Kinetic modeling and sensitivity analysis of xylose metabolism in Lactococcus lactis IO-1

Mugihito Oshiro, Hideaki Shinto, Yukihiro Tashiro, Noriko Miwa, Tatsuya Sekiguchi, Masahiro Okamoto, Ayaaki Ishizaki, Kenji Sonomoto

Research output: Contribution to journalArticle

18 Citations (Scopus)

Abstract

We proposed a kinetic simulation model of xylose metabolism in Lactococcus lactis IO-1 that describes the dynamic behavior of metabolites using the simulator WinBEST-KIT. This model was developed by comparing the experimental time-course data of metabolites in batch cultures grown in media with initial xylose concentrations of 20.3-57.8 g/l with corresponding calculated data. By introducing the terms of substrate activation, substrate inhibition, and product inhibition, the revised model showed a squared correlation coefficient (r2) of 0.929 between the experimental time-course of metabolites and the calculated data. Thus, the revised model is assumed to be one of the best candidates for kinetic simulation describing the dynamic behavior of metabolites. Sensitivity analysis revealed that pyruvate flux distribution is important for higher lactate production. To confirm the validity of our kinetic model, the results of the sensitivity analysis were compared with enzyme activities observed during increasing lactate production by adding natural rubber serum powder to the xylose medium. The experimental results on pyruvate flux distribution were consistent with the prediction by sensitivity analysis.

Original languageEnglish
Pages (from-to)376-384
Number of pages9
JournalJournal of Bioscience and Bioengineering
Volume108
Issue number5
DOIs
Publication statusPublished - Nov 1 2009

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Enzyme kinetics
Lactococcus lactis
Xylose
Metabolism
Sensitivity analysis
Metabolites
Pyruvic Acid
Lactic Acid
Batch Cell Culture Techniques
Fluxes
Kinetics
Enzyme activity
Substrates
Enzymes
Rubber
Simulators
Chemical activation
Powders

All Science Journal Classification (ASJC) codes

  • Biotechnology
  • Bioengineering
  • Applied Microbiology and Biotechnology

Cite this

Kinetic modeling and sensitivity analysis of xylose metabolism in Lactococcus lactis IO-1. / Oshiro, Mugihito; Shinto, Hideaki; Tashiro, Yukihiro; Miwa, Noriko; Sekiguchi, Tatsuya; Okamoto, Masahiro; Ishizaki, Ayaaki; Sonomoto, Kenji.

In: Journal of Bioscience and Bioengineering, Vol. 108, No. 5, 01.11.2009, p. 376-384.

Research output: Contribution to journalArticle

Oshiro, M, Shinto, H, Tashiro, Y, Miwa, N, Sekiguchi, T, Okamoto, M, Ishizaki, A & Sonomoto, K 2009, 'Kinetic modeling and sensitivity analysis of xylose metabolism in Lactococcus lactis IO-1', Journal of Bioscience and Bioengineering, vol. 108, no. 5, pp. 376-384. https://doi.org/10.1016/j.jbiosc.2009.05.003
Oshiro, Mugihito ; Shinto, Hideaki ; Tashiro, Yukihiro ; Miwa, Noriko ; Sekiguchi, Tatsuya ; Okamoto, Masahiro ; Ishizaki, Ayaaki ; Sonomoto, Kenji. / Kinetic modeling and sensitivity analysis of xylose metabolism in Lactococcus lactis IO-1. In: Journal of Bioscience and Bioengineering. 2009 ; Vol. 108, No. 5. pp. 376-384.
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