distinguish HLA-A, -B, -C, -DRB1 and -DQB1 alleles. A total of 21 HLA-A, 37 HLA-B, 18 HLA-C, 25 HLA-DRB1, and 14 HLA-DQB1 alleles were identified. HLA-A*1101, A*2402, A*3303, B*1502, B*4601, Cw*0102, Cw*0702, Cw*0801, DRB1*1202, DQB1*0301, DQB1*0303, and DQB1*0501 were found with frequencies higher than 10%. Two representative haplotypes bearing two to five HLA loci were A*1101- B*1502 and A*3303-B*5801 for HLA-A-B; Cw*0801- B*1502 and Cw*0102-B*4601 for HLA-C-B; B*1502- DRB1*1202 and B*4601-DRB1*0901 for HLA-B-DRB1; DRB1*1202-DQB1*0301 and DRB1*0901-DQB1*0303 for HLA-DRB1-DQB1; A*1101-Cw*0801-B*1502 and A*3303- Cw*0302-B*5801 for HLA-A-C-B; A*1101-B*1502- DRB1*1202 and A*2901-B*0705-DRB1*1001 for HLA-A-B-DRB1, A*1101-Cw*0801-B*1502-DRB1*1202-DQB1*0301 and A*2901-Cw*1505-B*0705-DRB1*1001-DQB1*0501 for HLA-A-C-B-DRB1-DQB1. Allele distribution and haplotype analysis demonstrated that the Vietnamese population shares HLA patterns with southern Chinese, Thai, Javanese and Micronesians, while it also retains unique characteristics.
AB - Allele and haplotype frequencies of the human leukocyte antigens (HLA) were studied in the Kinh Vietnamese population. We analyzed 170 unrelated healthy individuals. DNA-based HLA typing was performed using a microsphere-based array genotyping platform with sequence-specific oligonucleotide probes to distinguish HLA-A, -B, -C, -DRB1 and -DQB1 alleles. A total of 21 HLA-A, 37 HLA-B, 18 HLA-C, 25 HLA-DRB1, and 14 HLA-DQB1 alleles were identified. HLA-A*1101, A*2402, A*3303, B*1502, B*4601, Cw*0102, Cw*0702, Cw*0801, DRB1*1202, DQB1*0301, DQB1*0303, and DQB1*0501 were found with frequencies higher than 10%. Two representative haplotypes bearing two to five HLA loci were A*1101- B*1502 and A*3303-B*5801 for HLA-A-B; Cw*0801- B*1502 and Cw*0102-B*4601 for HLA-C-B; B*1502- DRB1*1202 and B*4601-DRB1*0901 for HLA-B-DRB1; DRB1*1202-DQB1*0301 and DRB1*0901-DQB1*0303 for HLA-DRB1-DQB1; A*1101-Cw*0801-B*1502 and A*3303- Cw*0302-B*5801 for HLA-A-C-B; A*1101-B*1502- DRB1*1202 and A*2901-B*0705-DRB1*1001 for HLA-A-B-DRB1, A*1101-Cw*0801-B*1502-DRB1*1202-DQB1*0301 and A*2901-Cw*1505-B*0705-DRB1*1001-DQB1*0501 for HLA-A-C-B-DRB1-DQB1. Allele distribution and haplotype analysis demonstrated that the Vietnamese population shares HLA patterns with southern Chinese, Thai, Javanese and Micronesians, while it also retains unique characteristics.
UR - http://www.scopus.com/inward/record.url?scp=38049168734&partnerID=8YFLogxK
UR - http://www.scopus.com/inward/citedby.url?scp=38049168734&partnerID=8YFLogxK
U2 - 10.1111/j.1399-0039.2007.00982.x
DO - 10.1111/j.1399-0039.2007.00982.x
M3 - Article
C2 - 18086267
AN - SCOPUS:38049168734
VL - 71
SP - 127
EP - 134
JO - HLA
JF - HLA
SN - 2059-2302
IS - 2
ER -