Particle-Based model of cellular morphogenesis in budding yeast

Marcin Leda; Satoshi Okada; Erfei Bi; Yves Barral; Andrew B. Goryachev

Particle-Based model of cellular morphogenesis in budding yeast

Marcin Leda, Satoshi Okada, Erfei Bi, Yves Barral, Andrew B. Goryachev

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Abstract

We apply Lagrangian particle method combined with the level-set method to model morphogenesis of budding yeast on the subcellular level. We model the biochemical reactions, anisotropic diffusion, membrane-cytoplasmic transport of proteins and introduction of new membrane material (exocytosis) that occur on the plasma membrane. Exocytosis results in protrusion of the membrane surface. Hence, to model these phenomena we need to solve a system of reaction-diffusion-advection equations on the evolving surface.

Original language	English
Title of host publication	Particle-Based Methods III
Subtitle of host publication	Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013
Pages	145-152
Number of pages	8
Publication status	Published - Dec 1 2013
Externally published	Yes
Event	3rd International Conference on Particle-Based Methods Fundamentals and Applications, Particles 2013 - Stuttgart, Germany Duration: Sep 18 2013 → Sep 20 2013

Publication series

Name	Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013

Other

Other	3rd International Conference on Particle-Based Methods Fundamentals and Applications, Particles 2013
Country	Germany
City	Stuttgart
Period	9/18/13 → 9/20/13

All Science Journal Classification (ASJC) codes

Atomic and Molecular Physics, and Optics

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Cite this

Leda, M., Okada, S., Bi, E., Barral, Y., & Goryachev, A. B. (2013). Particle-Based model of cellular morphogenesis in budding yeast. In Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013 (pp. 145-152). (Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013).

Particle-Based model of cellular morphogenesis in budding yeast. / Leda, Marcin; Okada, Satoshi; Bi, Erfei; Barral, Yves; Goryachev, Andrew B.

Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013. 2013. p. 145-152 (Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013).

Research output: Chapter in Book/Report/Conference proceeding › Conference contribution

Leda, M, Okada, S, Bi, E, Barral, Y & Goryachev, AB 2013, Particle-Based model of cellular morphogenesis in budding yeast. in Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013. Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013, pp. 145-152, 3rd International Conference on Particle-Based Methods Fundamentals and Applications, Particles 2013, Stuttgart, Germany, 9/18/13.

Leda M, Okada S, Bi E, Barral Y, Goryachev AB. Particle-Based model of cellular morphogenesis in budding yeast. In Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013. 2013. p. 145-152. (Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013).

Leda, Marcin ; Okada, Satoshi ; Bi, Erfei ; Barral, Yves ; Goryachev, Andrew B. / Particle-Based model of cellular morphogenesis in budding yeast. Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013. 2013. pp. 145-152 (Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013).

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