Photochemical generation of oligodeoxynucleotide containing a C4′-oxidized abasie site and its efficient amine modification: Dependence on structure and microenvironment

Kazuteru Usui, Mariko Aso, Mitsuhiro Fukuda, Hiroshi Suemune

Research output: Contribution to journalArticle

24 Citations (Scopus)

Abstract

(Chemical Equation Presented) Bleomycin-induced oxidative DNA damage under limited oxygen conditions results in the formation of the C4′-oxidized abasic site (1). We synthesized the oligodeoxynucleotides (ODN) 5, which contains 4′-o-nitrobenzyloxythymidine (3), and 6, which contains 2-nitrobenzyloxy-4′-methoxy-2′-deoxy-D-ribofuranoside (4) as the caged precursors of 7, an ODN containing 1, to study its reactivity with amines Photoirradiation of the single- and double-stranded 5 led to the formation of 7. Uncaging of the duplex was faster and the yield of 7 was higher with the double-stranded than with the single-stranded ODN. It was suggested that a low dielectric environment of the o-nitrobenzyloxy group in the minor groove of the duplex might accelerate the uncaging rate. Similarly, 6 and its duplex yielded 7 by photoirradiation However, the yields of 7 were lower than those of 5, and duplex formation slowed the uncaging rate. Reaction of the obtained 7 with an amine resulted in the formation of the lactam 2b in good yield in both single- and double-stranded forms, showing that amine modification of biomolecules by an ODN containing 1 is possible under physiologic conditions.

Original languageEnglish
Pages (from-to)241-248
Number of pages8
JournalJournal of Organic Chemistry
Volume73
Issue number1
DOIs
Publication statusPublished - Jan 4 2008

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Oligodeoxyribonucleotides
Amines
Lactams
Bleomycin
Biomolecules
Oxygen
DNA

All Science Journal Classification (ASJC) codes

  • Organic Chemistry

Cite this

Photochemical generation of oligodeoxynucleotide containing a C4′-oxidized abasie site and its efficient amine modification : Dependence on structure and microenvironment. / Usui, Kazuteru; Aso, Mariko; Fukuda, Mitsuhiro; Suemune, Hiroshi.

In: Journal of Organic Chemistry, Vol. 73, No. 1, 04.01.2008, p. 241-248.

Research output: Contribution to journalArticle

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