Particle-Based model of cellular morphogenesis in budding yeast

Marcin Leda, Satoshi Okada, Erfei Bi, Yves Barral, Andrew B. Goryachev

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Abstract

We apply Lagrangian particle method combined with the level-set method to model morphogenesis of budding yeast on the subcellular level. We model the biochemical reactions, anisotropic diffusion, membrane-cytoplasmic transport of proteins and introduction of new membrane material (exocytosis) that occur on the plasma membrane. Exocytosis results in protrusion of the membrane surface. Hence, to model these phenomena we need to solve a system of reaction-diffusion-advection equations on the evolving surface.

Original languageEnglish
Title of host publicationParticle-Based Methods III
Subtitle of host publicationFundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013
Pages145-152
Number of pages8
Publication statusPublished - Dec 1 2013
Externally publishedYes
Event3rd International Conference on Particle-Based Methods Fundamentals and Applications, Particles 2013 - Stuttgart, Germany
Duration: Sep 18 2013Sep 20 2013

Publication series

NameParticle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013

Other

Other3rd International Conference on Particle-Based Methods Fundamentals and Applications, Particles 2013
CountryGermany
CityStuttgart
Period9/18/139/20/13

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All Science Journal Classification (ASJC) codes

  • Atomic and Molecular Physics, and Optics

Cite this

Leda, M., Okada, S., Bi, E., Barral, Y., & Goryachev, A. B. (2013). Particle-Based model of cellular morphogenesis in budding yeast. In Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013 (pp. 145-152). (Particle-Based Methods III: Fundamentals and Applications - Proceedings of the 3rd International Conference on Particle-based MethodsFundamentals and Applications, Particles 2013).