Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid

Yusuke Inoue, Takahiro Koita, Akira Fukuda

Research output: Chapter in Book/Report/Conference proceedingConference contribution

1 Citation (Scopus)

Abstract

Heuristic scheduling schemes for the genomic application InterProScan are implemented, and these scheduling schemes are evaluated on OBIGrid (Open Bioinformatics Grid), which is an experimental Grid for bioinformatics being developed by Japan Committees. This paper presents the implementation details of the scheduling schemes and compares their mean response times. The mean response time of an Adaptive scheme, which uses the information of the application program and the processor, is smaller than that of other schemes for all load levels.

Original languageEnglish
Title of host publicationProceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology
EditorsM.H. Hamza, M.H. Hamza
Pages699-703
Number of pages5
Publication statusPublished - Dec 1 2003
EventProceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology - Scottdale, AZ, United States
Duration: Nov 17 2003Nov 19 2003

Publication series

NameProceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology

Other

OtherProceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology
CountryUnited States
CityScottdale, AZ
Period11/17/0311/19/03

Fingerprint

Bioinformatics
Scheduling
Application programs

All Science Journal Classification (ASJC) codes

  • Computer Networks and Communications

Cite this

Inoue, Y., Koita, T., & Fukuda, A. (2003). Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid. In M. H. Hamza, & M. H. Hamza (Eds.), Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology (pp. 699-703). (Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology).

Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid. / Inoue, Yusuke; Koita, Takahiro; Fukuda, Akira.

Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology. ed. / M.H. Hamza; M.H. Hamza. 2003. p. 699-703 (Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology).

Research output: Chapter in Book/Report/Conference proceedingConference contribution

Inoue, Y, Koita, T & Fukuda, A 2003, Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid. in MH Hamza & MH Hamza (eds), Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology. Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology, pp. 699-703, Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology, Scottdale, AZ, United States, 11/17/03.
Inoue Y, Koita T, Fukuda A. Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid. In Hamza MH, Hamza MH, editors, Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology. 2003. p. 699-703. (Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology).
Inoue, Yusuke ; Koita, Takahiro ; Fukuda, Akira. / Performance Evaluation of Scheduling Schemes for a Genomic Application on OBIGrid. Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology. editor / M.H. Hamza ; M.H. Hamza. 2003. pp. 699-703 (Proceedings of the Second IASTED International Conference on Communications, Internet, and Information Technology).
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